Lsi02G019480 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi02G019480
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRibonuclease P/MRP protein subunit POP5
Locationchr02 : 25373868 .. 25377407 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAACCCCAAAAACAAAAAAGGAACCCAGCTTCATCTTCTCCCCCTCTCCCTCACACAGCCGCCGCCGCCCCCTTGCTCAATCTCGTTCGCCGGCGACTACACAGCAAACCCACAAGCAGCGGCGGTGGCCATAGACTCCGGCGAACTGTCTTTGTGCATCAGACGTAGCGCTCTTGCGCGTTCCCTTGCTCAACGATCGACGGCGGTGGTTCGGTGTCGGAAGCGCACGGATCTAGCGTGCGACGCGGGCACCACTTCAGACGCCCTTGCTCGGACCTTCGCAACAACGTTTCTCTCCGTTTCGACGAGTTTCGGCGCTGACCCACACCCCAATTGGTCTCAAATCAGTTTACCCATAACGTTTAAGGTTCAGTTCGGCTAGCTCGATCGTTTTTGAACACCAACCAGCAAGGATCAGAGCCTCTTCGGTAAGATTTTGTAATGATAGTTGCTTTAATTTTCTTTTCGAATTCGATTAAGTGTTCAAAAATTCTGACCCACTAGAACTCATCGGTTGTTATGTTTGGGTGTTCAATTAAGTTCCACAAGTATTAACATGCCTTGAGCCATTTCGGACTCAATTAATGGATGTTAGACCAGTCTTTGACTTGTAAAAGTTTGTTGTTCGTAGTTTTGGACTAATTCAGAGTGATTGGTTAAGGTTTATGGTTGATTTTAGATAAGGATGTCATTATCTCGATTTCAAATAAGGTTCTTGAATTGAGTTCAAATTTCTAAACTTCGTCTTGATTATTTAGATTTCGAGGAAGTTGACATTTGTTCAAAAGTGAATTTTTAATTGAGAATTGTAGGATTGTCGATCATAGTTTTCACATCCATTCCAAAATATAAATTAGTTCAATTATGTTTTTACTATTATGACTTGACAAATGTTTGAAAGTATGTTATATGTGATTTGAAAATTGATTGAAATTGTTTGGTATGTTTTAACGGTTTTTGCTAAATGAAAGTATGTGATTATTTTGAAAGCTTAGCATGGCCCTGCGCAAGGATTTTTGTTTACAAATGTTTGGAAAGAAAATGGATTTCAAAGCATGATACAAAAATTGCTTATTGAGTATTTTTGTACTCAATTTTGTTTTTCTGAAATGTTTTTAGATGAAGAATTAGATTAAAGTTTTGAAAGCAGTGAAGTTTGGAGTTTTGGTGCAAGGTGTCAAAAGATATTTCTTTTAGGTTATGAAAGGTTATCCTAGAAATAGTCTGTAATAAGTTGCTTCCGCTGATGTGTGCAAGTTGTCAAAATTTCTAATTGTTATGTTTTCTTCATTTTTGTTATAATAGTTGTATTGGAAAATACAAGCTATTCTAGGGATCACATCCTTTGGAAATGAGAATTCGTGCTCCCTGTCTAGATTTGTTTTCCTAGAGGTTTGGTTTTGTGCTCGCCCATCAAAGGGACATTAGTGTTTATGATGGGAGAGTTTCTTCTCCATCTGCCCTTTTGTTTGAAAGGTTGTTTCTTGTGGTTGGTTGGCGCGTGTGTTAATGTGGAATCTTTGGAGAGAAAGGAATAAATCGAGTGTTTAGAGCGTTGGACAAGGAACCTAGTGATGTATATGCCCTTATCAGGTTTCGTGTTTCCCTTAGGGTTTTGACTTCAAAGTTTTTTTTTTTAATTTTTTTTAATTCTTGATTGGACCATTTTCTTTAGCGGGATTCCTAACTTGGATGTTCGTAAACCCTTGTATTCTTTCATTTTTTTCTCAATAGTAGTGGTTGCTTTATTAAGAAAAAAAGAGTTTAGTGATCTTTGACTGGCTGCTTTTATGGTGGAAGATTTAGTTTGTGAGTTTTGTTTGATATCAGGTGATTATCTTTGTTTTCTTCTTTCCTTTTAGGCATATTTTGTTATCGAAATTAGAAGGAACAAAGCAATGGTGAGGTTTAAAAACCGATACATGGTGCTTGAAGTTCTTTTGGATCCCAATAAAGACCTTAAAACAGATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGCAATCAAGGACAGTATTCTTCTCAACTTCGGGGAATGTGGTTTTGCTTCCTCACTTGGGTCTTTTCAAGGTAGATAAAACTGCATCATACTAATACTTTCTTCAACTTCCATTTGTGTTAACATCATACATATATATTTATATAGCTTAATCTTTCTTCTTGCCTTCTTGGTGTTTATGTAGTTAAGTATGTAAATCCAATCACGAAGTTGTGTATTATTAGAGCCTCCAGAGAGGACTACCAAAATGTCTGGGCTGCAATTACTATGGTGAGGACTATCAGCAATTGCCCCGTTGTATTCAATCTACTGGACCTAAGTGGTAAGTTTGTTTTTTAGGATCACTGTTTATAGTGTTGACTATTCCCATCTGGCTATAGACAATTGTGCTTGAAGGATGTAATCAGGAAGTGACATGACAAGTTTTGAAATTGTAAATAATTTGAACTCCCTTTTTCCTTTTTGCTCTTATTCATTTTTTTGATTTAGAAAAGAAGGGACCTTAGTAATCATCATGAATTGGCATGTGATCAATAATGCCGACGTAAATAGGAAAGGGCTTTGAGGAAATGGATTTAAACCATGGTGACCACCTATTTAAGAATTAATATCTTACGAGTTACTTTGACAACGAAATGTAGTAGACAGTCTAGCGATTGGCTCATGAGAATAATCGAGATTGTACAAGTTGATCTAGAAACTCACTAATGTTTATTTTTATTTTTTTATTTTCTTTTGTGAAGAAAAAGAAAAAATCTGGGGTGTGTATCTGCACAGCATTCTTTTATATAGTGGCGAAAGTTACAAGTGGTAAAAGCTAAAGGGAAATTGCAAAAGTAAATTGTTTTTTGCTATATTATCTTACACTATTTTCAATTCTGGTTAGGGTGGAATTCAAATAACCAATTTTTTTGGTTTTGTATACCCTATGATTGGATCCTTTTGTATCCTTGGATATCTTTGGATATTTCATTCAATCAATTAAATTGTCTCTTATCTCAAAAAAAAAAAAAAATGACCAACATTGGTGGTTTTTCTTTTTTCCCCACTTGAGGGGTTTGATGATATGATTTCTTACTTGTATAAGTCGCCAATATAATTTAACAAATCACATTCACTTTCTTTTATTTTTTTTTACAGGAAATACAAGGGCTTGCAAAAACACCGCTTTAAAGCTCGATGAATTGAGGTTTGAGCAATACAAGCTTATGGTTGGACATCGTCTACCAGATAATGTGAATCTGCAAATGCAGAACTGTCTTGAGAAGATTACAACTTTAGAAAACTGATTGTATTGTTGGCATGTATATATTAAGTCCATTCCAAGTGAAATTTTAGTTAGATAGATTACTTCATTCCCAGACATTTTTATTCCTTGCACTAGTTGCCCTTTGTATTTATTTCGTTTTGTTTAGATGTATGAGATAATTATCTTGAATTTATATCTAGTAGTTGTTAAAGATATGAAATTCACATTCACAGATGAGACGGTCACATTGTGACAACTTCATTGAATAAATTTTCATTGTTTG

mRNA sequence

GGAAAACCCCAAAAACAAAAAAGGAACCCAGCTTCATCTTCTCCCCCTCTCCCTCACACAGCCGCCGCCGCCCCCTTGCTCAATCTCGTTCGCCGGCGACTACACAGCAAACCCACAAGCAGCGGCGGTGGCCATAGACTCCGGCGAACTGTCTTTGTGCATCAGACGTAGCGCTCTTGCGCGTTCCCTTGCTCAACGATCGACGGCGGTGGTTCGGTGTCGGAAGCGCACGGATCTAGCGTGCGACGCGGGCACCACTTCAGACGCCCTTGCTCGGACCTTCGCAACAACGTTTCTCTCCGTTTCGACGAGTTTCGGCGCTGACCCACACCCCAATTGGTCTCAAATCAGTTTACCCATAACGTTTAAGGTTCAGTTCGGCTAGCTCGATCGTTTTTGAACACCAACCAGCAAGGATCAGAGCCTCTTCGGCATATTTTGTTATCGAAATTAGAAGGAACAAAGCAATGGTGAGGTTTAAAAACCGATACATGGTGCTTGAAGTTCTTTTGGATCCCAATAAAGACCTTAAAACAGATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGCAATCAAGGACAGTATTCTTCTCAACTTCGGGGAATGTGGTTTTGCTTCCTCACTTGGGTCTTTTCAAGTTAAGTATGTAAATCCAATCACGAAGTTGTGTATTATTAGAGCCTCCAGAGAGGACTACCAAAATGTCTGGGCTGCAATTACTATGGTGAGGACTATCAGCAATTGCCCCGTTGTATTCAATCTACTGGACCTAAGTGGAAATACAAGGGCTTGCAAAAACACCGCTTTAAAGCTCGATGAATTGAGGTTTGAGCAATACAAGCTTATGGTTGGACATCGTCTACCAGATAATGTGAATCTGCAAATGCAGAACTGTCTTGAGAAGATTACAACTTTAGAAAACTGATTGTATTGTTGGCATGTATATATTAAGTCCATTCCAAGTGAAATTTTAGTTAGATAGATTACTTCATTCCCAGACATTTTTATTCCTTGCACTAGTTGCCCTTTGTATTTATTTCGTTTTGTTTAGATGTATGAGATAATTATCTTGAATTTATATCTAGTAGTTGTTAAAGATATGAAATTCACATTCACAGATGAGACGGTCACATTGTGACAACTTCATTGAATAAATTTTCATTGTTTG

Coding sequence (CDS)

ATGGTGAGGTTTAAAAACCGATACATGGTGCTTGAAGTTCTTTTGGATCCCAATAAAGACCTTAAAACAGATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGCAATCAAGGACAGTATTCTTCTCAACTTCGGGGAATGTGGTTTTGCTTCCTCACTTGGGTCTTTTCAAGTTAAGTATGTAAATCCAATCACGAAGTTGTGTATTATTAGAGCCTCCAGAGAGGACTACCAAAATGTCTGGGCTGCAATTACTATGGTGAGGACTATCAGCAATTGCCCCGTTGTATTCAATCTACTGGACCTAAGTGGAAATACAAGGGCTTGCAAAAACACCGCTTTAAAGCTCGATGAATTGAGGTTTGAGCAATACAAGCTTATGGTTGGACATCGTCTACCAGATAATGTGAATCTGCAAATGCAGAACTGTCTTGAGAAGATTACAACTTTAGAAAACTGA

Protein sequence

MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDELRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN
Homology
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BLAST of Lsi02G019480 vs. Swiss-Prot
Match: POP5_ARATH (Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1687 PE=2 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-48
Identity = 98/155 (63.23%), Postives = 121/155 (78.06%), Query Frame = 1 

Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDD-PIIITQYNVSKAIKDSILLNFGECGFASSLGSFQ 60
           MV FKNRYM++EV LDP+KDL  +  PII+TQ+N+SKAIKDSIL+NFGECG  SSLGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  VKYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLD 120
           VKYVNPITKLCI+R+SRE+++ VW AIT+V++I NCPV+ NLLD+SG  RAC++TALK D
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query: 121 ELRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
           + +FEQ        L +    QM   LEKI  LEN
Sbjct: 121 KEKFEQ----CSKSLSEEEIRQMNTSLEKIKLLEN 151

[Close]
BLAST of Lsi02G019480 vs. Swiss-Prot
Match: POP5_SCHPO (Ribonuclease P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC830.09c PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-13
Identity = 44/134 (32.84%), Postives = 72/134 (53.73%), Query Frame = 1 

Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPII-----ITQYNVSKAIKDSILLNFGECGFASSL 60
           MVRFK+RY++ EVL    K+   D P I     IT  ++SK I+  +  NFG+ G     
Sbjct: 1   MVRFKSRYLLFEVLYPEAKEF-FDYPTIPSDSSITTSSLSKIIRTMVAENFGDVGIGKVA 60

Query: 61  GSFQVKYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTA 120
            S  VKY +P T   I+R SR+ ++  WAA+ ++R +   PV+  ++ +SG  +  +  A
Sbjct: 61  SSLTVKYFSPNTSTGILRVSRQHFRLAWAALVLIRELYGKPVIIRVVRVSGTIKKAELAA 120

Query: 121 LKLDELRFEQYKLM 130
           ++ ++       LM
Sbjct: 121 IERNKSEIHNISLM 133

[Close]
BLAST of Lsi02G019480 vs. Swiss-Prot
Match: POP5_DICDI (Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium discoideum GN=pop5 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-11
Identity = 36/118 (30.51%), Postives = 67/118 (56.78%), Query Frame = 1 

Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVR KNRY++ EV+   N+         + Q+ +S  +K+ +    GE  + +   + ++
Sbjct: 1   MVRLKNRYLMTEVIWHDNEKSTQLSDSWLFQF-ISNEVKEKL----GELTYEAFKKTLKI 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKL 119
            YVNP T + IIR S E Y+++W A+T++ +    P+ F ++ + G+ R C+  A+K+
Sbjct: 61  IYVNPDTNIFIIRVSFEYYKSLWTALTLITSYYGVPIYFRMVHVGGSIRLCQKAAIKI 113

[Close]
BLAST of Lsi02G019480 vs. TrEMBL
Match: A0A0A0K7W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290500 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.3e-67
Identity = 128/137 (93.43%), Postives = 134/137 (97.81%), Query Frame = 1 

Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVRFKNRYMV EVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDE 120
           KYVNPITK+CIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDLSGNTRACKNTAL+L+ 
Sbjct: 61  KYVNPITKVCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLEG 120

Query: 121 LRFEQYKLMVGHRLPDN 138
           L+FEQYKLMVGH LPDN
Sbjct: 121 LKFEQYKLMVGHYLPDN 137

[Close]
BLAST of Lsi02G019480 vs. TrEMBL
Match: A0A061ESH1_THECC (Ribonuclease P family protein / Rpp14 family protein isoform 1 OS=Theobroma cacao GN=TCM_020284 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.8e-61
Identity = 116/154 (75.32%), Postives = 135/154 (87.66%), Query Frame = 1 

Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRYMV+EV LDPNK+   DDPI++TQ+N+SKAIKDSIL+NFGECG ASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNKENLGDDPIVVTQFNISKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDE 120
           KYVNPITKLC+IRASREDYQ +W+AI++VR+I +CPV+FNLLDLSG+ RACKN ALK DE
Sbjct: 61  KYVNPITKLCVIRASREDYQKIWSAISLVRSIGSCPVLFNLLDLSGSIRACKNAALKCDE 120

Query: 121 LRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
           L+FEQYKLMVG RL  +V   MQNCLEKI  LE+
Sbjct: 121 LKFEQYKLMVGARLSADVTQHMQNCLEKIKILEH 154

[Close]
BLAST of Lsi02G019480 vs. TrEMBL
Match: A0A0D2QNZ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G114700 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 5.2e-61
Identity = 114/154 (74.03%), Postives = 133/154 (86.36%), Query Frame = 1 

Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRYMV+EVLLDPNK++  DDPI++TQ+N+SKAIKDSIL+NFGECG ASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVLLDPNKEISGDDPIVVTQFNISKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDE 120
           KYVNPITKLC+IR SR++YQ +W +I+MVR I NCPV+FNLLDLSGN +ACK  ALK DE
Sbjct: 61  KYVNPITKLCVIRVSRDEYQKIWTSISMVRRIGNCPVLFNLLDLSGNIKACKTAALKCDE 120

Query: 121 LRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
           L+FEQYKLMVG RL  +V   MQNCLEKI  LE+
Sbjct: 121 LKFEQYKLMVGARLLADVTQHMQNCLEKIRILEH 154

[Close]
BLAST of Lsi02G019480 vs. TrEMBL
Match: A0A0B0N993_GOSAR (Putative ribonuclease P/MRP subunit POP5-like protein OS=Gossypium arboreum GN=F383_36351 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 6.7e-61
Identity = 113/154 (73.38%), Postives = 134/154 (87.01%), Query Frame = 1 

Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRYMV+EVLLDPNK++  DDPI++TQ+N+SKAIKDSIL+NFGECG ASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVLLDPNKEISGDDPIVVTQFNISKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDE 120
           KYVNPITKLC+IR SR++YQ +W++I+MVR I NCPV+FNLLDLSGN +ACK  ALK DE
Sbjct: 61  KYVNPITKLCVIRVSRDEYQKIWSSISMVRRIGNCPVLFNLLDLSGNIKACKTAALKCDE 120

Query: 121 LRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
           L+FEQYKLMVG RL  +V   M+NCLEKI  LE+
Sbjct: 121 LKFEQYKLMVGARLSADVTQHMKNCLEKIRILEH 154

[Close]
BLAST of Lsi02G019480 vs. TrEMBL
Match: B9IDE0_POPTR (Ribonuclease P family protein OS=Populus trichocarpa GN=POPTR_0015s00340g PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.5e-60
Identity = 118/154 (76.62%), Postives = 130/154 (84.42%), Query Frame = 1 

Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRYMV+EV LDPN+DL  DDPIIITQYNVSKAIKDSIL+NFGECG ASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNRDLGVDDPIIITQYNVSKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDE 120
           KYVNPITKLCIIR SRE+YQ VW+AITMVR I NCPV+FNLLDLSG+ +ACK  ALK DE
Sbjct: 61  KYVNPITKLCIIRTSREEYQKVWSAITMVRRIGNCPVLFNLLDLSGSIKACKVAALKCDE 120

Query: 121 LRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
           ++FE YKL  G  L  +VN  MQNCLEKI  LE+
Sbjct: 121 MKFEHYKLAAGAPLSTDVNQHMQNCLEKIKILEH 154

[Close]
BLAST of Lsi02G019480 vs. TAIR10
Match: AT1G04635.1 (AT1G04635.1 ribonuclease P family protein / Rpp14 family protein)

HSP 1 Score: 193.4 bits (490), Expect = 1.1e-49
Identity = 98/155 (63.23%), Postives = 121/155 (78.06%), Query Frame = 1 

Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDD-PIIITQYNVSKAIKDSILLNFGECGFASSLGSFQ 60
           MV FKNRYM++EV LDP+KDL  +  PII+TQ+N+SKAIKDSIL+NFGECG  SSLGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  VKYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLD 120
           VKYVNPITKLCI+R+SRE+++ VW AIT+V++I NCPV+ NLLD+SG  RAC++TALK D
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query: 121 ELRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
           + +FEQ        L +    QM   LEKI  LEN
Sbjct: 121 KEKFEQ----CSKSLSEEEIRQMNTSLEKIKLLEN 151

[Close]
BLAST of Lsi02G019480 vs. NCBI nr
Match: gi|449443879|ref|XP_004139703.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus])

HSP 1 Score: 295.0 bits (754), Expect = 7.4e-77
Identity = 144/154 (93.51%), Postives = 150/154 (97.40%), Query Frame = 1 

Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVRFKNRYMV EVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDE 120
           KYVNPITK+CIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDLSGNTRACKNTAL+L+ 
Sbjct: 61  KYVNPITKVCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLEG 120

Query: 121 LRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
           L+FEQYKLMVGH LPDNVNLQMQNCLEKI TLEN
Sbjct: 121 LKFEQYKLMVGHYLPDNVNLQMQNCLEKIATLEN 154

[Close]
BLAST of Lsi02G019480 vs. NCBI nr
Match: gi|659123073|ref|XP_008461474.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis melo])

HSP 1 Score: 288.5 bits (737), Expect = 6.9e-75
Identity = 141/154 (91.56%), Postives = 147/154 (95.45%), Query Frame = 1 

Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVRFKNRYMV EVLLDPNK+LKTDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDE 120
           KYVNPITKLCIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDLSGNTRACKNTAL+LD 
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120

Query: 121 LRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
           L+FEQYKLMVGH LPDNV + MQNCLEKI  LEN
Sbjct: 121 LKFEQYKLMVGHCLPDNVKIHMQNCLEKIANLEN 154

[Close]
BLAST of Lsi02G019480 vs. NCBI nr
Match: gi|700189194|gb|KGN44427.1| (hypothetical protein Csa_7G290500 [Cucumis sativus])

HSP 1 Score: 263.8 bits (673), Expect = 1.8e-67
Identity = 128/137 (93.43%), Postives = 134/137 (97.81%), Query Frame = 1 

Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MVRFKNRYMV EVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDE 120
           KYVNPITK+CIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDLSGNTRACKNTAL+L+ 
Sbjct: 61  KYVNPITKVCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLEG 120

Query: 121 LRFEQYKLMVGHRLPDN 138
           L+FEQYKLMVGH LPDN
Sbjct: 121 LKFEQYKLMVGHYLPDN 137

[Close]
BLAST of Lsi02G019480 vs. NCBI nr
Match: gi|225455163|ref|XP_002268478.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Vitis vinifera])

HSP 1 Score: 247.3 bits (630), Expect = 1.8e-62
Identity = 117/154 (75.97%), Postives = 137/154 (88.96%), Query Frame = 1 

Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRYM++EV LDPN+DL  DDPIIITQ+NVSKAIKDSIL+NFGECG ASS GSFQV
Sbjct: 1   MVGFKNRYMIMEVFLDPNRDLAVDDPIIITQFNVSKAIKDSILVNFGECGLASSFGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDE 120
           KYVNPITKLCIIRASRE+YQ VW+AITMV++I +CPV+FNLLDLSG+ RAC+N ALK D+
Sbjct: 61  KYVNPITKLCIIRASREEYQKVWSAITMVKSIGHCPVLFNLLDLSGSIRACRNAALKCDK 120

Query: 121 LRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
            +FEQYKL+VG RL D++N QMQNCLE+I  LE+
Sbjct: 121 AKFEQYKLVVGDRLTDDINNQMQNCLERIKILEH 154

[Close]
BLAST of Lsi02G019480 vs. NCBI nr
Match: gi|1000979288|ref|XP_002513218.2| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Ricinus communis])

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61
Identity = 117/154 (75.97%), Postives = 134/154 (87.01%), Query Frame = 1 

Query: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRYMV+E+ LDPN+DL TDDPIIITQ+NVSKAIK+SIL+N+GECG ASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEIFLDPNRDLNTDDPIIITQFNVSKAIKESILVNYGECGLASSLGSFQV 60

Query: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALKLDE 120
           KYVNPITKLCIIRASRE+YQ VW+A+TMVR+I NCPV+FNLLDLSG+ RACK  ALK DE
Sbjct: 61  KYVNPITKLCIIRASREEYQKVWSAVTMVRSIGNCPVLFNLLDLSGSIRACKRAALKCDE 120

Query: 121 LRFEQYKLMVGHRLPDNVNLQMQNCLEKITTLEN 155
            +FEQ+KL VG  L  +V L MQNCLEKI  LE+
Sbjct: 121 AKFEQHKLAVGDHLSADVTLHMQNCLEKIKILEH 154

The following BLAST results are available for this feature:
BLAST of Lsi02G019480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POP5_ARATH1.9e-4863.23Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1... [more]
POP5_SCHPO1.2e-1332.84Ribonuclease P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe (strain 972... [more]
POP5_DICDI1.4e-1130.51Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium discoideum GN=... [more]
BLAST of Lsi02G019480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7W3_CUCSA1.3e-6793.43Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290500 PE=4 SV=1[more]
A0A061ESH1_THECC1.8e-6175.32Ribonuclease P family protein / Rpp14 family protein isoform 1 OS=Theobroma caca... [more]
A0A0D2QNZ4_GOSRA5.2e-6174.03Uncharacterized protein OS=Gossypium raimondii GN=B456_001G114700 PE=4 SV=1[more]
A0A0B0N993_GOSAR6.7e-6173.38Putative ribonuclease P/MRP subunit POP5-like protein OS=Gossypium arboreum GN=F... [more]
B9IDE0_POPTR1.5e-6076.62Ribonuclease P family protein OS=Populus trichocarpa GN=POPTR_0015s00340g PE=4 S... [more]
BLAST of Lsi02G019480 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G04635.11.1e-4963.23 ribonuclease P family protein / Rpp14 family protein[more]
BLAST of Lsi02G019480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443879|ref|XP_004139703.1|7.4e-7793.51PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus][more]
gi|659123073|ref|XP_008461474.1|6.9e-7591.56PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis melo][more]
gi|700189194|gb|KGN44427.1|1.8e-6793.43hypothetical protein Csa_7G290500 [Cucumis sativus][more]
gi|225455163|ref|XP_002268478.1|1.8e-6275.97PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Vitis vinifera][more]
gi|1000979288|ref|XP_002513218.2|1.9e-6175.97PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008033tRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0004540ribonuclease activity
Vocabulary: INTERPRO
TermDefinition
IPR002759RNase_P/MRP_subunit
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009249 protein lipoylation
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0008033 tRNA processing
biological_process GO:0090501 RNA phosphodiester bond hydrolysis
cellular_component GO:0030677 ribonuclease P complex
cellular_component GO:0005773 vacuole
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0004526 ribonuclease P activity
molecular_function GO:0004540 ribonuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G019480.1Lsi02G019480.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002759Ribonuclease P/MRP protein subunitPFAMPF01900RNase_P_Rpp14coord: 7..115
score: 2.6
NoneNo IPR availablePANTHERPTHR10993OCTANOYLTRANSFERASEcoord: 2..149
score: 3.5
NoneNo IPR availableunknownSSF160350Rnp2-likecoord: 1..119
score: 1.01

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi02G019480Csa7G290500Cucumber (Chinese Long) v2culsiB503
Lsi02G019480CSPI07G12220Wild cucumber (PI 183967)cpilsiB517
Lsi02G019480Cucsa.079900Cucumber (Gy14) v1cgylsiB081
Lsi02G019480CmaCh01G009130Cucurbita maxima (Rimu)cmalsiB419
Lsi02G019480CmoCh01G009740Cucurbita moschata (Rifu)cmolsiB397
Lsi02G019480Cla016371Watermelon (97103) v1lsiwmB175
Lsi02G019480MELO3C023673Melon (DHL92) v3.5.1lsimeB199
Lsi02G019480ClCG09G010380Watermelon (Charleston Gray)lsiwcgB159
Lsi02G019480MELO3C023673.2Melon (DHL92) v3.6.1lsimedB207
Lsi02G019480Cla97C09G173090Watermelon (97103) v2lsiwmbB212
Lsi02G019480Bhi09G001319Wax gourdlsiwgoB280
Lsi02G019480Cp4.1LG02g09220Cucurbita pepo (Zucchini)cpelsiB448
Lsi02G019480CsGy7G011380Cucumber (Gy14) v2cgyblsiB472
Lsi02G019480CsaV3_7G024240Cucumber (Chinese Long) v3cuclsiB538
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi02G019480Cucurbita maxima (Rimu)cmalsiB017
Lsi02G019480Cucurbita maxima (Rimu)cmalsiB019
Lsi02G019480Cucurbita maxima (Rimu)cmalsiB411
Lsi02G019480Cucurbita moschata (Rifu)cmolsiB005
Lsi02G019480Cucurbita moschata (Rifu)cmolsiB007
Lsi02G019480Cucurbita pepo (Zucchini)cpelsiB632
Lsi02G019480Cucurbita pepo (Zucchini)cpelsiB634
Lsi02G019480Melon (DHL92) v3.5.1lsimeB189
Lsi02G019480Watermelon (97103) v1lsiwmB174
Lsi02G019480Melon (DHL92) v3.6.1lsimedB198
Lsi02G019480Silver-seed gourdcarlsiB005