MELO3C024092T1 (mRNA) Melon (DHL92) v3.5.1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.GATCATCTGGAAACTTGCATTCTCTTGGGTTTTTTTTTTTTCTACAGGTCTTCTAGTGTCTGCTTCGTATCTTTAAAGATGGTATGTTCCTGAACTTCTGTTTTTCATCTGTTCCTGTTTTCGTTTTGGTCCTTGATTAATTTTGCTCGTGTAACTTCAGAGTGTATTTATTCCTTTAATGTCTCCGATAAATTGAATTATTTCCTTCAAATGCGTGGTTCTCACCTGTTGTTTTTTCTTTTCCCTTCATGGGTGTGCTCTAATCGATATTTTTTATTGCAGCTTCCTCTTTCCCTCCTAAAGACTGCTCAAGGACACCCAATGGTAAGGGTTTTCTTTCAGTTGCCTTTCTGTTAATGGGTGAGCTTACATGCACTTAGAGTAAGTTCAAGAGAGAGTATCACATTTGATTGCTACTTTGAAGTTTCGATTGATTTGATATCCAGATAGGTGGGATAATACTTTTCAAATTGAGCCCCTGGAGCTTCTATTATGGTTATTATTATCATTATTATTTTAGATTTTTTTGCTTGGCTAAATCTTTAGTGCCACCACAGTGATACATAGTGGTTGTATATGGCTTTACTTTGTCTTGAGCTATTCTGGCTATTGTCAAGGACTTCTACTTTAGGATTTCGTTTATGTGCTTGTTCTAAAAATGTATAATTTCTGTGTTGCAACAGTTGGTGGAATTAAAAAACGGTGAGACATACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATTCATCTTCGGGAAGTCATCTGCACTTCTAAAGTAATGCACTTCTATTTTATGGATGATTTTTTTCTCTTTTGGATTTTTCTTCTTTCTCTAGGAGTTTGAACTTAAAATGACCATGTTTTCCAATTATCAAATGTCAGGACGGTGATCGGTTTTGGCGAATGCCCGAATTTTATATCCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTATTCATGAAAACTGTTGCCTTTTATACTGTTTTATTGTGTGATGTTTGATGCATAAGAGTACCTTACATATAATATGTGGTTGTTGAACAAAAAAGTCAGTTGCCTTAATTTAGTTCTTTTTCCACTTCTATCACATGCTTCTCGGCCGCATCTCATTTTTATTTCTTGGTTTCTAATATTATTTCCTCTCTTCTTTGACTTGTACTAAACTTTGTCATCATCTTTAACTTGCATGTGATCTTCTCGGCATCCACCAAAAAGTTATTTAATAAAACTGTTATTTTTCTTTCTGGTGATTTAAGTTATATCACTCCCTTTTTGTAATTTGCCCTAACTATAGTAACTTCCCTAGTTTTTGATCAGCTGTTTCAGTATTGTTAGCTCTTTCATACATGCATGGACCTGAGTGTACACTTACATGCAATCCTGAAATGTTCTATTTCACTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAAGTAGGACTTTAGAACGCATTACACCTTTTTGCATAACTACCTTGTTTGAATTTTCATAAATAAAATTTCTTAAACGTTACGCGTTTTTAATAAATTTTATGACTTAAACCACTTGTTCTATATTTAGTAATGACTTCGATTCAGTATAAGGAGTTGGGTCGTTACACTTATTTTGTATTGTTTTTCAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGGTATATTGTTTATGCATTTTATAATATATAACGATTGTCAAATGAAATAAAAAGGTAAAATGTATTTGAATTTGGGAAATTTGAAATTAAAAAACCAATTAGTTCTTGAAGTTCTCCCAAAAAAAAATTAATAGATTAACTCTTAAATCTTTTCTTTCTGGAAACTTGTACAATATCCATGTTGTAAATCTGAAAAAAGATGGACATTCGATAACATCTCATAAAATACGAAATACTTTTTTTGCTAATGTTTGCATGTATTGGACTCCTGATTGTCCAGAACAACTATGCTATTAGAGACCAAGATAAATTATGCTATTATAGACCAAGATTAATTTCTCCTTTGCCCTTGGTTTCTGAAAAGTAAGGAAACTGATGCTTTGACACCAAATTTTCAGATAGGAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGGGAGGATGGTCCAGGTGGCAGGTCAGCTAAAGGAATGGGGCGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGTGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCTGGTGCCATCAGAGGTAAACTAAACTGA GATCATCTGGAAACTTGCATTCTCTTGGGTTTTTTTTTTTTCTACAGGTCTTCTAGTGTCTGCTTCGTATCTTTAAAGATGCTTCCTCTTTCCCTCCTAAAGACTGCTCAAGGACACCCAATGTTGGTGGAATTAAAAAACGGTGAGACATACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATTCATCTTCGGGAAGTCATCTGCACTTCTAAAGACGGTGATCGGTTTTGGCGAATGCCCGAATTTTATATCCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGATAGGAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGGGAGGATGGTCCAGGTGGCAGGTCAGCTAAAGGAATGGGGCGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGTGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCTGGTGCCATCAGAGGTAAACTAAACTGA ATGCTTCCTCTTTCCCTCCTAAAGACTGCTCAAGGACACCCAATGTTGGTGGAATTAAAAAACGGTGAGACATACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATTCATCTTCGGGAAGTCATCTGCACTTCTAAAGACGGTGATCGGTTTTGGCGAATGCCCGAATTTTATATCCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGATAGGAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGGGAGGATGGTCCAGGTGGCAGGTCAGCTAAAGGAATGGGGCGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGTGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCTGGTGCCATCAGAGGTAAACTAAACTGA MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDDGAKAASGGRGKGGPGGKPGAIRGKLN*
BLAST of MELO3C024092T1 vs. Swiss-Prot
Match: LSM4_TOBAC (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 3.2e-61 Identity = 116/144 (80.56%), Postives = 118/144 (81.94%), Query Frame = 1
BLAST of MELO3C024092T1 vs. Swiss-Prot
Match: LSM4_ORYSJ (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica GN=Os01g0256900 PE=2 SV=1) HSP 1 Score: 234.2 bits (596), Expect = 9.2e-61 Identity = 119/145 (82.07%), Postives = 123/145 (84.83%), Query Frame = 1
BLAST of MELO3C024092T1 vs. Swiss-Prot
Match: LSM4_FAGSY (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=2 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 4.6e-60 Identity = 115/145 (79.31%), Postives = 119/145 (82.07%), Query Frame = 1
BLAST of MELO3C024092T1 vs. Swiss-Prot
Match: LSM4_ARATH (Sm-like protein LSM4 OS=Arabidopsis thaliana GN=LSM4 PE=1 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 3.4e-55 Identity = 107/132 (81.06%), Postives = 110/132 (83.33%), Query Frame = 1
BLAST of MELO3C024092T1 vs. Swiss-Prot
Match: LSM4_MOUSE (U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4 PE=1 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 2.1e-44 Identity = 91/145 (62.76%), Postives = 101/145 (69.66%), Query Frame = 1
BLAST of MELO3C024092T1 vs. TrEMBL
Match: A0A0A0L3Q6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G486190 PE=4 SV=1) HSP 1 Score: 289.3 bits (739), Expect = 2.7e-75 Identity = 138/142 (97.18%), Postives = 138/142 (97.18%), Query Frame = 1
BLAST of MELO3C024092T1 vs. TrEMBL
Match: A0A0A0K9I4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G302350 PE=4 SV=1) HSP 1 Score: 289.3 bits (739), Expect = 2.7e-75 Identity = 138/142 (97.18%), Postives = 138/142 (97.18%), Query Frame = 1
BLAST of MELO3C024092T1 vs. TrEMBL
Match: A0A0B2S9U8_GLYSO (Putative U6 snRNA-associated Sm-like protein LSm4 OS=Glycine soja GN=glysoja_002099 PE=4 SV=1) HSP 1 Score: 276.6 bits (706), Expect = 1.8e-71 Identity = 132/145 (91.03%), Postives = 135/145 (93.10%), Query Frame = 1
BLAST of MELO3C024092T1 vs. TrEMBL
Match: I1NB52_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 276.6 bits (706), Expect = 1.8e-71 Identity = 132/145 (91.03%), Postives = 135/145 (93.10%), Query Frame = 1
BLAST of MELO3C024092T1 vs. TrEMBL
Match: A0A0B2P7T6_GLYSO (Putative U6 snRNA-associated Sm-like protein LSm4 OS=Glycine soja GN=glysoja_010957 PE=4 SV=1) HSP 1 Score: 272.3 bits (695), Expect = 3.4e-70 Identity = 127/143 (88.81%), Postives = 130/143 (90.91%), Query Frame = 1
BLAST of MELO3C024092T1 vs. TAIR10
Match: AT5G27720.1 (AT5G27720.1 Small nuclear ribonucleoprotein family protein) HSP 1 Score: 215.7 bits (548), Expect = 1.9e-56 Identity = 107/132 (81.06%), Postives = 110/132 (83.33%), Query Frame = 1
BLAST of MELO3C024092T1 vs. TAIR10
Match: AT1G20580.1 (AT1G20580.1 Small nuclear ribonucleoprotein family protein) HSP 1 Score: 76.3 bits (186), Expect = 1.8e-14 Identity = 47/138 (34.06%), Postives = 72/138 (52.17%), Query Frame = 1
BLAST of MELO3C024092T1 vs. TAIR10
Match: AT1G76300.1 (AT1G76300.1 snRNP core protein SMD3) HSP 1 Score: 74.7 bits (182), Expect = 5.3e-14 Identity = 44/134 (32.84%), Postives = 70/134 (52.24%), Query Frame = 1
BLAST of MELO3C024092T1 vs. NCBI nr
Match: gi|659123987|ref|XP_008461936.1| (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo]) HSP 1 Score: 300.4 bits (768), Expect = 1.7e-78 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1
BLAST of MELO3C024092T1 vs. NCBI nr
Match: gi|659109077|ref|XP_008454536.1| (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo]) HSP 1 Score: 292.7 bits (748), Expect = 3.5e-76 Identity = 139/142 (97.89%), Postives = 139/142 (97.89%), Query Frame = 1
BLAST of MELO3C024092T1 vs. NCBI nr
Match: gi|700199613|gb|KGN54771.1| (hypothetical protein Csa_4G486190 [Cucumis sativus]) HSP 1 Score: 289.3 bits (739), Expect = 3.9e-75 Identity = 138/142 (97.18%), Postives = 138/142 (97.18%), Query Frame = 1
BLAST of MELO3C024092T1 vs. NCBI nr
Match: gi|778694870|ref|XP_011653886.1| (PREDICTED: sm-like protein LSM4 [Cucumis sativus]) HSP 1 Score: 289.3 bits (739), Expect = 3.9e-75 Identity = 138/142 (97.18%), Postives = 138/142 (97.18%), Query Frame = 1
BLAST of MELO3C024092T1 vs. NCBI nr
Match: gi|657955072|ref|XP_008368996.1| (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Malus domestica]) HSP 1 Score: 278.1 bits (710), Expect = 8.9e-72 Identity = 130/143 (90.91%), Postives = 134/143 (93.71%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
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