Carg23306 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23306
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	U6 snRNA-associated Sm-like protein LSm4
Location	Cucurbita_argyrosperma_scaffold_188 : 174495 .. 177079 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATAATTTCTGTATTGCAACAGTTGGTGGAATTGAAAAATGGTGAGACTTACAATGGCCATTTGGTTAACTGCGATACATGGATGAACATTCATCTTCGGGAAGTCATCTGTACTTCTAAAGTATGCACGATGAACTTTTATCTTTTTCGTTTGTTTATATTTCTTTTTCTAGGAGTTTGAACTGATAATAACTTGGTTTTTCAATTATCAAATGTTAGGATGGTGACCGGTTTTGGCGAATGCCTGAATGTTATATTCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTATTCATGCAAGTTGTTGCCGTTCTTAAGTGTCTACTTGTGACTTTTGATATGTGGACCTTATATATATGCTTGCATAACCGAAAACACTCTATGTCTTCAAATTTAGTTCTTCTTTGTGAGATCCCACATCGGTTGGAGAGGCAAACGAAGAATTCTTTATAAGGATGTGGAAACCTCTCCCTAGTAAACGCGTTTTAAAACCTTGAGGGGAAGCCCAGAAGGGAAAGCCCAAAGAGGACAATATTTGCTAGCGGTGGGCTTGGGTTGTTACAAATGGTATCAGAGCCAGACACCAGGCGGTACGCCATTAAGGACGTTGGACCTCAAAGATGGGTGGATTGTGAGATCCCACATCGATTTAAGAGAAGAATAAGTGCCAGCGAGGACGTTGGGCCCCGAAGTGGGTGGATTGTGAGATCCCAGATCGATCAGAGAGGGGAACAAGTGCCAGTGAGGACGCTGGGCCCCAAAGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAGCAAAACATTCTTTATAAGGACGTGGAAACCTTTCCCTAGCAAACGCATTTTAAAACCTTGAGGAGAAGCCCGGAAAGGAAAGCCCAAAGAGGACAATGTCTGTTAGCGATGGGCTTGGACGGTTACATTCCTCCACTTCGGTCACATGCTTATCAGCCACATCTCATTTTGGTTTCTAGTTTCTAATTTTATTTCCACTCTTCTTTTACTTATCCTTTTACAACTTTGTTATCATCTTTTAACTTGTTTATATGATTTTATCCATCCATATCTACCAAAAAAGTTACTTATTAAAACTGTTCTTTGTTTTCTAAGGGTAGAAGTTATCATTCCCTTCTTTTACTTGTCCTAACCAGCTTAGTAAATGCGTACTAAGTTCTCATACAAACTGTTGCAATGTTTCTTGCTCTCTGTTTCACTAATTTTGTATTGCTTCTCAGGTTATTGATAAAGTTCAGGAAGAAACCAAAAGCCGTACAGGTATGCTGTTATGCTTACATTTGATAATGTTTTCATCTAGTAAACTCTTGATTTTCCATACACAACAAATGAGTCGAATAAACGACGCCATTAAAGACTAAGATCGATTTCTCTTTTTCCCTTGGTTTTGCCTAATTCGAGCGTTAGTATCAAGGAAACCGATGCTTTTACATTGTTTTTTTCAGATAGGAAACCTCCAGGTGTAGGGCGTGGGAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGAAGACCATCTAAAGGAATGGGGCGAGGCTTCGATGACGGTGCTAAAGCTGCTTCTGGAGGCCGTGGAAAGGGTAGCTCCGGTGGAAAACTCGGTGCCAACAGAGGTAAATAAACTGAATTGTTATTATTTATCGAACACGAATTTGTTGTTTCAGTCCCCAGTGGATAACAGTTTTGGTTCTTTTGTTCCCTGTAAAAACTATACCCATTATCTGTTCATGTATTCTTCATTTAGTTTTTCACCTTTAGAAACACTTGGGCCAATTTTTTAAAACAAAATACACGAGTTTTTAAAACCGTTAACGTTTTTTGATTTTCTAACATTTGGCTATGGTTTCGAGTTGACTGTGACAAAAAAACCATGTTATCAAATGGACTTTTTACTCTCTTATCGATGTCGGCGCTATCATATTCACTAAATAATGCCATGTTCGTTTATTTTAATTTAGTTGGAGGCAGGGGCCGAGGGTGATCGGAGTGAAACGGGTAACAGATGAGATGGACTAACTACATTATGTAAGCCCTGCTCAGTTTTCTCGTCAGTGGCTATGTGTTTTCATTTTTATGCATTTTCTTTTCGTCTGCATTCTGAAGTGAATATTTATGTGATTTTCATGCCAGCCCTCTACCAAAGTTGTACACGACACGAACAGTTCAGTTTATTGGTTCGTAGTCTTGGGAATAGGTATATAGATAGTCTCGTGTTTTCGAGATGTTTTAGAGGGGTTGGGAGGCTATATGTGATCAATTTAGGTACACAGAATATTTGAAAAGGTATTATGATCAAATTCTAAACACCTGTTAAGTAGGTGTTTATGGTTGATATCATGAATGCTCAAAATCTAGGATTGATCAGTTCTGGGAGTATCATCATCAGATAATCAATGATATAGAGGTTCTGTTCATCTAAGATGCCTTGACTCTTATGAAATCTATCTGATATGTATGTCATTGTTAAGACACTTCTAACAATGCCAATGTGCCATACTCGAGGGTGATGATGCCGGTGGCTATGGGCGACTATGGCAAACGTATCGACTCGTGA

mRNA sequence

TATATAATTTCTGTATTGCAACAGTTGGTGGAATTGAAAAATGGTGAGACTTACAATGGCCATTTGGTTAACTGCGATACATGGATGAACATTCATCTTCGGGAAGTCATCTGTACTTCTAAAGATGGTGACCGGTTTTGGCGAATGCCTGAATGTTATATTCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGATAAAGTTCAGGAAGAAACCAAAAGCCGTACAGATAGGAAACCTCCAGGTGTAGGGCGTGGGAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGAAGACCATCTAAAGGAATGGGGCGAGGCTTCGATGACGGTGCTAAAGCTGCTTCTGGAGGCCGTGGAAAGGGTAGCTCCGGTGGAAAACTCGGTGCCAACAGAGACACTTCTAACAATGCCAATGTGCCATACTCGAGGGTGATGATGCCGGTGGCTATGGGCGACTATGGCAAACGTATCGACTCGTGA

Coding sequence (CDS)

TATATAATTTCTGTATTGCAACAGTTGGTGGAATTGAAAAATGGTGAGACTTACAATGGCCATTTGGTTAACTGCGATACATGGATGAACATTCATCTTCGGGAAGTCATCTGTACTTCTAAAGATGGTGACCGGTTTTGGCGAATGCCTGAATGTTATATTCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGATAAAGTTCAGGAAGAAACCAAAAGCCGTACAGATAGGAAACCTCCAGGTGTAGGGCGTGGGAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGAAGACCATCTAAAGGAATGGGGCGAGGCTTCGATGACGGTGCTAAAGCTGCTTCTGGAGGCCGTGGAAAGGGTAGCTCCGGTGGAAAACTCGGTGCCAACAGAGACACTTCTAACAATGCCAATGTGCCATACTCGAGGGTGATGATGCCGGTGGCTATGGGCGACTATGGCAAACGTATCGACTCGTGA

Protein sequence

YIISVLQQLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDDGAKAASGGRGKGSSGGKLGANRDTSNNANVPYSRVMMPVAMGDYGKRIDS

Homology

[Close]

BLAST of Carg23306 vs. NCBI nr
Match: XP_022936003.1 (sm-like protein LSM4 [Cucurbita moschata] >XP_022936004.1 sm-like protein LSM4 [Cucurbita moschata] >XP_022936005.1 sm-like protein LSM4 [Cucurbita moschata] >XP_022936006.1 sm-like protein LSM4 [Cucurbita moschata])

HSP 1 Score: 175.6 bits (444), Expect = 1.3e-40
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 9   LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 68
           LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV
Sbjct: 16  LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75

Query: 69  IDKVQEETKSRTDRKPPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSG 128
           IDKVQEETKSRTDRKPPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSG
Sbjct: 76  IDKVQEETKSRTDRKPPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSG 135

Query: 129 GKLGANR 136
           GKLGANR
Sbjct: 136 GKLGANR 142

[Close]

BLAST of Carg23306 vs. NCBI nr
Match: XP_004494370.1 (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cicer arietinum])

HSP 1 Score: 173.7 bits (439), Expect = 5.1e-40
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 9  LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 68
          LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV
Sbjct: 16 LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75

Query: 69 IDKVQEETKSRTDRKPPG 87
          IDKVQEETKSRTDRKPPG
Sbjct: 76 IDKVQEETKSRTDRKPPG 93

[Close]

BLAST of Carg23306 vs. NCBI nr
Match: NP_001339618.1 (small nuclear ribonucleoprotein family protein [Glycine max] >KHN03728.1 Putative U6 snRNA-associated Sm-like protein LSm4 [Glycine soja] >KRH31884.1 hypothetical protein GLYMA_10G019100 [Glycine max])

HSP 1 Score: 173.7 bits (439), Expect = 5.1e-40
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 9  LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 68
          LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV
Sbjct: 16 LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75

Query: 69 IDKVQEETKSRTDRKPPG 87
          IDKVQEETKSRTDRKPPG
Sbjct: 76 IDKVQEETKSRTDRKPPG 93

[Close]

BLAST of Carg23306 vs. NCBI nr
Match: XP_025980084.1 (putative sm-like protein LSM4 isoform X1 [Glycine max] >KRH71563.1 hypothetical protein GLYMA_02G155300 [Glycine max])

HSP 1 Score: 173.7 bits (439), Expect = 5.1e-40
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 9  LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 68
          LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV
Sbjct: 16 LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75

Query: 69 IDKVQEETKSRTDRKPPG 87
          IDKVQEETKSRTDRKPPG
Sbjct: 76 IDKVQEETKSRTDRKPPG 93

[Close]

BLAST of Carg23306 vs. NCBI nr
Match: KHN46573.1 (Putative U6 snRNA-associated Sm-like protein LSm4 [Glycine soja])

HSP 1 Score: 173.7 bits (439), Expect = 5.1e-40
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 9  LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 68
          LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV
Sbjct: 2  LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 61

Query: 69 IDKVQEETKSRTDRKPPG 87
          IDKVQEETKSRTDRKPPG
Sbjct: 62 IDKVQEETKSRTDRKPPG 79

[Close]

BLAST of Carg23306 vs. TAIR10
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 166.0 bits (419), Expect = 1.9e-41
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 9  LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 68
          LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV
Sbjct: 16 LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75

Query: 69 IDKVQEETKSRTDRKPPG 87
          IDKVQEE K+RTDRKPPG
Sbjct: 76 IDKVQEE-KTRTDRKPPG 92

[Close]

BLAST of Carg23306 vs. TAIR10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 51.2 bits (121), Expect = 6.9e-07
Identity = 20/57 (35.09%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 10 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD 67
          VELK+GE Y G ++ C+   N  L ++  T+KDG +  ++   +IRG+ ++++ +PD
Sbjct: 22 VELKSGELYRGSMIECEDNWNCQLEDITYTAKDG-KVSQLEHVFIRGSKVRFMVIPD 77

[Close]

BLAST of Carg23306 vs. TAIR10
Match: AT1G76300.1 (snRNP core protein SMD3)

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 20/57 (35.09%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 10 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD 67
          VE+K+GE Y G ++ C+   N  L  +  T+KDG +  ++   +IRG+ +++L +PD
Sbjct: 22 VEMKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSLVRFLVIPD 77

[Close]

BLAST of Carg23306 vs. Swiss-Prot
Match: sp|Q43582|LSM4_TOBAC (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.3e-42
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 9  LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 68
          LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY+RGNTIKYLRVPDEV
Sbjct: 16 LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYVRGNTIKYLRVPDEV 75

Query: 69 IDKVQEETKSRTDRKPPG 87
          IDKVQEE KSRTDRKPPG
Sbjct: 76 IDKVQEEAKSRTDRKPPG 93

[Close]

BLAST of Carg23306 vs. Swiss-Prot
Match: sp|Q9ZRU9|LSM4_FAGSY (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica OX=28930 GN=LSM4 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.4e-41
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 9  LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 68
          LVELK+GETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP+CYIRGNTIKYLRVPDEV
Sbjct: 16 LVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYIRGNTIKYLRVPDEV 75

Query: 69 IDKVQEETKSRTDRKPPG 87
          IDKVQEETKSR DRKPPG
Sbjct: 76 IDKVQEETKSRADRKPPG 93

[Close]

BLAST of Carg23306 vs. Swiss-Prot
Match: sp|F4K4E3|LSM4_ARATH (Sm-like protein LSM4 OS=Arabidopsis thaliana OX=3702 GN=LSM4 PE=1 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.5e-40
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 9  LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 68
          LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV
Sbjct: 16 LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75

Query: 69 IDKVQEETKSRTDRKPPG 87
          IDKVQEE K+RTDRKPPG
Sbjct: 76 IDKVQEE-KTRTDRKPPG 92

[Close]

BLAST of Carg23306 vs. Swiss-Prot
Match: sp|Q9LGE6|LSM4_ORYSJ (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0256900 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 5.9e-40
Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 9  LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 68
          LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECYIRGNTIKYLRVPDEV
Sbjct: 16 LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDEV 75

Query: 69 IDKVQEET-KSRTDRKPPG 87
          IDKVQEET KSR+DR+PPG
Sbjct: 76 IDKVQEETSKSRSDRRPPG 94

[Close]

BLAST of Carg23306 vs. Swiss-Prot
Match: sp|Q3ZBK6|LSM4_BOVIN (U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=9913 GN=LSM4 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.9e-31
Identity = 57/71 (80.28%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 9  LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 68
          LVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECYIRG+TIKYLR+PDE+
Sbjct: 16 LVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEI 75

Query: 69 IDKVQEETKSR 80
          ID V+EE  ++
Sbjct: 76 IDMVKEEVVAK 86

[Close]

BLAST of Carg23306 vs. TrEMBL
Match: tr|A0A0R4J2Q5|A0A0R4J2Q5_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_02G155300 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.4e-40
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 9  LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 68
          LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV
Sbjct: 16 LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75

Query: 69 IDKVQEETKSRTDRKPPG 87
          IDKVQEETKSRTDRKPPG
Sbjct: 76 IDKVQEETKSRTDRKPPG 93

[Close]

BLAST of Carg23306 vs. TrEMBL
Match: tr|I1JFI2|I1JFI2_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_02G155300 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.4e-40
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 9  LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 68
          LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV
Sbjct: 16 LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75

Query: 69 IDKVQEETKSRTDRKPPG 87
          IDKVQEETKSRTDRKPPG
Sbjct: 76 IDKVQEETKSRTDRKPPG 93

[Close]

BLAST of Carg23306 vs. TrEMBL
Match: tr|A0A0R4J488|A0A0R4J488_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100500134 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.4e-40
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 9  LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 68
          LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV
Sbjct: 16 LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75

Query: 69 IDKVQEETKSRTDRKPPG 87
          IDKVQEETKSRTDRKPPG
Sbjct: 76 IDKVQEETKSRTDRKPPG 93

[Close]

BLAST of Carg23306 vs. TrEMBL
Match: tr|A0A0B2SP07|A0A0B2SP07_GLYSO (Putative U6 snRNA-associated Sm-like protein LSm4 OS=Glycine soja OX=3848 GN=glysoja_035206 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.4e-40
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 9  LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 68
          LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV
Sbjct: 2  LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 61

Query: 69 IDKVQEETKSRTDRKPPG 87
          IDKVQEETKSRTDRKPPG
Sbjct: 62 IDKVQEETKSRTDRKPPG 79

[Close]

BLAST of Carg23306 vs. TrEMBL
Match: tr|A0A151U4I6|A0A151U4I6_CAJCA (Putative U6 snRNA-associated Sm-like protein LSm4 OS=Cajanus cajan OX=3821 GN=KK1_006874 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.4e-40
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 9  LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 68
          LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV
Sbjct: 2  LVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 61

Query: 69 IDKVQEETKSRTDRKPPG 87
          IDKVQEETKSRTDRKPPG
Sbjct: 62 IDKVQEETKSRTDRKPPG 79

The following BLAST results are available for this feature:

BLAST of Carg23306 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936003.1	1.3e-40	100.00	sm-like protein LSM4 [Cucurbita moschata] >XP_022936004.1 sm-like protein LSM4 [...	[more]
XP_004494370.1	5.1e-40	100.00	PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cicer arietinum]	[more]
NP_001339618.1	5.1e-40	100.00	small nuclear ribonucleoprotein family protein [Glycine max] >KHN03728.1 Putativ...	[more]
XP_025980084.1	5.1e-40	100.00	putative sm-like protein LSM4 isoform X1 [Glycine max] >KRH71563.1 hypothetical ...	[more]
KHN46573.1	5.1e-40	100.00	Putative U6 snRNA-associated Sm-like protein LSm4 [Glycine soja]	[more]

BLAST of Carg23306 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27720.1	1.9e-41	97.44	Small nuclear ribonucleoprotein family protein	[more]
AT1G20580.1	6.9e-07	35.09	Small nuclear ribonucleoprotein family protein	[more]
AT1G76300.1	1.2e-06	35.09	snRNP core protein SMD3	[more]

BLAST of Carg23306 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q43582\|LSM4_TOBAC	8.3e-42	97.44	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum OX=4097 P...	[more]
sp\|Q9ZRU9\|LSM4_FAGSY	5.4e-41	96.15	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica OX=28930 GN...	[more]
sp\|F4K4E3\|LSM4_ARATH	3.5e-40	97.44	Sm-like protein LSM4 OS=Arabidopsis thaliana OX=3702 GN=LSM4 PE=1 SV=1	[more]
sp\|Q9LGE6\|LSM4_ORYSJ	5.9e-40	94.94	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonic...	[more]
sp\|Q3ZBK6\|LSM4_BOVIN	2.9e-31	80.28	U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=9913 GN=LSM4 PE=2 SV=1	[more]

BLAST of Carg23306 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0R4J2Q5\|A0A0R4J2Q5_SOYBN	3.4e-40	100.00	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_02G155300 PE=4 SV=1	[more]
tr\|I1JFI2\|I1JFI2_SOYBN	3.4e-40	100.00	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_02G155300 PE=4 SV=1	[more]
tr\|A0A0R4J488\|A0A0R4J488_SOYBN	3.4e-40	100.00	Uncharacterized protein OS=Glycine max OX=3847 GN=100500134 PE=4 SV=1	[more]
tr\|A0A0B2SP07\|A0A0B2SP07_GLYSO	3.4e-40	100.00	Putative U6 snRNA-associated Sm-like protein LSm4 OS=Glycine soja OX=3848 GN=gly...	[more]
tr\|A0A151U4I6\|A0A151U4I6_CAJCA	3.4e-40	100.00	Putative U6 snRNA-associated Sm-like protein LSm4 OS=Cajanus cajan OX=3821 GN=KK...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000956	nuclear-transcribed mRNA catabolic process
GO:0000398	mRNA splicing, via spliceosome
GO:0006396	RNA processing

Vocabulary: **INTERPRO**
Term	Definition
IPR010920	LSM_dom_sf
IPR034101	Lsm4
IPR027141	LSm4/Sm_D1/D3
IPR001163	LSM_dom_euk/arc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23306-RA	Carg23306-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 1..64 e-value: 7.9E-13 score: 58.6
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 9..63 e-value: 8.2E-14 score: 51.0
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 4..76 e-value: 3.0E-31 score: 108.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..145
None	No IPR available	PANTHER	PTHR23338:SF28	SM-LIKE PROTEIN LSM4	coord: 9..137
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 9..137
IPR034101	Sm-like protein Lsm4	CDD	cd01723	LSm4	coord: 9..70 e-value: 1.69467E-47 score: 150.034
IPR010920	LSM domain superfamily	SUPERFAMILY	SSF50182	Sm-like ribonucleoproteins	coord: 9..116

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23306	Cla016400	Watermelon (97103) v1	carwmB0266
Carg23306	Csa7G302350	Cucumber (Chinese Long) v2	carcuB0303
Carg23306	MELO3C024092	Melon (DHL92) v3.5.1	carmeB0276
Carg23306	ClCG09G010120	Watermelon (Charleston Gray)	carwcgB0267
Carg23306	CSPI07G12640	Wild cucumber (PI 183967)	carcpiB0307
Carg23306	Cucsa.079530	Cucumber (Gy14) v1	carcgyB0324
Carg23306	CmaCh01G009760	Cucurbita maxima (Rimu)	carcmaB0384
Carg23306	CmaCh09G011170	Cucurbita maxima (Rimu)	carcmaB0382
Carg23306	CmoCh01G010140	Cucurbita moschata (Rifu)	carcmoB0382
Carg23306	CmoCh09G011260	Cucurbita moschata (Rifu)	carcmoB0380
Carg23306	Cp4.1LG02g09130	Cucurbita pepo (Zucchini)	carcpeB0386
Carg23306	Cp4.1LG06g07520	Cucurbita pepo (Zucchini)	carcpeB0388
Carg23306	CsGy7G011740	Cucumber (Gy14) v2	carcgybB0291
Carg23306	MELO3C024092.2	Melon (DHL92) v3.6.1	carmedB0288
Carg23306	CsaV3_7G024630	Cucumber (Chinese Long) v3	carcucB0306
Carg23306	Cla97C09G172870	Watermelon (97103) v2	carwmbB0284
Carg23306	Bhi09G001281	Wax gourd	carwgoB0360

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23306	Bottle gourd (USVL1VR-Ls)	carlsiB248