MELO3C024092 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024092
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3
Location	chr1 : 8852908 .. 8857302 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCATCTGGAAACTTGCATTCTCTTGGGTTTTTTTTTTTTCTACAGGTCTTCTAGTGTCTGCTTCGTATCTTTAAAGATGGTATGTTCCTGAACTTCTGTTTTTCATCTGTTCCTGTTTTCGTTTTGGTCCTTGATTAATTTTGCTCGTGTAACTTCAGAGTGTATTTATTCCTTTAATGTCTCCGATAAATTGAATTATTTCCTTCAAATGCGTGGTTCTCACCTGTTGTTTTTTCTTTTCCCTTCATGGGTGTGCTCTAATCGATATTTTTTATTGCAGCTTCCTCTTTCCCTCCTAAAGACTGCTCAAGGACACCCAATGGTAAGGGTTTTCTTTCAGTTGCCTTTCTGTTAATGGGTGAGCTTACATGCACTTAGAGTAAGTTCAAGAGAGAGTATCACATTTGATTGCTACTTTGAAGTTTCGATTGATTTGATATCCAGATAGGTGGGATAATACTTTTCAAATTGAGCCCCTGGAGCTTCTATTATGGTTATTATTATCATTATTATTTTAGATTTTTTTGCTTGGCTAAATCTTTAGTGCCACCACAGTGATACATAGTGGTTGTATATGGCTTTACTTTGTCTTGAGCTATTCTGGCTATTGTCAAGGACTTCTACTTTAGGATTTCGTTTATGTGCTTGTTCTAAAAATGTATAATTTCTGTGTTGCAACAGTTGGTGGAATTAAAAAACGGTGAGACATACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATTCATCTTCGGGAAGTCATCTGCACTTCTAAAGTAATGCACTTCTATTTTATGGATGATTTTTTTCTCTTTTGGATTTTTCTTCTTTCTCTAGGAGTTTGAACTTAAAATGACCATGTTTTCCAATTATCAAATGTCAGGACGGTGATCGGTTTTGGCGAATGCCCGAATTTTATATCCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTATTCATGAAAACTGTTGCCTTTTATACTGTTTTATTGTGTGATGTTTGATGCATAAGAGTACCTTACATATAATATGTGGTTGTTGAACAAAAAAGTCAGTTGCCTTAATTTAGTTCTTTTTCCACTTCTATCACATGCTTCTCGGCCGCATCTCATTTTTATTTCTTGGTTTCTAATATTATTTCCTCTCTTCTTTGACTTGTACTAAACTTTGTCATCATCTTTAACTTGCATGTGATCTTCTCGGCATCCACCAAAAAGTTATTTAATAAAACTGTTATTTTTCTTTCTGGTGATTTAAGTTATATCACTCCCTTTTTGTAATTTGCCCTAACTATAGTAACTTCCCTAGTTTTTGATCAGCTGTTTCAGTATTGTTAGCTCTTTCATACATGCATGGACCTGAGTGTACACTTACATGCAATCCTGAAATGTTCTATTTCACTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAAGTAGGACTTTAGAACGCATTACACCTTTTTGCATAACTACCTTGTTTGAATTTTCATAAATAAAATTTCTTAAACGTTACGCGTTTTTAATAAATTTTATGACTTAAACCACTTGTTCTATATTTAGTAATGACTTCGATTCAGTATAAGGAGTTGGGTCGTTACACTTATTTTGTATTGTTTTTCAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGGTATATTGTTTATGCATTTTATAATATATAACGATTGTCAAATGAAATAAAAAGGTAAAATGTATTTGAATTTGGGAAATTTGAAATTAAAAAACCAATTAGTTCTTGAAGTTCTCCCAAAAAAAAATTAATAGATTAACTCTTAAATCTTTTCTTTCTGGAAACTTGTACAATATCCATGTTGTAAATCTGAAAAAAGATGGACATTCGATAACATCTCATAAAATACGAAATACTTTTTTTGCTAATGTTTGCATGTATTGGACTCCTGATTGTCCAGAACAACTATGCTATTAGAGACCAAGATAAATTATGCTATTATAGACCAAGATTAATTTCTCCTTTGCCCTTGGTTTCTGAAAAGTAAGGAAACTGATGCTTTGACACCAAATTTTCAGATAGGAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGGGAGGATGGTCCAGGTGGCAGGTCAGCTAAAGGAATGGGGCGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGTGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCTGGTGCCATCAGAGGTAAACTAAACTGA

mRNA sequence

GATCATCTGGAAACTTGCATTCTCTTGGGTTTTTTTTTTTTCTACAGGTCTTCTAGTGTCTGCTTCGTATCTTTAAAGATGCTTCCTCTTTCCCTCCTAAAGACTGCTCAAGGACACCCAATGTTGGTGGAATTAAAAAACGGTGAGACATACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATTCATCTTCGGGAAGTCATCTGCACTTCTAAAGACGGTGATCGGTTTTGGCGAATGCCCGAATTTTATATCCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGATAGGAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGGGAGGATGGTCCAGGTGGCAGGTCAGCTAAAGGAATGGGGCGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGTGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCTGGTGCCATCAGAGGTAAACTAAACTGA

Coding sequence (CDS)

ATGCTTCCTCTTTCCCTCCTAAAGACTGCTCAAGGACACCCAATGTTGGTGGAATTAAAAAACGGTGAGACATACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATTCATCTTCGGGAAGTCATCTGCACTTCTAAAGACGGTGATCGGTTTTGGCGAATGCCCGAATTTTATATCCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGATAGGAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGGGAGGATGGTCCAGGTGGCAGGTCAGCTAAAGGAATGGGGCGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGTGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCTGGTGCCATCAGAGGTAAACTAAACTGA

Protein sequence

MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDDGAKAASGGRGKGGPGGKPGAIRGKLN*

Homology

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BLAST of MELO3C024092 vs. Swiss-Prot
Match: LSM4_TOBAC (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.2e-61
Identity = 116/144 (80.56%), Postives = 118/144 (81.94%), Query Frame = 1


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE Y
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGR-GREDGPGGRSAKGMGRGFD 120
           +RGNTIKYLRVPDEVIDKVQEE KSR DRKP GVGR R R GR+D   GR  KG+GRG D
Sbjct: 61  VRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRGMD 120

Query: 121 DGAKAASGGRGKGGPGGKPGAIRG 144
           DG    + GRGKGGP  K G   G
Sbjct: 121 DG---GAKGRGKGGPSAKSGGRGG 141

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BLAST of MELO3C024092 vs. Swiss-Prot
Match: LSM4_ORYSJ (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica GN=Os01g0256900 PE=2 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 9.2e-61
Identity = 119/145 (82.07%), Postives = 123/145 (84.83%), Query Frame = 1


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPE Y
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEET-KSRADRKPLGVGRGRGRGR-EDGPGGRSAKGMGRGF 120
           IRGNTIKYLRVPDEVIDKVQEET KSR+DR+P GVGRGRGRG     PGGR   G+GRG 
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRGDIGTKPGGR---GIGRGQ 120

Query: 121 DDGAKAASGGRGKGGPGGKPGAIRG 144
           DDG     GGRG+GG GGK G I+G
Sbjct: 121 DDGGSKGGGGRGRGGIGGK-GGIKG 141

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BLAST of MELO3C024092 vs. Swiss-Prot
Match: LSM4_FAGSY (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.6e-60
Identity = 115/145 (79.31%), Postives = 119/145 (82.07%), Query Frame = 1


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60
           MLPLSLLKTAQGHPMLVELK+GETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP+ Y
Sbjct: 1   MLPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRG-FD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKP GVGRGRGRGRE+G G R  +G GR    
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREEGSGARQVRGAGRDVMM 120

Query: 121 DGAKAASGGRGKGGPGGKPGAIRGK 145
             AKA    RG+G   GK G   G+
Sbjct: 121 QVAKAWVEVRGRGASAGKSGGRGGR 145

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BLAST of MELO3C024092 vs. Swiss-Prot
Match: LSM4_ARATH (Sm-like protein LSM4 OS=Arabidopsis thaliana GN=LSM4 PE=1 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.4e-55
Identity = 107/132 (81.06%), Postives = 110/132 (83.33%), Query Frame = 1


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE Y
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEE K+R DRKP GVGRGRGRG +DG     A+G GRG   
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG----GARGRGRGTSM 120

Query: 121 GAKAASGGRGKG 133
           G    + G G+G
Sbjct: 121 GKMGGNRGAGRG 127

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BLAST of MELO3C024092 vs. Swiss-Prot
Match: LSM4_MOUSE (U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4 PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.1e-44
Identity = 91/145 (62.76%), Postives = 101/145 (69.66%), Query Frame = 1


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60
           MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPE Y
Sbjct: 1   MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRG-FD 120
           IRG+TIKYLR+PDE+ID V+EE            GRGRG  ++    GR   G GRG F 
Sbjct: 61  IRGSTIKYLRIPDEIIDMVREEAAK---------GRGRGGPQQKQQKGRGMGGAGRGVFG 120

Query: 121 DGAKAASGGRGKGGPGGKPGAIRGK 145
              +    G G+G P  KPG   GK
Sbjct: 121 GRGRGGIPGAGRGQPEKKPGRQAGK 136

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BLAST of MELO3C024092 vs. TrEMBL
Match: A0A0A0L3Q6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G486190 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 2.7e-75
Identity = 138/142 (97.18%), Postives = 138/142 (97.18%), Query Frame = 1


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE Y
Sbjct: 96  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 155

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG R AKGMGRGFDD
Sbjct: 156 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 215

Query: 121 GAKAASGGRGKGGPGGKPGAIR 143
           GAKAASGGRGKGGPGGKPGA R
Sbjct: 216 GAKAASGGRGKGGPGGKPGANR 237

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BLAST of MELO3C024092 vs. TrEMBL
Match: A0A0A0K9I4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G302350 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 2.7e-75
Identity = 138/142 (97.18%), Postives = 138/142 (97.18%), Query Frame = 1


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE Y
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG R AKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGAIR 143
           GAKAASGGRGKGGPGGKPGA R
Sbjct: 121 GAKAASGGRGKGGPGGKPGANR 142

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BLAST of MELO3C024092 vs. TrEMBL
Match: A0A0B2S9U8_GLYSO (Putative U6 snRNA-associated Sm-like protein LSm4 OS=Glycine soja GN=glysoja_002099 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.8e-71
Identity = 132/145 (91.03%), Postives = 135/145 (93.10%), Query Frame = 1


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE Y
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKP GVGRGRGRGREDGPGGR AKG+GRG DD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREDGPGGRPAKGIGRGLDD 120

Query: 121 -GAKAASGGRGKGGPGGKPGAIRGK 145
            GAK A GGRG+GGP GKPG  RG+
Sbjct: 121 GGAKGAGGGRGRGGPSGKPGGNRGR 145

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BLAST of MELO3C024092 vs. TrEMBL
Match: I1NB52_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.8e-71
Identity = 132/145 (91.03%), Postives = 135/145 (93.10%), Query Frame = 1


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE Y
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKP GVGRGRGRGREDGPGGR AKG+GRG DD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREDGPGGRPAKGIGRGLDD 120

Query: 121 -GAKAASGGRGKGGPGGKPGAIRGK 145
            GAK A GGRG+GGP GKPG  RG+
Sbjct: 121 GGAKGAGGGRGRGGPSGKPGGNRGR 145

[Close]

BLAST of MELO3C024092 vs. TrEMBL
Match: A0A0B2P7T6_GLYSO (Putative U6 snRNA-associated Sm-like protein LSm4 OS=Glycine soja GN=glysoja_010957 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 3.4e-70
Identity = 127/143 (88.81%), Postives = 130/143 (90.91%), Query Frame = 1


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE Y
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSR DRKP GVGRGRGRGREDGPGGR  KG+GRG D+
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRQPKGIGRGLDE 120

Query: 121 GAKAASGGRGKGGPGGKPGAIRG 144
           G     GGRG+GGPGGKPG  RG
Sbjct: 121 GGPKGQGGRGRGGPGGKPGGNRG 143

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BLAST of MELO3C024092 vs. TAIR10
Match: AT5G27720.1 (AT5G27720.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 215.7 bits (548), Expect = 1.9e-56
Identity = 107/132 (81.06%), Postives = 110/132 (83.33%), Query Frame = 1


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE Y
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEE K+R DRKP GVGRGRGRG +DG     A+G GRG   
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG----GARGRGRGTSM 120

Query: 121 GAKAASGGRGKG 133
           G    + G G+G
Sbjct: 121 GKMGGNRGAGRG 127

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BLAST of MELO3C024092 vs. TAIR10
Match: AT1G20580.1 (AT1G20580.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-14
Identity = 47/138 (34.06%), Postives = 72/138 (52.17%), Query Frame = 1


Query: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFYI 61
           +P+ LL  A GH + VELK+GE Y G ++ C+   N  L ++  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDG-KVSQLEHVFI 66

Query: 62  RGNTIKYLRVPD-----EVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGR 121
           RG+ ++++ +PD      +  ++    K ++    LGVGRGRG  R     G+ A G GR
Sbjct: 67  RGSKVRFMVIPDILKHAPMFKRLDARIKGKS--SSLGVGRGRGAMR-----GKPAAGPGR 126

Query: 122 GFDDGAKAASGGRGKGGP 135
           G        +GGRG   P
Sbjct: 127 G--------TGGRGAVPP 128

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BLAST of MELO3C024092 vs. TAIR10
Match: AT1G76300.1 (AT1G76300.1 snRNP core protein SMD3)

HSP 1 Score: 74.7 bits (182), Expect = 5.3e-14
Identity = 44/134 (32.84%), Postives = 70/134 (52.24%), Query Frame = 1


Query: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFYI 61
           +P+ LL  + GH + VE+K+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 66

Query: 62  RGNTIKYLRVPDEVID-KVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDD 121
           RG+ +++L +PD + +  + ++ + +     LGVGRGRG           AKG GRG   
Sbjct: 67  RGSLVRFLVIPDMLKNAPMFKDVRGKGKSASLGVGRGRG-------AAMRAKGTGRG--- 125

Query: 122 GAKAASGGRGKGGP 135
                 GGRG   P
Sbjct: 127 ----TGGGRGAVPP 125

[Close]

BLAST of MELO3C024092 vs. NCBI nr
Match: gi|659123987|ref|XP_008461936.1| (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo])

HSP 1 Score: 300.4 bits (768), Expect = 1.7e-78
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGAIR 143
           GAKAASGGRGKGGPGGKPGAIR
Sbjct: 121 GAKAASGGRGKGGPGGKPGAIR 142

[Close]

BLAST of MELO3C024092 vs. NCBI nr
Match: gi|659109077|ref|XP_008454536.1| (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo])

HSP 1 Score: 292.7 bits (748), Expect = 3.5e-76
Identity = 139/142 (97.89%), Postives = 139/142 (97.89%), Query Frame = 1


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE Y
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGR AKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGAIR 143
           GAKAASGGRGKGGPGGKPGA R
Sbjct: 121 GAKAASGGRGKGGPGGKPGANR 142

[Close]

BLAST of MELO3C024092 vs. NCBI nr
Match: gi|700199613|gb|KGN54771.1| (hypothetical protein Csa_4G486190 [Cucumis sativus])

HSP 1 Score: 289.3 bits (739), Expect = 3.9e-75
Identity = 138/142 (97.18%), Postives = 138/142 (97.18%), Query Frame = 1


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE Y
Sbjct: 96  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 155

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG R AKGMGRGFDD
Sbjct: 156 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 215

Query: 121 GAKAASGGRGKGGPGGKPGAIR 143
           GAKAASGGRGKGGPGGKPGA R
Sbjct: 216 GAKAASGGRGKGGPGGKPGANR 237

[Close]

BLAST of MELO3C024092 vs. NCBI nr
Match: gi|778694870|ref|XP_011653886.1| (PREDICTED: sm-like protein LSM4 [Cucumis sativus])

HSP 1 Score: 289.3 bits (739), Expect = 3.9e-75
Identity = 138/142 (97.18%), Postives = 138/142 (97.18%), Query Frame = 1


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE Y
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG R AKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGAIR 143
           GAKAASGGRGKGGPGGKPGA R
Sbjct: 121 GAKAASGGRGKGGPGGKPGANR 142

[Close]

BLAST of MELO3C024092 vs. NCBI nr
Match: gi|657955072|ref|XP_008368996.1| (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Malus domestica])

HSP 1 Score: 278.1 bits (710), Expect = 8.9e-72
Identity = 130/143 (90.91%), Postives = 134/143 (93.71%), Query Frame = 1


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE Y
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETK+R+DRKP GVGRGRGRGREDGPGGR AKG+GRG DD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKNRSDRKPPGVGRGRGRGREDGPGGRQAKGIGRGLDD 120

Query: 121 GAKAASGGRGKGGPGGKPGAIRG 144
           GAK A GGRG+GGPGGK G  RG
Sbjct: 121 GAKGAGGGRGRGGPGGKAGGSRG 143

The following BLAST results are available for this feature:

BLAST of MELO3C024092 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSM4_TOBAC	3.2e-61	80.56	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1	[more]
LSM4_ORYSJ	9.2e-61	82.07	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonic...	[more]
LSM4_FAGSY	4.6e-60	79.31	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=...	[more]
LSM4_ARATH	3.4e-55	81.06	Sm-like protein LSM4 OS=Arabidopsis thaliana GN=LSM4 PE=1 SV=1	[more]
LSM4_MOUSE	2.1e-44	62.76	U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4 PE=1 SV=1	[more]

BLAST of MELO3C024092 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3Q6_CUCSA	2.7e-75	97.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G486190 PE=4 SV=1	[more]
A0A0A0K9I4_CUCSA	2.7e-75	97.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G302350 PE=4 SV=1	[more]
A0A0B2S9U8_GLYSO	1.8e-71	91.03	Putative U6 snRNA-associated Sm-like protein LSm4 OS=Glycine soja GN=glysoja_002...	[more]
I1NB52_SOYBN	1.8e-71	91.03	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2P7T6_GLYSO	3.4e-70	88.81	Putative U6 snRNA-associated Sm-like protein LSm4 OS=Glycine soja GN=glysoja_010...	[more]

BLAST of MELO3C024092 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27720.1	1.9e-56	81.06	Small nuclear ribonucleoprotein family protein	[more]
AT1G20580.1	1.8e-14	34.06	Small nuclear ribonucleoprotein family protein	[more]
AT1G76300.1	5.3e-14	32.84	snRNP core protein SMD3	[more]

BLAST of MELO3C024092 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659123987\|ref\|XP_008461936.1\|	1.7e-78	100.00	PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo]	[more]
gi\|659109077\|ref\|XP_008454536.1\|	3.5e-76	97.89	PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo]	[more]
gi\|700199613\|gb\|KGN54771.1\|	3.9e-75	97.18	hypothetical protein Csa_4G486190 [Cucumis sativus]	[more]
gi\|778694870\|ref\|XP_011653886.1\|	3.9e-75	97.18	PREDICTED: sm-like protein LSM4 [Cucumis sativus]	[more]
gi\|657955072\|ref\|XP_008368996.1\|	8.9e-72	90.91	PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf
IPR027141	LSm4/Sm_D1/D3

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
biological_process	GO:0006457	protein folding
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0051082	unfolded protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024092T1	MELO3C024092T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 6..70 score: 8.7
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..71 score: 7.5
IPR010920	LSM domain	unknown	SSF50182	Sm-like ribonucleoproteins	coord: 3..117 score: 1.99
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 1..143 score: 5.7
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 1..73 score: 4.5
None	No IPR available	PANTHER	PTHR23338:SF24	SUBFAMILY NOT NAMED	coord: 1..143 score: 5.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C024092	Cla016400	Watermelon (97103) v1	mewmB204
MELO3C024092	ClCG09G010120	Watermelon (Charleston Gray)	mewcgB181
MELO3C024092	Cla97C09G172870	Watermelon (97103) v2	mewmbB230
MELO3C024092	Bhi09G001281	Wax gourd	mewgoB258
MELO3C024092	Cucsa.079530	Cucumber (Gy14) v1	cgymeB085
MELO3C024092	CmaCh09G011170	Cucurbita maxima (Rimu)	cmameB017
MELO3C024092	CmaCh01G009760	Cucurbita maxima (Rimu)	cmameB396
MELO3C024092	CmoCh01G010140	Cucurbita moschata (Rifu)	cmomeB387
MELO3C024092	CmoCh09G011260	Cucurbita moschata (Rifu)	cmomeB008
MELO3C024092	Lsi02G019760	Bottle gourd (USVL1VR-Ls)	lsimeB189
MELO3C024092	Cp4.1LG06g07520	Cucurbita pepo (Zucchini)	cpemeB714
MELO3C024092	Cp4.1LG02g09130	Cucurbita pepo (Zucchini)	cpemeB505
MELO3C024092	Carg23306	Silver-seed gourd	carmeB0276
MELO3C024092	CsaV3_7G024630	Cucumber (Chinese Long) v3	cucmeB540

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024092	Cucumber (Gy14) v2	cgybmeB460
MELO3C024092	Cucurbita maxima (Rimu)	cmameB019
MELO3C024092	Cucurbita moschata (Rifu)	cmomeB006
MELO3C024092	Wild cucumber (PI 183967)	cpimeB528
MELO3C024092	Cucumber (Chinese Long) v2	cumeB525