Cla015662 (gene) Watermelon (97103) v1

NameCla015662
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionPolygalacturonase (AHRD V1 ***- E3VSV7_CUCPE); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28
LocationChr2 : 2447907 .. 2448296 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAATGTTAGCAATCCAATTCTCATAGACCAAGAGTATTGCCCATGGAATCAGTGCAATCGCAAGGTATTGATCACATTCCAAAAACTTTGATTTCAAAATTCTTCATGTCAATTTCACAAATAAACTTTAATTTTGTTTTTTATTTTTCAGGTTCCATCGAAGATTAAGATTAGTAAAGTGAGTTTCAAGAACATTAGAGGAAGTTCCGCAACTCCAATGGCAGTCAAACTTATTTGTAGTAGCAACCTGCCATGTGACGAAGTAAAAGTAGCCAACATTGACCTCGTTTACAATGGAATAGAGGGTTCTATTACATCTCAATGTATGAATGTGAAACCCATCATTTCAGGGATACAAAATCCTCAAATGTGCTCTTCCCCTTAA

mRNA sequence

ATGGTCAATGTTAGCAATCCAATTCTCATAGACCAAGAGTATTGCCCATGGAATCAGTGCAATCGCAAGGTTCCATCGAAGATTAAGATTAGTAAAGTGAGTTTCAAGAACATTAGAGGAAGTTCCGCAACTCCAATGGCAGTCAAACTTATTTGTAGTAGCAACCTGCCATGTGACGAAGTAAAAGTAGCCAACATTGACCTCGTTTACAATGGAATAGAGGGTTCTATTACATCTCAATGTATGAATGTGAAACCCATCATTTCAGGGATACAAAATCCTCAAATGTGCTCTTCCCCTTAA

Coding sequence (CDS)

ATGGTCAATGTTAGCAATCCAATTCTCATAGACCAAGAGTATTGCCCATGGAATCAGTGCAATCGCAAGGTTCCATCGAAGATTAAGATTAGTAAAGTGAGTTTCAAGAACATTAGAGGAAGTTCCGCAACTCCAATGGCAGTCAAACTTATTTGTAGTAGCAACCTGCCATGTGACGAAGTAAAAGTAGCCAACATTGACCTCGTTTACAATGGAATAGAGGGTTCTATTACATCTCAATGTATGAATGTGAAACCCATCATTTCAGGGATACAAAATCCTCAAATGTGCTCTTCCCCTTAA

Protein sequence

MVNVSNPILIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGSSATPMAVKLICSSNLPCDEVKVANIDLVYNGIEGSITSQCMNVKPIISGIQNPQMCSSP
BLAST of Cla015662 vs. Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-29
Identity = 60/100 (60.00%), Postives = 75/100 (75.00%), Query Frame = 1

Query: 1   MVNVSNPILIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGSSATPMAVKLICSSNLPCDE 60
           M NVS+PILIDQ+YCPWN+C +   SK+K+S +SFKNIRG+SA P A+K ICS + PC  
Sbjct: 300 MNNVSSPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQN 359

Query: 61  VKVANIDLVYNGIEGSITSQCMNVKPIISGIQNPQMCSSP 101
           V++A+ID+ +NG E + TSQC+NVKPI SG  NP  CS P
Sbjct: 360 VELADIDIKHNGAEPA-TSQCLNVKPITSGKLNPIPCSGP 398

BLAST of Cla015662 vs. Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.3e-29
Identity = 59/100 (59.00%), Postives = 74/100 (74.00%), Query Frame = 1

Query: 1   MVNVSNPILIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGSSATPMAVKLICSSNLPCDE 60
           M NVS+PILIDQ+YCPWN+C +   SK+K+S +SFKNIRG+SA P A+K ICS + PC  
Sbjct: 300 MNNVSSPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQN 359

Query: 61  VKVANIDLVYNGIEGSITSQCMNVKPIISGIQNPQMCSSP 101
           V++A+ID+ +NG E + TSQC+NVKPI  G  NP  CS P
Sbjct: 360 VELADIDIQHNGAEPA-TSQCLNVKPITIGKLNPIPCSGP 398

BLAST of Cla015662 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-27
Identity = 56/98 (57.14%), Postives = 71/98 (72.45%), Query Frame = 1

Query: 1   MVNVSNPILIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGSSATPMAVKLICSSNLPCDE 60
           M +V  PILIDQ YCP+NQC  +VPS +K+SK+SFKNI+G+S T  AVKL+CS + PC+ 
Sbjct: 258 MNSVGTPILIDQGYCPYNQCTAEVPSSVKLSKISFKNIKGTSTTKEAVKLVCSKSFPCNG 317

Query: 61  VKVANIDLVYNGIEGSITSQCMNVKPIISGIQNPQMCS 99
           V++A+IDL Y+G  G  TS C N+KP I G Q P +CS
Sbjct: 318 VELADIDLTYSGKGGPATSVCENIKPTIKGKQIPAICS 355

BLAST of Cla015662 vs. Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-26
Identity = 51/97 (52.58%), Postives = 74/97 (76.29%), Query Frame = 1

Query: 3   NVSNPILIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGSSATPMAVKLICSSNLPCDEVK 62
           NVSNP++IDQ YCP+N+CN+ +PS++KISKVSF+NI+G+S T  AV L+ S  +PC+ ++
Sbjct: 294 NVSNPVVIDQVYCPFNKCNKDLPSQVKISKVSFQNIKGTSRTQDAVSLLRSKGVPCEGIE 353

Query: 63  VANIDLVYNGIEGSITSQCMNVKPIISGIQNPQMCSS 100
           V +ID+ Y+G EG   S C N+KP + G QNP +C++
Sbjct: 354 VGDIDITYSGKEGPAKSSCENIKPSLKGKQNPPVCTA 390

BLAST of Cla015662 vs. Swiss-Prot
Match: PGLR_BRANA (Polygalacturonase OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-26
Identity = 52/97 (53.61%), Postives = 67/97 (69.07%), Query Frame = 1

Query: 4   VSNPILIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGSSATPMAVKLICSSNLPCDEVKV 63
           VSNPILIDQEYCPWNQCN+  PS IK+  ++F+NIRG+S    AVKL+CS   PC+ V++
Sbjct: 293 VSNPILIDQEYCPWNQCNKNKPSTIKLVDITFRNIRGTSENKDAVKLLCSKGHPCENVEI 352

Query: 64  ANIDLVYNGIEGSITSQCMNVKPIISGIQNPQMCSSP 101
            +I++ Y G +G  T +C NV P + G QNP+ C  P
Sbjct: 353 GDINIEYTGPDGPPTFECTNVTPKLVGAQNPKACVGP 389

BLAST of Cla015662 vs. TrEMBL
Match: A0A0A0K3B7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037910 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.2e-45
Identity = 89/99 (89.90%), Postives = 97/99 (97.98%), Query Frame = 1

Query: 1   MVNVSNPILIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGSSATPMAVKLICSSNLPCDE 60
           MVNVSNPILIDQEYCPWNQCNR++PS IKI+KVSFKNIRGSSATP+AVKLICSSNLPC+E
Sbjct: 299 MVNVSNPILIDQEYCPWNQCNREIPSNIKINKVSFKNIRGSSATPVAVKLICSSNLPCEE 358

Query: 61  VKVANIDLVYNGIEGSITSQCMNVKPIISGIQNPQMCSS 100
           VKVANIDLVYNGI+GSITS+CMNVKPIISGIQNP +CSS
Sbjct: 359 VKVANIDLVYNGIKGSITSECMNVKPIISGIQNPPICSS 397

BLAST of Cla015662 vs. TrEMBL
Match: E3VSV7_CUCPE (Polygalacturonase OS=Cucurbita pepo GN=PG1 PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.4e-35
Identity = 70/100 (70.00%), Postives = 85/100 (85.00%), Query Frame = 1

Query: 1   MVNVSNPILIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGSSATPMAVKLICSSNLPCDE 60
           M NV+NPI+IDQEYCPWNQCNRKVPS IKISKVSFKNIRG+S+TP+AVKL+CS + PC+ 
Sbjct: 307 MENVANPIIIDQEYCPWNQCNRKVPSAIKISKVSFKNIRGTSSTPVAVKLVCSKSNPCEG 366

Query: 61  VKVANIDLVYNGIEGSITSQCMNVKPIISGIQNPQMCSSP 101
           V++A+IDL Y+G EG   S+C NVKP ISG QNP +C+ P
Sbjct: 367 VEIADIDLTYSGKEGPAVSECSNVKPTISGKQNPPICAKP 406

BLAST of Cla015662 vs. TrEMBL
Match: A0A0D2NBK5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G193800 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 6.0e-34
Identity = 68/99 (68.69%), Postives = 82/99 (82.83%), Query Frame = 1

Query: 1   MVNVSNPILIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGSSATPMAVKLICSSNLPCDE 60
           M NV NPIL+DQEYCPWNQC+  VPS++++SK+SFKNIRG+S T +AVKLICSS LPCDE
Sbjct: 294 MDNVGNPILVDQEYCPWNQCDLSVPSRVQLSKLSFKNIRGTSKTQIAVKLICSSGLPCDE 353

Query: 61  VKVANIDLVYNGIEGSITSQCMNVKPIISGIQNPQMCSS 100
           V++A+IDL YNG EG   SQC NV P +SG+QNP  CSS
Sbjct: 354 VELADIDLTYNGPEGPAISQCSNVHPALSGVQNPAACSS 392

BLAST of Cla015662 vs. TrEMBL
Match: W9SBW1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020040 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 8.6e-33
Identity = 67/99 (67.68%), Postives = 79/99 (79.80%), Query Frame = 1

Query: 1   MVNVSNPILIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGSSATPMAVKLICSSNLPCDE 60
           M NV NP+LIDQEYCPWNQCN KVPS+IKIS VSFKNIRG+S T +AV L+CSS  PC  
Sbjct: 296 MENVGNPVLIDQEYCPWNQCNAKVPSRIKISDVSFKNIRGTSTTALAVNLVCSSGFPCQN 355

Query: 61  VKVANIDLVYNGIEGSITSQCMNVKPIISGIQNPQMCSS 100
           V++A+IDL Y+G +G I SQC NVKP ISG QNP  C++
Sbjct: 356 VEIADIDLQYSGNDGPIMSQCKNVKPTISGKQNPNPCAT 394

BLAST of Cla015662 vs. TrEMBL
Match: Q9MBB7_SALGI (Polygalacturonase OS=Salix gilgiana GN=SgPG4 PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.8e-31
Identity = 64/97 (65.98%), Postives = 79/97 (81.44%), Query Frame = 1

Query: 1   MVNVSNPILIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGSSATPMAVKLICSSNLPCDE 60
           M NV NP+ +DQEYCPWNQC+ K PSK+KIS VSFKNIRG+SATP+ VKL CSS +PC++
Sbjct: 297 MNNVQNPVAVDQEYCPWNQCSLKAPSKVKISDVSFKNIRGTSATPVVVKLACSSGIPCEK 356

Query: 61  VKVANIDLVYNGIEGSITSQCMNVKPIISGIQNPQMC 98
           V++A+I+LVY+G EG   SQC NVKPIISGI +   C
Sbjct: 357 VELADINLVYSGSEGPAKSQCSNVKPIISGIMSASGC 393

BLAST of Cla015662 vs. NCBI nr
Match: gi|659111053|ref|XP_008455553.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 191.0 bits (484), Expect = 9.7e-46
Identity = 89/99 (89.90%), Postives = 97/99 (97.98%), Query Frame = 1

Query: 1   MVNVSNPILIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGSSATPMAVKLICSSNLPCDE 60
           MVNVSNPILIDQEYCPWNQCNRK+PSKIKI+KVSFKNIRGSSATP+AVKLICSSNLPC+E
Sbjct: 300 MVNVSNPILIDQEYCPWNQCNRKIPSKIKINKVSFKNIRGSSATPVAVKLICSSNLPCEE 359

Query: 61  VKVANIDLVYNGIEGSITSQCMNVKPIISGIQNPQMCSS 100
           VKVANIDLVYNGI+GS+TS+CMNVKPIISG QNP +CSS
Sbjct: 360 VKVANIDLVYNGIKGSLTSECMNVKPIISGTQNPPICSS 398

BLAST of Cla015662 vs. NCBI nr
Match: gi|778730103|ref|XP_011659699.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 1.7e-45
Identity = 89/99 (89.90%), Postives = 97/99 (97.98%), Query Frame = 1

Query: 1   MVNVSNPILIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGSSATPMAVKLICSSNLPCDE 60
           MVNVSNPILIDQEYCPWNQCNR++PS IKI+KVSFKNIRGSSATP+AVKLICSSNLPC+E
Sbjct: 284 MVNVSNPILIDQEYCPWNQCNREIPSNIKINKVSFKNIRGSSATPVAVKLICSSNLPCEE 343

Query: 61  VKVANIDLVYNGIEGSITSQCMNVKPIISGIQNPQMCSS 100
           VKVANIDLVYNGI+GSITS+CMNVKPIISGIQNP +CSS
Sbjct: 344 VKVANIDLVYNGIKGSITSECMNVKPIISGIQNPPICSS 382

BLAST of Cla015662 vs. NCBI nr
Match: gi|700188231|gb|KGN43464.1| (hypothetical protein Csa_7G037910 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 1.7e-45
Identity = 89/99 (89.90%), Postives = 97/99 (97.98%), Query Frame = 1

Query: 1   MVNVSNPILIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGSSATPMAVKLICSSNLPCDE 60
           MVNVSNPILIDQEYCPWNQCNR++PS IKI+KVSFKNIRGSSATP+AVKLICSSNLPC+E
Sbjct: 299 MVNVSNPILIDQEYCPWNQCNREIPSNIKINKVSFKNIRGSSATPVAVKLICSSNLPCEE 358

Query: 61  VKVANIDLVYNGIEGSITSQCMNVKPIISGIQNPQMCSS 100
           VKVANIDLVYNGI+GSITS+CMNVKPIISGIQNP +CSS
Sbjct: 359 VKVANIDLVYNGIKGSITSECMNVKPIISGIQNPPICSS 397

BLAST of Cla015662 vs. NCBI nr
Match: gi|659067859|ref|XP_008441641.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 4.0e-39
Identity = 76/100 (76.00%), Postives = 89/100 (89.00%), Query Frame = 1

Query: 1   MVNVSNPILIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGSSATPMAVKLICSSNLPCDE 60
           MVNVSNP++IDQEYCPWNQCNRKVPSKIKISKVSFKNIRG+SATP+AVK++CS + PC+E
Sbjct: 296 MVNVSNPVIIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKIVCSKSNPCEE 355

Query: 61  VKVANIDLVYNGIEGSITSQCMNVKPIISGIQNPQMCSSP 101
           V+VA+IDL Y+G EG I SQC NVKP+ISG QNP +C  P
Sbjct: 356 VEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICGEP 395

BLAST of Cla015662 vs. NCBI nr
Match: gi|659097569|ref|XP_008449697.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 168.3 bits (425), Expect = 6.8e-39
Identity = 77/100 (77.00%), Postives = 89/100 (89.00%), Query Frame = 1

Query: 1   MVNVSNPILIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGSSATPMAVKLICSSNLPCDE 60
           MVNVSNP+LIDQEYCPWNQCNRKVPSKIKISKVSFKNIRG+SATP+AVKL+CS + PC+ 
Sbjct: 295 MVNVSNPVLIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEG 354

Query: 61  VKVANIDLVYNGIEGSITSQCMNVKPIISGIQNPQMCSSP 101
           V+VA+IDL Y+G EG I SQC NVKP+ISG QNP +C+ P
Sbjct: 355 VEVADIDLTYSGSEGPIKSQCANVKPVISGKQNPPICAEP 394

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PGLR_GOSHI1.3e-2960.00Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1[more]
PGLR_GOSBA6.3e-2959.00Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1[more]
PGLR_OENOR2.0e-2757.14Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1[more]
PGLR_TOBAC1.7e-2652.58Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1[more]
PGLR_BRANA2.3e-2653.61Polygalacturonase OS=Brassica napus PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K3B7_CUCSA1.2e-4589.90Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037910 PE=3 SV=1[more]
E3VSV7_CUCPE2.4e-3570.00Polygalacturonase OS=Cucurbita pepo GN=PG1 PE=2 SV=1[more]
A0A0D2NBK5_GOSRA6.0e-3468.69Uncharacterized protein OS=Gossypium raimondii GN=B456_001G193800 PE=3 SV=1[more]
W9SBW1_9ROSA8.6e-3367.68Uncharacterized protein OS=Morus notabilis GN=L484_020040 PE=3 SV=1[more]
Q9MBB7_SALGI2.8e-3165.98Polygalacturonase OS=Salix gilgiana GN=SgPG4 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
gi|659111053|ref|XP_008455553.1|9.7e-4689.90PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
gi|778730103|ref|XP_011659699.1|1.7e-4589.90PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
gi|700188231|gb|KGN43464.1|1.7e-4589.90hypothetical protein Csa_7G037910 [Cucumis sativus][more]
gi|659067859|ref|XP_008441641.1|4.0e-3976.00PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
gi|659097569|ref|XP_008449697.1|6.8e-3977.00PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000743Glyco_hydro_28
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
molecular_function GO:0016829 lyase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla015662Cla015662.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 1..85
score: 2.0
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 1..98
score: 3.21
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 1..98
score: 1.2
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 1..99
score: 1.4
NoneNo IPR availablePANTHERPTHR31375:SF37PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 1..99
score: 1.4

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla015662Cla97C02G029040Watermelon (97103) v2wmwmbB317
Cla015662Cp4.1LG15g07010Cucurbita pepo (Zucchini)cpewmB268
The following gene(s) are paralogous to this gene:

None