MELO3C023673 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023673
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative ribonuclease P/MRP subunit POP5-like protein
Location	chr1 : 7003692 .. 7010333 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATATAACTGTTGACCCAAATGATTTATCCACCACATTGTAGATCTTAAGTTCCACATCCTCTTCTGACCTTCGTTTGTTTCCGACGACCTCTGCTGACTATCTCTTTGCATCAACAACAAGGTAAATACCCTCCAACTTCTATGCTCTTAATTTCCTCGGTTTTGTCTCTTAATTTAGGGGTAGGCTTTTTGTCTATAGAAAAGTAGTTGGTGTGAGAGAACTAACTGTCTGCAATAGGCTGGAGTTGGAAAGTCTTAGGGCTCCTTCTTGTTATTAAATATTACTAGTAGTAAGGCGATATCTTACAGAGTCCTTTGGGCGTGACTAGATGAACCTTGTACCTACAGCTATTAATTAACTGGGGATATAGATTCTGGCTTCTGTAACAGCCTTCTTGATTCTTGGAGGATTTTCTTTAACTCGTTGTCTAATGACAATTGGATAGTACTCTTGAACCACAATTATGGATGCACCGGTTTCGTTGGATTGGAGTTGAGTCGAAGTACAAGAATTTGGTCGACCATCTTTGTTTAGACAATTACTCTGTTAGGAGAAACAGTTCAAGTTTGTATGTTCTGTGCCTATTGATGAATTTTCTCCCTAACATTGGAGTCTCCCAGGATGCCGAATTTCAGTTAGTTCCATAGTCATAAATAACTTCTGTTTAAATTTCTTTCTGGGTTTAGTTTAATTTTTATCTTTAGTTTATTACTGTTACTTTTTTTAAGAAACGGTGTCATTCTTTCATTGAATAATAGTGTCAGCAGGGTATTTGACATTAAACTACACAAACAAATTTCAAATGTTGGAGAGCTATTATAGACTCTTTTATATTACAGAATTTGATAAACACAGTTTACAGCCTATAAAAAATTTTATGGTTCAACGACTTCAAACTTATAACTTAACCTAATGTGCATTGTCAATCCATTGACAAAGGCATTGAAGCTTGTTATGCTGGTACTGTGTGTATATAGACTTTACTTCAAGAGTAAGGGTTCAAAGTGATTATAGATTTTAAAATTTAACTACGAAAGGGTTCTTCAAATCCATAATCAATAGAATACCAGAGGAATGTATAAGGATGACTATTAAATAATCCCTCTTTCATCCAGTTTAACAACTATATTTGACTAGAAGAGGACACATTTTGATATTTGGAAACATTTTAAAATTTCCATATCTTGCTTTTCATTGTTGTTTTTCTCCTTGGAAATCTGTCTTACAAAGTGTATGTTAGATTTTGAATCATCATGTTTCGTACAATGAATTTTAAATCCTAGAATTATAATTGTATGTTGTATGATGACTTGCACAGACACATGTACATCTCTAAGCTTTAGCAGAACTTCTGATGCAAGGGGGGCTAAGGAATCTCATATTGACCATTTTTTATATGTGGAAAATTGATTACTCCTACTGACCAATTTTTTTTTAAGTTGCCTTTGCTAAAGAATCTAGTATATATTCTGTGGACTGTGCATTACATTTTTATTTGTCATTGTGTTCCTTATGGTTGCATGTTTTGACGCAGGCATACGTGTTTGAACTTAACTTGAATACTGGACTGTTTAGAATGACTTCTTAATCACTTTGAAAATCATTCTAAACATTGACTACTTGTTTCTTTAGGAGCTTATGTTTTGGAAATTGGCAAGTCTTATATGTTGGCTAACAGATAGATAGCCTATACTTTTACAAGGATTCGCTTCGAGGCTGTTTATGGGAGTGCTTTACCCACAGTCACAATCACTTCCCAGATCCCACCCAAACGAGTCGTATTTGGAAGTAACTTGATTGTGGAACTTGGAAAAAGCATGTTAGGGGTGCTTTTGGCCCAAACACTTACCCAATAAATACCTATATACATTTTCTTTTTAAAAAAACTGAATACTTTTTATTTAACTGCTTATGTCAGCACTCCTAAATGCATCTTTACTATTTCTCCTTGGTCTGAATCTCATTCTTTATCCTGCATGTTGTCATCCTTTCTTACTATTGCCACGACATTAGTTTTGAAGTTTCAACTTTTGCCTATTGTTTAATCAAATAGCCCTTGGAACCCTTCAATAAGTCTACTTAAGGAGAATAGAAAGAGCCAGCTAGTTATGAACTTTTGATTCTTGCCTAAGTAGTTGCTCATCCTTTTACGTATTGTTTAATCAACAGTTCTGGGGATCCTTTAACGAGTCTAATTCAATTCTATTTTGCTGCTAAGTTATCCTAAGTTCTAGCTGTTTGTGCCGCCATAGATGAGTGGAGAATGCTTGCAAACGACCCCCATCACAAGCAGAAAATATTCTTAGATTTACTGCTTTGACAAGGTTGATTTTTTCATGAATGACTTTCTACACTTTCCTAAGACAATGTCCTACCATTTTCGAAAATGATTTGAAAGCACATATAGCATTTGTGATTTTCAAGTTCTGCACTCTGGTGGAGTAGGCCCTAACACTATAATGCAAAGAAAAGATGTGCTGTTGAATCCCCTGACTTTTATCCACCTCACTTTGCCTTTGATGGTCAATCCTTTTGGGAGTAATGGAAAATATCAATCCACCTTTGATTTGCTCCACATATTTGCAATGTGGAAGTCAATTGCGAGTATTTCATACTATTCAGTACTCGACTCGGTGTTCAAATTGCAATCGAGCAAATCACCATCAATTGTCATTTCAATCCTTGTTTAAATTCATAGCATATCGACATTGATGATTGGTTATACATCAATGAATGAATGATGCACCAAGTCACATGGAAAATTTTTTTTATCCTTCTAAGTTATAATTTCTTTGTAGGAGCGCTTGCAACTCAGCCTTCATTTCTTTATGACCCCTACATGAAATTATTGTACTATTGCCAATTTAGCTGCTGCAGGGTTACCACTGTCAATGTAAGTTTGATTGCATGCTCCACTTAATAGTCTCTGGGTCTAGTTTAATATGTCTTAAGAATGTAACTTTTTTACATGTATCAAGCTACGAAGTTAAAATAGAACAGGCATCTCCTGTAGAACCTAGGAAACACATTTAAATTTATAGATTAGAGATTCAATATTTGAACATTATTATTTCCTCATTCATTATACTGCAACTTGGATCAAGTTTCACTCTGAAACCTCTTTCCATTTTCAATTTTGTTGATTGATTAAAGCTTATTACATACAGATGATGGTCAAAAGGGTCTGTAGACTGTAAGAAGCTAAAAAACTATCTTTACTATATCTTCTGCATAGGTTGAACATATTTTTCCCATGATAAATCTATGAGCATATTGAAAGAATTGAATATAAAGGTGGTTAGGAATTAGGTGCTTGTGAAATTAGTTGAATCTTCTTTCCCTAAAGTCGAGTCTTCTTTTTGTTAGATTTTGACCTAGGAGTTCTGAAAACCGCATTCTTTTTAAGGATATGTTGAATTTCAGCTATTTTGTAGGTATTATGGATTTAGCAGGATAGAAATATTTGGGAGTTGTGAATAATGCTTAGGCCAAAGTCTTGGTTTCTTACCAAAAAAGCAAAAGAATGGCTTAAGCTGAAGAGGGCAGTTAGCTTTTTTGTTTCTATCTTTTCCTGGTACGAGGAATGACAAGAATGTTCTGCTTCTGTTGAAAGCTTATGTTGGAGATCTTGTATTGTTGATTTTCTTTCCGTTGCTTAACCTATTTATTAATATTTGTGATATGAAAACGCAACTAATTGGAATTAAAAACCCAACTATTTATTAATTTTTAAAGAATTGAAAATTTACCTGAAATTAGGTGCTTGTGAGATCCAAGTGGAAAGATGCAGCCACAAATATAAAGGTAGTTAGGAATGAGGCATCCAACTATGATCAAAACCCCATAGTTAGCATTCATTCTAAGGTCTATGGATATCAACCAAGAATGATGTTTAGCAAGAAAACTTAGAAAGAATAACAAACAAACCAGTTCACAAAATCTTTTAAAGCCACTGGTATAAAACCAGAAACTTTCTTCTACCAGTGGCATTGTGAACACGAGATTGTATAAACAAACAAATATGTTTTGGCTTACTGTTTTAGTTTGTTATTCAAATAGCTAAAACCTACTGCTTTACTAGTTTACTGTAATTCAAATAGCTTAAACCTACTGCTTTACTAGTTTACTGTTTTGGCTTATTGTTTTAGTTTGTTAGAACTACTTAGTTAGTTACTAAATAACTAACTTTTATTAAGTTTTCCTCAATAAATAAAGATCTCCTCTCACATCGAGAGATAAGATTTTTATTCCTTTTAAATGTTCATGAAAGAATTTGATTGATTTGATAGGGCTGTCCGGATATGCCATATTTTAATTTGGGAATTGTTTCTTGTGGTTGGTGGGGCGTGTGCTAATGTGGCATTGTTGGAGAGAAGGATAACTGAGTGTTGCAGGGTTGAGCAAGGAACCTAGTGATGTATGTGTCCTTATTAGGTTTTGTGTTTTCTTTAGGCTTCAACTTTGATTGTTTTTTTTTCTTTTTTTTAATTATTATATATGTACCATCTTTCTTGATTGGGACTCCTTTTCTTTAGCGGGGTTCCCTTTTTGGAGGTTGGATTTCCGTACTCTTGTATTCTTTCATTTTTCCTCAATGAAAGTGATTGCTTATTTTAGTTATCTTTGACTCACTGCTTTTATTGTGGAAGATTAGTTTTTGAGATTAGATATGTTGCTTTTCCTTTTAGGCATAAGTCGTTACTGAAGTTAGAAGGTACAAAACAATGGTGAGGTTTAAAAACCGATACATGGTGTTTGAAGTTCTCTTGGATCCCAATAAAAACCTTAAAACAGATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGCAATCAAGGATAGTATTCTTCTCAACTTCGGGGAATGTGGTTTTGCTTCCGCACTTGGATCTTTTCAAGGTAGATAAAGCTGCATCTTTGCTAATACTTTCTTCAACTTCCATTTGTGATGACATCATACACAGATATATTTATATGGCTTGCCTTCTTGGTGTTTGTTTAGTTAAGTATGTAAATCCAATCACGAAGTTATGTATTATTAGAGCCTCCAGAGAGGACTACCAGAATGTGTGGGCTGCAATTACTATGGTGAGGAGTATCAGCAATTGTCCCGTTGTATTCAATCTACTGGACCTAAGTGGTAAGTTTGTATTCGATCTAAAGGCTTCTAGAGAAATTGGGTTTAAATTATTGTCTGATCACCTATCTAAGAATTAAGAATTGATATCTTATGAGTTACCATCCCTTATCAATGGCAGCAGCAATCTTTTGGATTAGAAAAGAGAGAATCTAGTAACCATCATGTATGGACATGAGATCAATAACACTAATGTGCAGTAAAAAGTTTAAGAGGAAATGGGTTAAGAAGAAATGGGTTTAAATCATGATGACCAGATCTGAGAATTATTATCAACAACCAAATGTACCTGTCGGTCTAATGGTTGGCTAATACATGTCCCAAGTTACTCAAGAACTCACTAATATACATATATATATTTGGGAAAACATTTAACTAAAAATTCTGGGTGTGTATCTGCACGGCATTCTTTTACATAGTGACGAAAGTTGCAAATGGAAAAAGGCATAGTGACGAAAGTTGCAAATGGTAAAAGGTAATGGAAATTGTAAAAGTAAATTGTCTTCTGCTATACTATTTTCAATTTTGATCACTATGGAATTCTAATAACCAATGAAAGGCGTTGTTTTCAATTTAAAAAAATTTAATAATAACCAGCTTTTTTGGTTTTGTATACATTATGATAGGACCCTAATGTCCTATTGGATATCTTCGTATTATGAAATTGTCCGTCTCATATATAAAAAAGGACGACCAACTGTTCATATTTTACTTTTTCCCCTCTTTAAGGGAGGGTTTTGATAATATGATTTCTTACTCGTATAAGGCGCCAATGCTTTTATCTTTTACAGGAAATACAAGGGCCTGCAAGAACACCGCCTTGAGGCTCGATGGATTGAAGTTTGAACAATACAAACTTATGGTTGGACATTGTCTTCCAGATAATGTAAAGATTCATATGCAGAACTGTCTCGAGAAGATTGCAAATTTAGAAAACTGATTGTATTGTTGCCATTTATATGAAATCCACCATTTCAAGATAATTTTAATTAGATAATTCACTTGAATCCCACACATTGTTGTTCCGGTTGCACTCCCTGCCCCTTCGCATTTTTATTTCATTTGATCTTTTTGCAGTTTTTGATTGTTAGTTGTACGAGAGAAGTAGTTCAATGAGACAGTTACATGATTGGTGGGCTTGATGAA

mRNA sequence

GAAATATAACTGTTGACCCAAATGATTTATCCACCACATTGTAGATCTTAAGTTCCACATCCTCTTCTGACCTTCGTTTGTTTCCGACGACCTCTGCTGACTATCTCTTTGCATCAACAACAAGGCATAAGTCGTTACTGAAGTTAGAAGGTACAAAACAATGGTGAGGTTTAAAAACCGATACATGGTGTTTGAAGTTCTCTTGGATCCCAATAAAAACCTTAAAACAGATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGCAATCAAGGATAGTATTCTTCTCAACTTCGGGGAATGTGGTTTTGCTTCCGCACTTGGATCTTTTCAAGTTAAGTATGTAAATCCAATCACGAAGTTATGTATTATTAGAGCCTCCAGAGAGGACTACCAGAATGTGTGGGCTGCAATTACTATGGTGAGGAGTATCAGCAATTGTCCCGTTGTATTCAATCTACTGGACCTAAGTGGAAATACAAGGGCCTGCAAGAACACCGCCTTGAGGCTCGATGGATTGAAGTTTGAACAATACAAACTTATGGTTGGACATTGTCTTCCAGATAATGTAAAGATTCATATGCAGAACTGTCTCGAGAAGATTGCAAATTTAGAAAACTGATTGTATTGTTGCCATTTATATGAAATCCACCATTTCAAGATAATTTTAATTAGATAATTCACTTGAATCCCACACATTGTTGTTCCGGTTGCACTCCCTGCCCCTTCGCATTTTTATTTCATTTGATCTTTTTGCAGTTTTTGATTGTTAGTTGTACGAGAGAAGTAGTTCAATGAGACAGTTACATGATTGGTGGGCTTGATGAA

Coding sequence (CDS)

ATGGTGAGGTTTAAAAACCGATACATGGTGTTTGAAGTTCTCTTGGATCCCAATAAAAACCTTAAAACAGATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGCAATCAAGGATAGTATTCTTCTCAACTTCGGGGAATGTGGTTTTGCTTCCGCACTTGGATCTTTTCAAGTTAAGTATGTAAATCCAATCACGAAGTTATGTATTATTAGAGCCTCCAGAGAGGACTACCAGAATGTGTGGGCTGCAATTACTATGGTGAGGAGTATCAGCAATTGTCCCGTTGTATTCAATCTACTGGACCTAAGTGGAAATACAAGGGCCTGCAAGAACACCGCCTTGAGGCTCGATGGATTGAAGTTTGAACAATACAAACTTATGGTTGGACATTGTCTTCCAGATAATGTAAAGATTCATATGCAGAACTGTCTCGAGAAGATTGCAAATTTAGAAAACTGA

Homology

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BLAST of MELO3C023673 vs. Swiss-Prot
Match: POP5_ARATH (Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1687 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.0e-46
Identity = 96/155 (61.94%), Postives = 116/155 (74.84%), Query Frame = 1


Query: 1   MVRFKNRYMVFEVLLDPNKNLKTDD-PIIITQYNVSKAIKDSILLNFGECGFASALGSFQ 60
           MV FKNRYM+ EV LDP+K+L  +  PII+TQ+N+SKAIKDSIL+NFGECG  S+LGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  VKYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLD 120
           VKYVNPITKLCI+R+SRE+++ VW AIT+V+SI NCPV+ NLLD+SG  RAC++TAL+ D
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query: 121 GLKFEQYKLMVGHCLPDNVKIHMQNCLEKIANLEN 155
             KFEQ        L +     M   LEKI  LEN
Sbjct: 121 KEKFEQ----CSKSLSEEEIRQMNTSLEKIKLLEN 151

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BLAST of MELO3C023673 vs. Swiss-Prot
Match: POP5_SCHPO (Ribonuclease P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC830.09c PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.2e-14
Identity = 45/134 (33.58%), Postives = 69/134 (51.49%), Query Frame = 1


Query: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPII-----ITQYNVSKAIKDSILLNFGECGFASAL 60
           MVRFK+RY++FEVL    K    D P I     IT  ++SK I+  +  NFG+ G     
Sbjct: 1   MVRFKSRYLLFEVLYPEAKEF-FDYPTIPSDSSITTSSLSKIIRTMVAENFGDVGIGKVA 60

Query: 61  GSFQVKYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTA 120
            S  VKY +P T   I+R SR+ ++  WAA+ ++R +   PV+  ++ +SG  +  +  A
Sbjct: 61  SSLTVKYFSPNTSTGILRVSRQHFRLAWAALVLIRELYGKPVIIRVVRVSGTIKKAELAA 120

Query: 121 LRLDGLKFEQYKLM 130
           +  +  +     LM
Sbjct: 121 IERNKSEIHNISLM 133

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BLAST of MELO3C023673 vs. Swiss-Prot
Match: POP5_DICDI (Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium discoideum GN=pop5 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.7e-12
Identity = 38/126 (30.16%), Postives = 69/126 (54.76%), Query Frame = 1


Query: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60
           MVR KNRY++ EV+   N+         + Q+ +S  +K+ +    GE  + +   + ++
Sbjct: 1   MVRLKNRYLMTEVIWHDNEKSTQLSDSWLFQF-ISNEVKEKL----GELTYEAFKKTLKI 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120
            YVNP T + IIR S E Y+++W A+T++ S    P+ F ++ + G+ R C+  A+++ G
Sbjct: 61  IYVNPDTNIFIIRVSFEYYKSLWTALTLITSYYGVPIYFRMVHVGGSIRLCQKAAIKIFG 120

Query: 121 LKFEQY 127
            +   Y
Sbjct: 121 KQISVY 121

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BLAST of MELO3C023673 vs. TrEMBL
Match: A0A0A0K7W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290500 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 8.0e-70
Identity = 133/137 (97.08%), Postives = 136/137 (99.27%), Query Frame = 1


Query: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60
           MVRFKNRYMVFEVLLDPNK+LKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120
           KYVNPITK+CIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRL+G
Sbjct: 61  KYVNPITKVCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLEG 120

Query: 121 LKFEQYKLMVGHCLPDN 138
           LKFEQYKLMVGH LPDN
Sbjct: 121 LKFEQYKLMVGHYLPDN 137

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BLAST of MELO3C023673 vs. TrEMBL
Match: A0A061ESH1_THECC (Ribonuclease P family protein / Rpp14 family protein isoform 1 OS=Theobroma cacao GN=TCM_020284 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.3e-59
Identity = 115/154 (74.68%), Postives = 132/154 (85.71%), Query Frame = 1


Query: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60
           MV FKNRYMV EV LDPNK    DDPI++TQ+N+SKAIKDSIL+NFGECG AS+LGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNKENLGDDPIVVTQFNISKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120
           KYVNPITKLC+IRASREDYQ +W+AI++VRSI +CPV+FNLLDLSG+ RACKN AL+ D 
Sbjct: 61  KYVNPITKLCVIRASREDYQKIWSAISLVRSIGSCPVLFNLLDLSGSIRACKNAALKCDE 120

Query: 121 LKFEQYKLMVGHCLPDNVKIHMQNCLEKIANLEN 155
           LKFEQYKLMVG  L  +V  HMQNCLEKI  LE+
Sbjct: 121 LKFEQYKLMVGARLSADVTQHMQNCLEKIKILEH 154

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BLAST of MELO3C023673 vs. TrEMBL
Match: A0A0D2LQS8_GOSRA (Ribonuclease P/MRP protein subunit POP5 OS=Gossypium raimondii GN=B456_001G000500 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.3e-59
Identity = 111/154 (72.08%), Postives = 131/154 (85.06%), Query Frame = 1


Query: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60
           MV FKN YMV EVLLDPNK +  DDPI++TQ+N+SKAIKD IL+NFGECG AS+LGSFQV
Sbjct: 1   MVGFKNSYMVMEVLLDPNKEISGDDPIVVTQFNISKAIKDGILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120
           KYVNPITKLC++RASR++YQ +W++I+MVRSI NCPV+FNLLDLSGN +ACK   L+ D 
Sbjct: 61  KYVNPITKLCVMRASRDEYQKIWSSISMVRSIGNCPVLFNLLDLSGNIKACKTATLKCDE 120

Query: 121 LKFEQYKLMVGHCLPDNVKIHMQNCLEKIANLEN 155
           LKFEQYKLMVG CL  +V  HMQNCLEKI  LE+
Sbjct: 121 LKFEQYKLMVGACLSADVTQHMQNCLEKIRILEH 154

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BLAST of MELO3C023673 vs. TrEMBL
Match: A0A0D2PQX2_GOSRA (Ribonuclease P/MRP protein subunit POP5 OS=Gossypium raimondii GN=B456_001G000500 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.9e-59
Identity = 110/154 (71.43%), Postives = 131/154 (85.06%), Query Frame = 1


Query: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60
           MV FKN YMV EVLLDPNK +  DDPI++TQ+N+SKAIKD IL+NFGECG AS+LGSFQV
Sbjct: 1   MVGFKNSYMVMEVLLDPNKEISGDDPIVVTQFNISKAIKDGILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120
           KYVNPITKLC++RASR++YQ +W++I+MVRSI NCPV+FNLLDLSG+ +ACK   L+ D 
Sbjct: 61  KYVNPITKLCVMRASRDEYQKIWSSISMVRSIGNCPVLFNLLDLSGSIKACKTATLKCDE 120

Query: 121 LKFEQYKLMVGHCLPDNVKIHMQNCLEKIANLEN 155
           LKFEQYKLMVG CL  +V  HMQNCLEKI  LE+
Sbjct: 121 LKFEQYKLMVGACLSADVTQHMQNCLEKIRILEH 154

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BLAST of MELO3C023673 vs. TrEMBL
Match: A0A0D2QNZ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G114700 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 8.3e-59
Identity = 112/154 (72.73%), Postives = 130/154 (84.42%), Query Frame = 1


Query: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60
           MV FKNRYMV EVLLDPNK +  DDPI++TQ+N+SKAIKDSIL+NFGECG AS+LGSFQV
Sbjct: 1   MVGFKNRYMVMEVLLDPNKEISGDDPIVVTQFNISKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120
           KYVNPITKLC+IR SR++YQ +W +I+MVR I NCPV+FNLLDLSGN +ACK  AL+ D 
Sbjct: 61  KYVNPITKLCVIRVSRDEYQKIWTSISMVRRIGNCPVLFNLLDLSGNIKACKTAALKCDE 120

Query: 121 LKFEQYKLMVGHCLPDNVKIHMQNCLEKIANLEN 155
           LKFEQYKLMVG  L  +V  HMQNCLEKI  LE+
Sbjct: 121 LKFEQYKLMVGARLLADVTQHMQNCLEKIRILEH 154

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BLAST of MELO3C023673 vs. TAIR10
Match: AT1G04635.1 (AT1G04635.1 ribonuclease P family protein / Rpp14 family protein)

HSP 1 Score: 186.0 bits (471), Expect = 1.7e-47
Identity = 96/155 (61.94%), Postives = 116/155 (74.84%), Query Frame = 1


Query: 1   MVRFKNRYMVFEVLLDPNKNLKTDD-PIIITQYNVSKAIKDSILLNFGECGFASALGSFQ 60
           MV FKNRYM+ EV LDP+K+L  +  PII+TQ+N+SKAIKDSIL+NFGECG  S+LGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  VKYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLD 120
           VKYVNPITKLCI+R+SRE+++ VW AIT+V+SI NCPV+ NLLD+SG  RAC++TAL+ D
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query: 121 GLKFEQYKLMVGHCLPDNVKIHMQNCLEKIANLEN 155
             KFEQ        L +     M   LEKI  LEN
Sbjct: 121 KEKFEQ----CSKSLSEEEIRQMNTSLEKIKLLEN 151

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BLAST of MELO3C023673 vs. NCBI nr
Match: gi|659123073|ref|XP_008461474.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis melo])

HSP 1 Score: 314.3 bits (804), Expect = 1.2e-82
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1


Query: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60
           MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120
           KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120

Query: 121 LKFEQYKLMVGHCLPDNVKIHMQNCLEKIANLEN 155
           LKFEQYKLMVGHCLPDNVKIHMQNCLEKIANLEN
Sbjct: 121 LKFEQYKLMVGHCLPDNVKIHMQNCLEKIANLEN 154

[Close]

BLAST of MELO3C023673 vs. NCBI nr
Match: gi|449443879|ref|XP_004139703.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus])

HSP 1 Score: 297.4 bits (760), Expect = 1.5e-77
Identity = 146/154 (94.81%), Postives = 150/154 (97.40%), Query Frame = 1


Query: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60
           MVRFKNRYMVFEVLLDPNK+LKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120
           KYVNPITK+CIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRL+G
Sbjct: 61  KYVNPITKVCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLEG 120

Query: 121 LKFEQYKLMVGHCLPDNVKIHMQNCLEKIANLEN 155
           LKFEQYKLMVGH LPDNV + MQNCLEKIA LEN
Sbjct: 121 LKFEQYKLMVGHYLPDNVNLQMQNCLEKIATLEN 154

[Close]

BLAST of MELO3C023673 vs. NCBI nr
Match: gi|700189194|gb|KGN44427.1| (hypothetical protein Csa_7G290500 [Cucumis sativus])

HSP 1 Score: 271.2 bits (692), Expect = 1.1e-69
Identity = 133/137 (97.08%), Postives = 136/137 (99.27%), Query Frame = 1


Query: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60
           MVRFKNRYMVFEVLLDPNK+LKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120
           KYVNPITK+CIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRL+G
Sbjct: 61  KYVNPITKVCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLEG 120

Query: 121 LKFEQYKLMVGHCLPDN 138
           LKFEQYKLMVGH LPDN
Sbjct: 121 LKFEQYKLMVGHYLPDN 137

[Close]

BLAST of MELO3C023673 vs. NCBI nr
Match: gi|1000979288|ref|XP_002513218.2| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Ricinus communis])

HSP 1 Score: 238.0 bits (606), Expect = 1.1e-59
Identity = 115/154 (74.68%), Postives = 133/154 (86.36%), Query Frame = 1


Query: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60
           MV FKNRYMV E+ LDPN++L TDDPIIITQ+NVSKAIK+SIL+N+GECG AS+LGSFQV
Sbjct: 1   MVGFKNRYMVMEIFLDPNRDLNTDDPIIITQFNVSKAIKESILVNYGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120
           KYVNPITKLCIIRASRE+YQ VW+A+TMVRSI NCPV+FNLLDLSG+ RACK  AL+ D 
Sbjct: 61  KYVNPITKLCIIRASREEYQKVWSAVTMVRSIGNCPVLFNLLDLSGSIRACKRAALKCDE 120

Query: 121 LKFEQYKLMVGHCLPDNVKIHMQNCLEKIANLEN 155
            KFEQ+KL VG  L  +V +HMQNCLEKI  LE+
Sbjct: 121 AKFEQHKLAVGDHLSADVTLHMQNCLEKIKILEH 154

[Close]

BLAST of MELO3C023673 vs. NCBI nr
Match: gi|763738853|gb|KJB06352.1| (hypothetical protein B456_001G000500 [Gossypium raimondii])

HSP 1 Score: 237.3 bits (604), Expect = 1.8e-59
Identity = 111/154 (72.08%), Postives = 131/154 (85.06%), Query Frame = 1


Query: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60
           MV FKN YMV EVLLDPNK +  DDPI++TQ+N+SKAIKD IL+NFGECG AS+LGSFQV
Sbjct: 1   MVGFKNSYMVMEVLLDPNKEISGDDPIVVTQFNISKAIKDGILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120
           KYVNPITKLC++RASR++YQ +W++I+MVRSI NCPV+FNLLDLSGN +ACK   L+ D 
Sbjct: 61  KYVNPITKLCVMRASRDEYQKIWSSISMVRSIGNCPVLFNLLDLSGNIKACKTATLKCDE 120

Query: 121 LKFEQYKLMVGHCLPDNVKIHMQNCLEKIANLEN 155
           LKFEQYKLMVG CL  +V  HMQNCLEKI  LE+
Sbjct: 121 LKFEQYKLMVGACLSADVTQHMQNCLEKIRILEH 154

The following BLAST results are available for this feature:

BLAST of MELO3C023673 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POP5_ARATH	3.0e-46	61.94	Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1...	[more]
POP5_SCHPO	5.2e-14	33.58	Ribonuclease P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe (strain 972...	[more]
POP5_DICDI	3.7e-12	30.16	Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium discoideum GN=...	[more]

BLAST of MELO3C023673 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7W3_CUCSA	8.0e-70	97.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290500 PE=4 SV=1	[more]
A0A061ESH1_THECC	1.3e-59	74.68	Ribonuclease P family protein / Rpp14 family protein isoform 1 OS=Theobroma caca...	[more]
A0A0D2LQS8_GOSRA	1.3e-59	72.08	Ribonuclease P/MRP protein subunit POP5 OS=Gossypium raimondii GN=B456_001G00050...	[more]
A0A0D2PQX2_GOSRA	4.9e-59	71.43	Ribonuclease P/MRP protein subunit POP5 OS=Gossypium raimondii GN=B456_001G00050...	[more]
A0A0D2QNZ4_GOSRA	8.3e-59	72.73	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G114700 PE=4 SV=1	[more]

BLAST of MELO3C023673 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G04635.1	1.7e-47	61.94	ribonuclease P family protein / Rpp14 family protein	[more]

BLAST of MELO3C023673 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659123073\|ref\|XP_008461474.1\|	1.2e-82	100.00	PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis melo]	[more]
gi\|449443879\|ref\|XP_004139703.1\|	1.5e-77	94.81	PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus]	[more]
gi\|700189194\|gb\|KGN44427.1\|	1.1e-69	97.08	hypothetical protein Csa_7G290500 [Cucumis sativus]	[more]
gi\|1000979288\|ref\|XP_002513218.2\|	1.1e-59	74.68	PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Ricinus communis]	[more]
gi\|763738853\|gb\|KJB06352.1\|	1.8e-59	72.08	hypothetical protein B456_001G000500 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002759	RNase_P/MRP_subunit

Vocabulary: **Molecular Function**
Term	Definition
GO:0004540	ribonuclease activity

Vocabulary: **Biological Process**
Term	Definition
GO:0008033	tRNA processing

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0008033	tRNA processing
biological_process	GO:0016070	RNA metabolic process
biological_process	GO:0009249	protein lipoylation
biological_process	GO:0090501	RNA phosphodiester bond hydrolysis
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030677	ribonuclease P complex
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004526	ribonuclease P activity
molecular_function	GO:0004540	ribonuclease activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU56724	melon EST collection version 4.0	transcribed_cluster
MU64490	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023673T2	MELO3C023673T2	mRNA
MELO3C023673T1	MELO3C023673T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU64490	MU64490	transcribed_cluster
MU56724	MU56724	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C023673	Csa7G290500	Cucumber (Chinese Long) v2	cumeB528
MELO3C023673	Cla016371	Watermelon (97103) v1	mewmB193
MELO3C023673	ClCG09G010380	Watermelon (Charleston Gray)	mewcgB172
MELO3C023673	Cla97C09G173090	Watermelon (97103) v2	mewmbB220
MELO3C023673	Bhi09G001319	Wax gourd	mewgoB247
MELO3C023673	CSPI07G12220	Wild cucumber (PI 183967)	cpimeB548
MELO3C023673	Cucsa.079900	Cucumber (Gy14) v1	cgymeB083
MELO3C023673	CmaCh01G009130	Cucurbita maxima (Rimu)	cmameB396
MELO3C023673	CmoCh01G009740	Cucurbita moschata (Rifu)	cmomeB396
MELO3C023673	Lsi02G019480	Bottle gourd (USVL1VR-Ls)	lsimeB199
MELO3C023673	Cp4.1LG02g09220	Cucurbita pepo (Zucchini)	cpemeB502
MELO3C023673	CsGy7G011380	Cucumber (Gy14) v2	cgybmeB479
MELO3C023673	CsaV3_7G024240	Cucumber (Chinese Long) v3	cucmeB559

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023673	Cucurbita maxima (Rimu)	cmameB019
MELO3C023673	Cucurbita moschata (Rifu)	cmomeB008
MELO3C023673	Cucurbita pepo (Zucchini)	cpemeB712