CmaCh09G011170 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G011170
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	U6 snRNA-associated Sm-like protein LSm4
Location	Cma_Chr09 : 6169813 .. 6173302 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGAAACTCGAATTTTTTCAATATCGAACTGGTTCGGTTGTGTTTTCCTTCTGAGATAGTAAATATTGTTGGCGGCATCATCAGAACAATTAGATTTCTTCGTCCTACCTGCCCAATGAGTCGTTTCGACCGCTTTTGAATTCATATCGAAAAAAAATTCCTACTCTACTCAAGAACTTGATTCTCTTTAGGATCGAGAGCTTCGAAGGTTAGTGACTCTCTTGATTTCATTAGTCTACGAATCAATGTTTCTTTTCATGAATCTGTTCATCCAAATGTATGATCATCTGGAAACTTGAAATTCTTTTGGTTTTTTTTTTTCCCGACAGATTGGTTTCCGCTTCTCGATTCTGCTTCGTGTCCTTGAAGATGGTATGTTTCCCCTCGTGTTCTTATTTGGTCCTGTTGTTAAATTTTGCTGGTAGTGTAACCTAAGGGTGTGTTGATTCATTCAATGCCTTGGATTGATTGAACTATTTTGCTTCAAATTCGTCGTCGTTGCTTGTTTCTTTGCTCTTTTCCCTTCTTGGGTTCGCTCTAATCGATTTTTTGTTTTTACTTCAGCTTCCCCTTTCTCTCCTAAAGACTGCCCAAGGGCATCCAATGGTAAGGGCTTCTTTCAAATTCTTCGTTTTTATATTGTAAATATACGGGTGAGGTTACTGTTAGGAATCACGGATCTCCACAATGGTATGATATTGTCCACTTTGAACATAAGCTCTCATGACTTTGCTTTCGACTTCCCCAAAAAGCCTCGTACCAATGAAGATGTATTCCTTACTTATAAACCCATGATCATTCTCTATATTAGCCAATGTAGGACTCCCTCCCAACAATCTTCAACAATCCTCCCCTCGAACAACGTACACTATAGAGCCTCCCTTGTGGCCTATGGAGCCCTCGAATAGTCTCCCCTTAATCGAGGCTCAACTCCTTCTCTGGTGTCCTTCAACAAATTACACCCTTTGTTCGACACTTGAGTCACTTTTAACTACACCGCTCACAACTTCTTTGTTCGACATTTGAGGATTTTATTGACATGGCTAAGTTAAGGGCATGCCTCTGATACCGTGTTATGAATCAAGACTCTCCATAATGGTGTGATATTGTTCACTTTGAGCATGAACTCTCATGGCTTTGCTTTGGGCTTCTCTAAAAGGTCTCATACCAATGGAGAGATATTACTTATTTATAAACCCATGATCATTCCCTAAATTAGGTAACTGGTAGCTAAACTAAGTTCAATAGATAGACTTGCATATGATTGTCAAGAAACTTTCAACATTTGATATCCAGATAGTTTGTCATAATATGTTTTGAAGGAATCTAATGGCTAAATGTTACTATGCCAATACATGATGATTAATAAGGGCTTGGTCTGAGCTATTGAACTTATATTTTAGGACTTTTTATTATGAACTTGATTGAAAGATATATAATTTCTGCATTGCAACAGTTGGTGGAGTTGAAAAATGGTGAGACTTACAATGGCCATCTGGTTAACTGCGATACGTGGATGAACATTCATCTTCGGGAAGTCATCTGTACATCTAAAGTATGCACGATGAACTTTTATTGTTTTCGTTTGTTAATAGTTCCTTTTCTTGGAGTTTGAATTGATAATAACTTAGTGTTTCAATTATCAAATGTTAGGATGGTGACCGGTTTTGGCGAATGCCTGAATGTTATATCCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTATTCATGCAAGCTGTTGCTCTTCTTGAGTGTCTATTTGTGACTTTTGATGCATAAGAGGACCTTATATATATATGCTTGCAGAACCAAAAAAAACTCATATGTCTTCAAATTTAGTTATTCCTAGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAACATTCTTTATAAGGATGTGGAAACCTCTCCCCAGCAGGCGCGTTTTAAAACCTTGAGGGAAAGCCCGGAAGTGAAAGCCCAAAGAGGACAATATCGGCTACCGGTGGGCTTGGGTTATTACAAATGGTATCAGAGCCAGACACCAGGCAGTACGCCAGTAAGGACGTTGGACCTCGAAGATGGGTGGATTGTGAGATACCACATCGATTTAAGAGAAGAATGAGTGCCATCGAGGACTCTAGGCCCCGAAGTGGGTGGATTGTGAGATCCCAGATCGATTGGAGAGGAGAACAAGTGCCAGTGAGGACGCTGGGTCCCAAAGGGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGAGGAACAAAACATTCTTTATAAGGGTGTAGAAACCTCTCCCTAGCAGACGTGTTTTAAAAACCTTGAGGGGAAGTCCAAAAATGAAAGCCCAAAGAGGTCAATATCTGCTAGTGGTGGGCTTGAGCTATTATATTCCTCCACTTCTATCACATGCTTATCAGCCACATCTCATTTTGGTTTCTAGTTTCTAATTATATTTCCACTCTTCTTTTACTTATCCTTTTACAACTTTGTTATCATCTTTAACTTGTTTATATGATTTTATCCATCCATATCTACCAAAAAAGTTACTTATTTAAAACTGTTCTTTGTTTTCTAATCGTAGAAGTTATCATTCCCTTCTTTTACTTGTCCTAAGCAGCTTAGTAAATGCGTACTAAGTTTTCATACAAACTGTTGCAATATTTCATGCTCTCTGTTTCACTAGTTTTGTATTGCTTCTCAGGTTATCGATAAAGTTCAGGAAGAAACCAAAAGCCGTACAGGTATGCTGTTATGCTTACATTTGATAACATCCCATAAAGTACCAAATACATTTGATAATGTTTTCATGTAGTAAACTCTTGATTTTCCATACACAACGAATGAGTCGAATAAATGACGCCATTAAAGACTAAGATCGATTTCTCTTTTGCCATTGGTTTTGCCTAATTCGAGCGTTAGTATCAAGGAAACCGATGCTTGGACATTGTTTTTTCAGATAGGAAACCTCCAGGTGTAGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCCGGTGGAAGACCATCTAAAGGAATGGGGCGAGGCTTTGATGACGGTGCTAAAGCTGCTTCTGGAGGCCGTGGAAAGGGTGGCTCCGGTGGAAAACCTGGTGCCAACAGAGGTAAATTAAATTGAATCAGTATCATTTATGGAACATAAATTTGTTGTTTCAGTCCCCATTGGATAACAGTTTTGGTTCTTTTGTTCCCTGTAAAAACTATATCCATTATCTGTTCATGTATTCTTTATTTAGTTTTTCACCTTCAAAAACACTTGGCCAATTTTTTAAAACAAAATACACGAGTTCTTAAAATCGTTAACGTATTTTGATTTTCTAACATTTGGCTATGGGTTCGAGTTTACTGTGACAAAAAAATTATGTTATCAAATGGACTTTTTATTCTCTCTTATCGATGTCTGCGCCATCGTATTCACTAAATAATGCCATGTTCATTTATTTTAATTTAGTTGGAGGCAGGGGCCGAGGGTGA

mRNA sequence

ATGGATCGAAACTCGAATTTTTTCAATATCGAACTGGATCGAGAGCTTCGAAGATTGGTTTCCGCTTCTCGATTCTGCTTCGTGTCCTTGAAGATGCTTCCCCTTTCTCTCCTAAAGACTGCCCAAGGGCATCCAATGTTGGTGGAGTTGAAAAATGGTGAGACTTACAATGGCCATCTGGTTAACTGCGATACGTGGATGAACATTCATCTTCGGGAAGTCATCTGTACATCTAAAGATGGTGACCGGTTTTGGCGAATGCCTGAATGTTATATCCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATCGATAAAGTTCAGGAAGAAACCAAAAGCCGTACAGATAGGAAACCTCCAGGTGTAGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCCGGTGGAAGACCATCTAAAGGAATGGGGCGAGGCTTTGATGACGGTGCTAAAGCTGCTTCTGGAGGCCGTGGAAAGGGTGGCTCCGGTGGAAAACCTGGTGCCAACAGAGTTGGAGGCAGGGGCCGAGGGTGA

Coding sequence (CDS)

ATGGATCGAAACTCGAATTTTTTCAATATCGAACTGGATCGAGAGCTTCGAAGATTGGTTTCCGCTTCTCGATTCTGCTTCGTGTCCTTGAAGATGCTTCCCCTTTCTCTCCTAAAGACTGCCCAAGGGCATCCAATGTTGGTGGAGTTGAAAAATGGTGAGACTTACAATGGCCATCTGGTTAACTGCGATACGTGGATGAACATTCATCTTCGGGAAGTCATCTGTACATCTAAAGATGGTGACCGGTTTTGGCGAATGCCTGAATGTTATATCCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATCGATAAAGTTCAGGAAGAAACCAAAAGCCGTACAGATAGGAAACCTCCAGGTGTAGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCCGGTGGAAGACCATCTAAAGGAATGGGGCGAGGCTTTGATGACGGTGCTAAAGCTGCTTCTGGAGGCCGTGGAAAGGGTGGCTCCGGTGGAAAACCTGGTGCCAACAGAGTTGGAGGCAGGGGCCGAGGGTGA

Protein sequence

MDRNSNFFNIELDRELRRLVSASRFCFVSLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDDGAKAASGGRGKGGSGGKPGANRVGGRGRG

Homology

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BLAST of CmaCh09G011170 vs. Swiss-Prot
Match: LSM4_TOBAC (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.4e-58
Identity = 124/150 (82.67%), Postives = 128/150 (85.33%), Query Frame = 1


Query: 32  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 91
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 92  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGR-GREDGPGGRPSKGMGRGFD 151
           +RGNTIKYLRVPDEVIDKVQEE KSRTDRKPPGVGR R R GR+D   GR  KG+GRG D
Sbjct: 61  VRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRGMD 120

Query: 152 DGAKAASGGRGKGGSGGKPGANRVGGRGRG 181
           DG    + GRGKGG   K G  R GGRGRG
Sbjct: 121 DG---GAKGRGKGGPSAKSG-GRGGGRGRG 146

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BLAST of CmaCh09G011170 vs. Swiss-Prot
Match: LSM4_ORYSJ (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica GN=Os01g0256900 PE=2 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 8.9e-58
Identity = 125/151 (82.78%), Postives = 131/151 (86.75%), Query Frame = 1


Query: 32  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 91
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY 60

Query: 92  IRGNTIKYLRVPDEVIDKVQEET-KSRTDRKPPGVGRGRGRGR-EDGPGGRPSKGMGRGF 151
           IRGNTIKYLRVPDEVIDKVQEET KSR+DR+PPGVGRGRGRG     PGGR   G+GRG 
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRGDIGTKPGGR---GIGRGQ 120

Query: 152 DDGAKAASGGRGKGGSGGKPGANRVGGRGRG 181
           DDG     GGRG+GG GGK G  + GGRGRG
Sbjct: 121 DDGGSKGGGGRGRGGIGGK-GGIKGGGRGRG 147

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BLAST of CmaCh09G011170 vs. Swiss-Prot
Match: LSM4_FAGSY (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.3e-56
Identity = 122/150 (81.33%), Postives = 127/150 (84.67%), Query Frame = 1


Query: 32  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 91
           MLPLSLLKTAQGHPMLVELK+GETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP+CY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCY 60

Query: 92  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRG-FD 151
           IRGNTIKYLRVPDEVIDKVQEETKSR DRKPPGVGRGRGRGRE+G G R  +G GR    
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREEGSGARQVRGAGRDVMM 120

Query: 152 DGAKAASGGRGKGGSGGKPGANRVGGRGRG 181
             AKA    RG+G S GK G    GGRGRG
Sbjct: 121 QVAKAWVEVRGRGASAGKSGGR--GGRGRG 148

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BLAST of CmaCh09G011170 vs. Swiss-Prot
Match: LSM4_ARATH (Sm-like protein LSM4 OS=Arabidopsis thaliana GN=LSM4 PE=1 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.1e-54
Identity = 118/149 (79.19%), Postives = 122/149 (81.88%), Query Frame = 1


Query: 32  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 91
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 92  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 151
           IRGNTIKYLRVPDEVIDKVQEE K+RTDRKPPGVGRGRGRG +DG               
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG--------------- 120

Query: 152 GAKAASGGRGKGGSGGKPGANRVGGRGRG 181
           GA+    GRG+G S GK G NR  GRGRG
Sbjct: 121 GAR----GRGRGTSMGKMGGNRGAGRGRG 129

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BLAST of CmaCh09G011170 vs. Swiss-Prot
Match: LSM4_MOUSE (U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4 PE=1 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.9e-40
Identity = 92/142 (64.79%), Postives = 104/142 (73.24%), Query Frame = 1


Query: 32  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 91
           MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1   MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60

Query: 92  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 151
           IRG+TIKYLR+PDE+ID V+EE             +GRGRG   GP  +  K  GRG   
Sbjct: 61  IRGSTIKYLRIPDEIIDMVREE-----------AAKGRGRG---GPQQKQQK--GRGMGG 120

Query: 152 GAKAASGGRGKGGSGGKPGANR 174
             +   GGRG+GG    PGA R
Sbjct: 121 AGRGVFGGRGRGGI---PGAGR 123

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BLAST of CmaCh09G011170 vs. TrEMBL
Match: A0A0A0L3Q6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G486190 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 5.4e-78
Identity = 153/162 (94.44%), Postives = 156/162 (96.30%), Query Frame = 1


Query: 19  LVSASRFCFVSLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTS 78
           +VSAS  CF+SLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTS
Sbjct: 83  VVSASSVCFISLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTS 142

Query: 79  KDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPG 138
           KDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSR DRKP GVGRGRGRGREDGPG
Sbjct: 143 KDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG 202

Query: 139 GRPSKGMGRGFDDGAKAASGGRGKGGSGGKPGANRVGGRGRG 181
            RP+KGMGRGFDDGAKAASGGRGKGG GGKPGANRVGGRGRG
Sbjct: 203 VRPAKGMGRGFDDGAKAASGGRGKGGPGGKPGANRVGGRGRG 244

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BLAST of CmaCh09G011170 vs. TrEMBL
Match: A0A0A0K9I4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G302350 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 9.0e-73
Identity = 144/149 (96.64%), Postives = 145/149 (97.32%), Query Frame = 1


Query: 32  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 91
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 92  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 151
           IRGNTIKYLRVPDEVIDKVQEETKSR DRKP GVGRGRGRGREDGPG RP+KGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 120

Query: 152 GAKAASGGRGKGGSGGKPGANRVGGRGRG 181
           GAKAASGGRGKGG GGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

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BLAST of CmaCh09G011170 vs. TrEMBL
Match: A0A0R4J488_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G019100 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.7e-68
Identity = 135/149 (90.60%), Postives = 138/149 (92.62%), Query Frame = 1


Query: 32  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 91
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 92  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 151
           IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGR  KG+GRG D+
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRQPKGIGRGLDE 120

Query: 152 GAKAASGGRGKGGSGGKPGANRVGGRGRG 181
           G     GGRG+GG GGKPG NR GGRGRG
Sbjct: 121 GGPKGQGGRGRGGPGGKPGGNRGGGRGRG 149

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BLAST of CmaCh09G011170 vs. TrEMBL
Match: A0A0B2P7T6_GLYSO (Putative U6 snRNA-associated Sm-like protein LSm4 OS=Glycine soja GN=glysoja_010957 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.7e-68
Identity = 135/149 (90.60%), Postives = 138/149 (92.62%), Query Frame = 1


Query: 32  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 91
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 92  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 151
           IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGR  KG+GRG D+
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRQPKGIGRGLDE 120

Query: 152 GAKAASGGRGKGGSGGKPGANRVGGRGRG 181
           G     GGRG+GG GGKPG NR GGRGRG
Sbjct: 121 GGPKGQGGRGRGGPGGKPGGNRGGGRGRG 149

[Close]

BLAST of CmaCh09G011170 vs. TrEMBL
Match: A0A061DSH4_THECC (Small nuclear ribonucleoprotein family protein isoform 1 OS=Theobroma cacao GN=TCM_004631 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 5.1e-68
Identity = 135/149 (90.60%), Postives = 138/149 (92.62%), Query Frame = 1


Query: 32  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 91
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 92  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 151
           IRGNTIKYLRVPDEVIDKVQEETKSR DRKPPGVGRGRGR REDGPGGR  KG+GRG DD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRSREDGPGGRQPKGVGRGLDD 120

Query: 152 GAKAASGGRGKGGSGGKPGANRVGGRGRG 181
           GAK A GGRG+GG+GGK   NR GGRGRG
Sbjct: 121 GAKGAGGGRGRGGAGGKTSGNRGGGRGRG 149

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BLAST of CmaCh09G011170 vs. TAIR10
Match: AT5G27720.1 (AT5G27720.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 213.4 bits (542), Expect = 1.2e-55
Identity = 118/149 (79.19%), Postives = 122/149 (81.88%), Query Frame = 1


Query: 32  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 91
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 92  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 151
           IRGNTIKYLRVPDEVIDKVQEE K+RTDRKPPGVGRGRGRG +DG               
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG--------------- 120

Query: 152 GAKAASGGRGKGGSGGKPGANRVGGRGRG 181
           GA+    GRG+G S GK G NR  GRGRG
Sbjct: 121 GAR----GRGRGTSMGKMGGNRGAGRGRG 129

[Close]

BLAST of CmaCh09G011170 vs. TAIR10
Match: AT1G20580.1 (AT1G20580.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 65.9 bits (159), Expect = 3.0e-11
Identity = 45/134 (33.58%), Postives = 73/134 (54.48%), Query Frame = 1


Query: 33  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 92
           +P+ LL  A GH + VELK+GE Y G ++ C+   N  L ++  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDG-KVSQLEHVFI 66

Query: 93  RGNTIKYLRVPD-----EVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGR 152
           RG+ ++++ +PD      +  ++    K ++     GVGRGRG  R     G+P+ G GR
Sbjct: 67  RGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSL--GVGRGRGAMR-----GKPAAGPGR 124

Query: 153 GFDDGAKAASGGRG 162
           G        +GGRG
Sbjct: 127 G--------TGGRG 124

[Close]

BLAST of CmaCh09G011170 vs. TAIR10
Match: AT1G76300.1 (AT1G76300.1 snRNP core protein SMD3)

HSP 1 Score: 60.8 bits (146), Expect = 9.6e-10
Identity = 41/130 (31.54%), Postives = 69/130 (53.08%), Query Frame = 1


Query: 33  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 92
           +P+ LL  + GH + VE+K+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 66

Query: 93  RGNTIKYLRVPDEVID-KVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 152
           RG+ +++L +PD + +  + ++ + +      GVGRGRG           +KG GRG   
Sbjct: 67  RGSLVRFLVIPDMLKNAPMFKDVRGKGKSASLGVGRGRGAAMR-------AKGTGRG--- 121

Query: 153 GAKAASGGRG 162
                 GGRG
Sbjct: 127 ----TGGGRG 121

[Close]

BLAST of CmaCh09G011170 vs. NCBI nr
Match: gi|700199613|gb|KGN54771.1| (hypothetical protein Csa_4G486190 [Cucumis sativus])

HSP 1 Score: 298.5 bits (763), Expect = 7.8e-78
Identity = 153/162 (94.44%), Postives = 156/162 (96.30%), Query Frame = 1


Query: 19  LVSASRFCFVSLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTS 78
           +VSAS  CF+SLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTS
Sbjct: 83  VVSASSVCFISLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTS 142

Query: 79  KDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPG 138
           KDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSR DRKP GVGRGRGRGREDGPG
Sbjct: 143 KDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG 202

Query: 139 GRPSKGMGRGFDDGAKAASGGRGKGGSGGKPGANRVGGRGRG 181
            RP+KGMGRGFDDGAKAASGGRGKGG GGKPGANRVGGRGRG
Sbjct: 203 VRPAKGMGRGFDDGAKAASGGRGKGGPGGKPGANRVGGRGRG 244

[Close]

BLAST of CmaCh09G011170 vs. NCBI nr
Match: gi|659109077|ref|XP_008454536.1| (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo])

HSP 1 Score: 284.6 bits (727), Expect = 1.2e-73
Identity = 145/149 (97.32%), Postives = 146/149 (97.99%), Query Frame = 1


Query: 32  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 91
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 92  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 151
           IRGNTIKYLRVPDEVIDKVQEETKSR DRKP GVGRGRGRGREDGPGGRP+KGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 152 GAKAASGGRGKGGSGGKPGANRVGGRGRG 181
           GAKAASGGRGKGG GGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of CmaCh09G011170 vs. NCBI nr
Match: gi|778694870|ref|XP_011653886.1| (PREDICTED: sm-like protein LSM4 [Cucumis sativus])

HSP 1 Score: 281.2 bits (718), Expect = 1.3e-72
Identity = 144/149 (96.64%), Postives = 145/149 (97.32%), Query Frame = 1


Query: 32  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 91
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 92  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 151
           IRGNTIKYLRVPDEVIDKVQEETKSR DRKP GVGRGRGRGREDGPG RP+KGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 120

Query: 152 GAKAASGGRGKGGSGGKPGANRVGGRGRG 181
           GAKAASGGRGKGG GGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of CmaCh09G011170 vs. NCBI nr
Match: gi|659123987|ref|XP_008461936.1| (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo])

HSP 1 Score: 273.9 bits (699), Expect = 2.1e-70
Identity = 142/149 (95.30%), Postives = 143/149 (95.97%), Query Frame = 1


Query: 32  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 91
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE Y
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60

Query: 92  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 151
           IRGNTIKYLRVPDEVIDKVQEETKSR DRKP GVGRGRGRGREDGPGGR +KGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDD 120

Query: 152 GAKAASGGRGKGGSGGKPGANRVGGRGRG 181
           GAKAASGGRGKGG GGKPGA RVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGAIRVGGRGRG 149

[Close]

BLAST of CmaCh09G011170 vs. NCBI nr
Match: gi|571480722|ref|XP_006588395.1| (PREDICTED: uncharacterized protein LOC100500134 isoform X1 [Glycine max])

HSP 1 Score: 266.9 bits (681), Expect = 2.5e-68
Identity = 135/149 (90.60%), Postives = 138/149 (92.62%), Query Frame = 1


Query: 32  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 91
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 92  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD 151
           IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGR  KG+GRG D+
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRQPKGIGRGLDE 120

Query: 152 GAKAASGGRGKGGSGGKPGANRVGGRGRG 181
           G     GGRG+GG GGKPG NR GGRGRG
Sbjct: 121 GGPKGQGGRGRGGPGGKPGGNRGGGRGRG 149

The following BLAST results are available for this feature:

BLAST of CmaCh09G011170 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSM4_TOBAC	2.4e-58	82.67	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1	[more]
LSM4_ORYSJ	8.9e-58	82.78	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonic...	[more]
LSM4_FAGSY	1.3e-56	81.33	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=...	[more]
LSM4_ARATH	2.1e-54	79.19	Sm-like protein LSM4 OS=Arabidopsis thaliana GN=LSM4 PE=1 SV=1	[more]
LSM4_MOUSE	2.9e-40	64.79	U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4 PE=1 SV=1	[more]

BLAST of CmaCh09G011170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3Q6_CUCSA	5.4e-78	94.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G486190 PE=4 SV=1	[more]
A0A0A0K9I4_CUCSA	9.0e-73	96.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G302350 PE=4 SV=1	[more]
A0A0R4J488_SOYBN	1.7e-68	90.60	Uncharacterized protein OS=Glycine max GN=GLYMA_10G019100 PE=4 SV=1	[more]
A0A0B2P7T6_GLYSO	1.7e-68	90.60	Putative U6 snRNA-associated Sm-like protein LSm4 OS=Glycine soja GN=glysoja_010...	[more]
A0A061DSH4_THECC	5.1e-68	90.60	Small nuclear ribonucleoprotein family protein isoform 1 OS=Theobroma cacao GN=T...	[more]

BLAST of CmaCh09G011170 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27720.1	1.2e-55	79.19	Small nuclear ribonucleoprotein family protein	[more]
AT1G20580.1	3.0e-11	33.58	Small nuclear ribonucleoprotein family protein	[more]
AT1G76300.1	9.6e-10	31.54	snRNP core protein SMD3	[more]

BLAST of CmaCh09G011170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199613\|gb\|KGN54771.1\|	7.8e-78	94.44	hypothetical protein Csa_4G486190 [Cucumis sativus]	[more]
gi\|659109077\|ref\|XP_008454536.1\|	1.2e-73	97.32	PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo]	[more]
gi\|778694870\|ref\|XP_011653886.1\|	1.3e-72	96.64	PREDICTED: sm-like protein LSM4 [Cucumis sativus]	[more]
gi\|659123987\|ref\|XP_008461936.1\|	2.1e-70	95.30	PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo]	[more]
gi\|571480722\|ref\|XP_006588395.1\|	2.5e-68	90.60	PREDICTED: uncharacterized protein LOC100500134 isoform X1 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf
IPR027141	LSm4/Sm_D1/D3

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G011170.1	CmaCh09G011170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 37..101 score: 9.6
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 36..102 score: 1.4
IPR010920	LSM domain	unknown	SSF50182	Sm-like ribonucleoproteins	coord: 34..154 score: 3.78
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 23..179 score: 2.5E
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 32..104 score: 8.0
None	No IPR available	PANTHER	PTHR23338:SF24	SUBFAMILY NOT NAMED	coord: 23..179 score: 2.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh09G011170	Cucsa.079530	Cucumber (Gy14) v1	cgycmaB0133
CmaCh09G011170	Cla016400	Watermelon (97103) v1	cmawmB010
CmaCh09G011170	Csa7G302350	Cucumber (Chinese Long) v2	cmacuB043
CmaCh09G011170	MELO3C024092	Melon (DHL92) v3.5.1	cmameB017
CmaCh09G011170	ClCG09G010120	Watermelon (Charleston Gray)	cmawcgB008
CmaCh09G011170	CSPI07G12640	Wild cucumber (PI 183967)	cmacpiB045
CmaCh09G011170	CmoCh01G010140	Cucurbita moschata (Rifu)	cmacmoB048
CmaCh09G011170	CmoCh09G011260	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G011170	Cp4.1LG06g07520	Cucurbita pepo (Zucchini)	cmacpeB060
CmaCh09G011170	Cp4.1LG02g09130	Cucurbita pepo (Zucchini)	cmacpeB046
CmaCh09G011170	MELO3C024092.2	Melon (DHL92) v3.6.1	cmamedB017
CmaCh09G011170	CsaV3_7G024630	Cucumber (Chinese Long) v3	cmacucB0053
CmaCh09G011170	Cla97C09G172870	Watermelon (97103) v2	cmawmbB049
CmaCh09G011170	Bhi09G001281	Wax gourd	cmawgoB0031
CmaCh09G011170	CsGy7G011740	Cucumber (Gy14) v2	cgybcmaB887
CmaCh09G011170	Carg23306	Silver-seed gourd	carcmaB0382

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh09G011170	CmaCh01G009760	Cucurbita maxima (Rimu)	cmacmaB052

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G011170	Melon (DHL92) v3.5.1	cmameB019
CmaCh09G011170	Bottle gourd (USVL1VR-Ls)	cmalsiB019