CmoCh01G009740 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G009740
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRibonuclease P/MRP protein subunit POP5
LocationCmo_Chr01 : 6259295 .. 6260359 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGTTTTAAGAACCGATACTTGGTGTTTGAAGTAGTGTTGGATCCCAATAAAGACGTTGCAACAGATGATCCTATTATCATTACCCAATATAATGTCTCAAAAGCAATCAAGGACAGTATTCTTCTCAACTTCGGGGAGTGTGGCTTTGCTTCCTCACTTGGATCTTTTCAAGGTACATAAACCGTGTCTTTCTAAACAACATCGCAACCTCTGTATTTGTATAGCCTAATATTTGTTCTTGCCTTGGTGTTTATGTAGTTAGGTATGTAAATCCAATCACAAAGCTGTGTATCATTAGAGCCTCTAGAGAGGACTACCAGAATGTATGGGCTGCAATTACGATGGTGAGGAGTATCAGCAATTGCCCCGTTGTATTTAATCTACTGGACCTAACTGGTAAGTTTTTTGGTTAGGATCATCGTTTATGTTGCTGACTTCCAATTTGGGTATACACAATTGTGCTTGTACTTCAAGAATATAATCAGAATATGAATTTTGAACTTGTAAATAAGTTTAAACTCTTGTTCTGGGTAATTTCAATCCTTGTCTATTTTGTGCTGCACTGATTTGTAATAGAATTGAAGAAATGACATTGAATGAATGCGTTTTGTTTTACAGGAAATAGCAGGGCTTGCAAGAACACCGCCTTGAGGCTGGATGAACTGAAATTTGAGCAGTACAAGCTTATGGTTGGACCTCGTATCTCTGATGGCGTCAATCTGCAAATGCAGAACTGTCTAGAGAAGATTAGAAGTTTAGATAACTGATTTGATTGAATTTTGAATTTGATTTCATATTGTTCACAGCTCAGCCCCTCTTCAGGTGTGTTTTTGCTACCGTAGTCTGGCTCTTTATATGGGTATGATTTTCGAATCTTTCATATTAGGAAGAAAGATATTTAATTCTGACAATATTGAAGGTGTTCATAGTTCTTTCATAAGAATGATGTTGAGAATGTTTGAGACTATGCCAAGCAGTTTTCTAAGCTTATGTCAGATGTTTGTGACATGTTTAAAAAAGACGAGGTTTTTTGTTTTGTCAAGAAATTGAAGTTGTGAG

mRNA sequence

ATGGTGAGTTTTAAGAACCGATACTTGGTGTTTGAAGTAGTGTTGGATCCCAATAAAGACGTTGCAACAGATGATCCTATTATCATTACCCAATATAATGTCTCAAAAGCAATCAAGGACAGTATTCTTCTCAACTTCGGGGAGTGTGGCTTTGCTTCCTCACTTGGATCTTTTCAAGTTAGGTATGTAAATCCAATCACAAAGCTGTGTATCATTAGAGCCTCTAGAGAGGACTACCAGAATGTATGGGCTGCAATTACGATGGTGAGGAGTATCAGCAATTGCCCCGTTGTATTTAATCTACTGGACCTAACTGGAAATAGCAGGGCTTGCAAGAACACCGCCTTGAGGCTGGATGAACTGAAATTTGAGCAGTACAAGCTTATGGTTGGACCTCGTATCTCTGATGGCGTCAATCTGCAAATGCAGAACTGTCTAGAGAAGATTAGAAGTTTAGATAACTGATTTGATTGAATTTTGAATTTGATTTCATATTGTTCACAGCTCAGCCCCTCTTCAGGTGTGTTTTTGCTACCGTAGTCTGGCTCTTTATATGGGTATGATTTTCGAATCTTTCATATTAGGAAGAAAGATATTTAATTCTGACAATATTGAAGGTGTTCATAGTTCTTTCATAAGAATGATGTTGAGAATGTTTGAGACTATGCCAAGCAGTTTTCTAAGCTTATGTCAGATGTTTGTGACATGTTTAAAAAAGACGAGGTTTTTTGTTTTGTCAAGAAATTGAAGTTGTGAG

Coding sequence (CDS)

ATGGTGAGTTTTAAGAACCGATACTTGGTGTTTGAAGTAGTGTTGGATCCCAATAAAGACGTTGCAACAGATGATCCTATTATCATTACCCAATATAATGTCTCAAAAGCAATCAAGGACAGTATTCTTCTCAACTTCGGGGAGTGTGGCTTTGCTTCCTCACTTGGATCTTTTCAAGTTAGGTATGTAAATCCAATCACAAAGCTGTGTATCATTAGAGCCTCTAGAGAGGACTACCAGAATGTATGGGCTGCAATTACGATGGTGAGGAGTATCAGCAATTGCCCCGTTGTATTTAATCTACTGGACCTAACTGGAAATAGCAGGGCTTGCAAGAACACCGCCTTGAGGCTGGATGAACTGAAATTTGAGCAGTACAAGCTTATGGTTGGACCTCGTATCTCTGATGGCGTCAATCTGCAAATGCAGAACTGTCTAGAGAAGATTAGAAGTTTAGATAACTGA
Homology
[Close]
BLAST of CmoCh01G009740 vs. Swiss-Prot
Match: POP5_ARATH (Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1687 PE=2 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 9.4e-48
Identity = 94/155 (60.65%), Postives = 122/155 (78.71%), Query Frame = 1 

Query: 1   MVSFKNRYLVFEVVLDPNKDVATDD-PIIITQYNVSKAIKDSILLNFGECGFASSLGSFQ 60
           MV FKNRY++ EV LDP+KD+  +  PII+TQ+N+SKAIKDSIL+NFGECG  SSLGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  VRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLD 120
           V+YVNPITKLCI+R+SRE+++ VW AIT+V+SI NCPV+ NLLD++G  RAC++TAL+ D
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query: 121 ELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           + KFEQ        +S+    QM   LEKI+ L+N
Sbjct: 121 KEKFEQ----CSKSLSEEEIRQMNTSLEKIKLLEN 151

[Close]
BLAST of CmoCh01G009740 vs. Swiss-Prot
Match: POP5_SCHPO (Ribonuclease P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC830.09c PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.6e-13
Identity = 43/137 (31.39%), Postives = 73/137 (53.28%), Query Frame = 1 

Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPII-----ITQYNVSKAIKDSILLNFGECGFASSL 60
           MV FK+RYL+FEV+    K+   D P I     IT  ++SK I+  +  NFG+ G     
Sbjct: 1   MVRFKSRYLLFEVLYPEAKEFF-DYPTIPSDSSITTSSLSKIIRTMVAENFGDVGIGKVA 60

Query: 61  GSFQVRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTA 120
            S  V+Y +P T   I+R SR+ ++  WAA+ ++R +   PV+  ++ ++G  +  +  A
Sbjct: 61  SSLTVKYFSPNTSTGILRVSRQHFRLAWAALVLIRELYGKPVIIRVVRVSGTIKKAELAA 120

Query: 121 LRLDELKFEQYKLMVGP 133
           +  ++ +     LM  P
Sbjct: 121 IERNKSEIHNISLMDEP 136

[Close]
BLAST of CmoCh01G009740 vs. Swiss-Prot
Match: POP5_DICDI (Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium discoideum GN=pop5 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.4e-11
Identity = 36/118 (30.51%), Postives = 66/118 (55.93%), Query Frame = 1 

Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV  KNRYL+ EV+   N+         + Q+ +S  +K+ +    GE  + +   + ++
Sbjct: 1   MVRLKNRYLMTEVIWHDNEKSTQLSDSWLFQF-ISNEVKEKL----GELTYEAFKKTLKI 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRL 119
            YVNP T + IIR S E Y+++W A+T++ S    P+ F ++ + G+ R C+  A+++
Sbjct: 61  IYVNPDTNIFIIRVSFEYYKSLWTALTLITSYYGVPIYFRMVHVGGSIRLCQKAAIKI 113

[Close]
BLAST of CmoCh01G009740 vs. TrEMBL
Match: A0A0A0K7W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290500 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.2e-63
Identity = 120/136 (88.24%), Postives = 130/136 (95.59%), Query Frame = 1 

Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+VFEV+LDPNKD+ TDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITK+CIIRASREDYQNVWAAITMVRSISNCPVVFNLLDL+GN+RACKNTALRL+ 
Sbjct: 61  KYVNPITKVCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLEG 120

Query: 121 LKFEQYKLMVGPRISD 137
           LKFEQYKLMVG  + D
Sbjct: 121 LKFEQYKLMVGHYLPD 136

[Close]
BLAST of CmoCh01G009740 vs. TrEMBL
Match: A0A061ESH1_THECC (Ribonuclease P family protein / Rpp14 family protein isoform 1 OS=Theobroma cacao GN=TCM_020284 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.0e-61
Identity = 113/154 (73.38%), Postives = 135/154 (87.66%), Query Frame = 1 

Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+V EV LDPNK+   DDPI++TQ+N+SKAIKDSIL+NFGECG ASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNKENLGDDPIVVTQFNISKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITKLC+IRASREDYQ +W+AI++VRSI +CPV+FNLLDL+G+ RACKN AL+ DE
Sbjct: 61  KYVNPITKLCVIRASREDYQKIWSAISLVRSIGSCPVLFNLLDLSGSIRACKNAALKCDE 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVG R+S  V   MQNCLEKI+ L++
Sbjct: 121 LKFEQYKLMVGARLSADVTQHMQNCLEKIKILEH 154

[Close]
BLAST of CmoCh01G009740 vs. TrEMBL
Match: A0A0B0N993_GOSAR (Putative ribonuclease P/MRP subunit POP5-like protein OS=Gossypium arboreum GN=F383_36351 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.5e-60
Identity = 109/154 (70.78%), Postives = 135/154 (87.66%), Query Frame = 1 

Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+V EV+LDPNK+++ DDPI++TQ+N+SKAIKDSIL+NFGECG ASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVLLDPNKEISGDDPIVVTQFNISKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITKLC+IR SR++YQ +W++I+MVR I NCPV+FNLLDL+GN +ACK  AL+ DE
Sbjct: 61  KYVNPITKLCVIRVSRDEYQKIWSSISMVRRIGNCPVLFNLLDLSGNIKACKTAALKCDE 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVG R+S  V   M+NCLEKIR L++
Sbjct: 121 LKFEQYKLMVGARLSADVTQHMKNCLEKIRILEH 154

[Close]
BLAST of CmoCh01G009740 vs. TrEMBL
Match: A0A0D2QNZ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G114700 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.3e-60
Identity = 109/154 (70.78%), Postives = 133/154 (86.36%), Query Frame = 1 

Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+V EV+LDPNK+++ DDPI++TQ+N+SKAIKDSIL+NFGECG ASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVLLDPNKEISGDDPIVVTQFNISKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITKLC+IR SR++YQ +W +I+MVR I NCPV+FNLLDL+GN +ACK  AL+ DE
Sbjct: 61  KYVNPITKLCVIRVSRDEYQKIWTSISMVRRIGNCPVLFNLLDLSGNIKACKTAALKCDE 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVG R+   V   MQNCLEKIR L++
Sbjct: 121 LKFEQYKLMVGARLLADVTQHMQNCLEKIRILEH 154

[Close]
BLAST of CmoCh01G009740 vs. TrEMBL
Match: B9IDE0_POPTR (Ribonuclease P family protein OS=Populus trichocarpa GN=POPTR_0015s00340g PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 9.7e-60
Identity = 113/154 (73.38%), Postives = 130/154 (84.42%), Query Frame = 1 

Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+V EV LDPN+D+  DDPIIITQYNVSKAIKDSIL+NFGECG ASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNRDLGVDDPIIITQYNVSKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITKLCIIR SRE+YQ VW+AITMVR I NCPV+FNLLDL+G+ +ACK  AL+ DE
Sbjct: 61  KYVNPITKLCIIRTSREEYQKVWSAITMVRRIGNCPVLFNLLDLSGSIKACKVAALKCDE 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           +KFE YKL  G  +S  VN  MQNCLEKI+ L++
Sbjct: 121 MKFEHYKLAAGAPLSTDVNQHMQNCLEKIKILEH 154

[Close]
BLAST of CmoCh01G009740 vs. TAIR10
Match: AT1G04635.1 (AT1G04635.1 ribonuclease P family protein / Rpp14 family protein)

HSP 1 Score: 191.0 bits (484), Expect = 5.3e-49
Identity = 94/155 (60.65%), Postives = 122/155 (78.71%), Query Frame = 1 

Query: 1   MVSFKNRYLVFEVVLDPNKDVATDD-PIIITQYNVSKAIKDSILLNFGECGFASSLGSFQ 60
           MV FKNRY++ EV LDP+KD+  +  PII+TQ+N+SKAIKDSIL+NFGECG  SSLGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  VRYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLD 120
           V+YVNPITKLCI+R+SRE+++ VW AIT+V+SI NCPV+ NLLD++G  RAC++TAL+ D
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query: 121 ELKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           + KFEQ        +S+    QM   LEKI+ L+N
Sbjct: 121 KEKFEQ----CSKSLSEEEIRQMNTSLEKIKLLEN 151

[Close]
BLAST of CmoCh01G009740 vs. NCBI nr
Match: gi|449443879|ref|XP_004139703.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus])

HSP 1 Score: 277.3 bits (708), Expect = 1.6e-71
Identity = 134/154 (87.01%), Postives = 146/154 (94.81%), Query Frame = 1 

Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+VFEV+LDPNKD+ TDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITK+CIIRASREDYQNVWAAITMVRSISNCPVVFNLLDL+GN+RACKNTALRL+ 
Sbjct: 61  KYVNPITKVCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLEG 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVG  + D VNLQMQNCLEKI +L+N
Sbjct: 121 LKFEQYKLMVGHYLPDNVNLQMQNCLEKIATLEN 154

[Close]
BLAST of CmoCh01G009740 vs. NCBI nr
Match: gi|659123073|ref|XP_008461474.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis melo])

HSP 1 Score: 272.7 bits (696), Expect = 3.9e-70
Identity = 132/154 (85.71%), Postives = 144/154 (93.51%), Query Frame = 1 

Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+VFEV+LDPNK++ TDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDL+GN+RACKNTALRLD 
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVG  + D V + MQNCLEKI +L+N
Sbjct: 121 LKFEQYKLMVGHCLPDNVKIHMQNCLEKIANLEN 154

[Close]
BLAST of CmoCh01G009740 vs. NCBI nr
Match: gi|700189194|gb|KGN44427.1| (hypothetical protein Csa_7G290500 [Cucumis sativus])

HSP 1 Score: 248.8 bits (634), Expect = 6.1e-63
Identity = 120/136 (88.24%), Postives = 130/136 (95.59%), Query Frame = 1 

Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+VFEV+LDPNKD+ TDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITK+CIIRASREDYQNVWAAITMVRSISNCPVVFNLLDL+GN+RACKNTALRL+ 
Sbjct: 61  KYVNPITKVCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLEG 120

Query: 121 LKFEQYKLMVGPRISD 137
           LKFEQYKLMVG  + D
Sbjct: 121 LKFEQYKLMVGHYLPD 136

[Close]
BLAST of CmoCh01G009740 vs. NCBI nr
Match: gi|225455163|ref|XP_002268478.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Vitis vinifera])

HSP 1 Score: 245.4 bits (625), Expect = 6.7e-62
Identity = 113/154 (73.38%), Postives = 138/154 (89.61%), Query Frame = 1 

Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY++ EV LDPN+D+A DDPIIITQ+NVSKAIKDSIL+NFGECG ASS GSFQV
Sbjct: 1   MVGFKNRYMIMEVFLDPNRDLAVDDPIIITQFNVSKAIKDSILVNFGECGLASSFGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITKLCIIRASRE+YQ VW+AITMV+SI +CPV+FNLLDL+G+ RAC+N AL+ D+
Sbjct: 61  KYVNPITKLCIIRASREEYQKVWSAITMVKSIGHCPVLFNLLDLSGSIRACRNAALKCDK 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
            KFEQYKL+VG R++D +N QMQNCLE+I+ L++
Sbjct: 121 AKFEQYKLVVGDRLTDDINNQMQNCLERIKILEH 154

[Close]
BLAST of CmoCh01G009740 vs. NCBI nr
Match: gi|590656554|ref|XP_007034303.1| (Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 242.7 bits (618), Expect = 4.3e-61
Identity = 113/154 (73.38%), Postives = 135/154 (87.66%), Query Frame = 1 

Query: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60
           MV FKNRY+V EV LDPNK+   DDPI++TQ+N+SKAIKDSIL+NFGECG ASSLGSFQV
Sbjct: 1   MVGFKNRYMVMEVFLDPNKENLGDDPIVVTQFNISKAIKDSILVNFGECGLASSLGSFQV 60

Query: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120
           +YVNPITKLC+IRASREDYQ +W+AI++VRSI +CPV+FNLLDL+G+ RACKN AL+ DE
Sbjct: 61  KYVNPITKLCVIRASREDYQKIWSAISLVRSIGSCPVLFNLLDLSGSIRACKNAALKCDE 120

Query: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLDN 155
           LKFEQYKLMVG R+S  V   MQNCLEKI+ L++
Sbjct: 121 LKFEQYKLMVGARLSADVTQHMQNCLEKIKILEH 154

The following BLAST results are available for this feature:
BLAST of CmoCh01G009740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POP5_ARATH9.4e-4860.65Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1... [more]
POP5_SCHPO2.6e-1331.39Ribonuclease P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe (strain 972... [more]
POP5_DICDI5.4e-1130.51Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium discoideum GN=... [more]
BLAST of CmoCh01G009740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7W3_CUCSA4.2e-6388.24Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290500 PE=4 SV=1[more]
A0A061ESH1_THECC3.0e-6173.38Ribonuclease P family protein / Rpp14 family protein isoform 1 OS=Theobroma caca... [more]
A0A0B0N993_GOSAR1.5e-6070.78Putative ribonuclease P/MRP subunit POP5-like protein OS=Gossypium arboreum GN=F... [more]
A0A0D2QNZ4_GOSRA3.3e-6070.78Uncharacterized protein OS=Gossypium raimondii GN=B456_001G114700 PE=4 SV=1[more]
B9IDE0_POPTR9.7e-6073.38Ribonuclease P family protein OS=Populus trichocarpa GN=POPTR_0015s00340g PE=4 S... [more]
BLAST of CmoCh01G009740 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G04635.15.3e-4960.65 ribonuclease P family protein / Rpp14 family protein[more]
BLAST of CmoCh01G009740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443879|ref|XP_004139703.1|1.6e-7187.01PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus][more]
gi|659123073|ref|XP_008461474.1|3.9e-7085.71PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis melo][more]
gi|700189194|gb|KGN44427.1|6.1e-6388.24hypothetical protein Csa_7G290500 [Cucumis sativus][more]
gi|225455163|ref|XP_002268478.1|6.7e-6273.38PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Vitis vinifera][more]
gi|590656554|ref|XP_007034303.1|4.3e-6173.38Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002759RNase_P/MRP_subunit
Vocabulary: Molecular Function
TermDefinition
GO:0004540ribonuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0008033tRNA processing
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0008033 tRNA processing
biological_process GO:0090501 RNA phosphodiester bond hydrolysis
cellular_component GO:0005634 nucleus
cellular_component GO:0030677 ribonuclease P complex
cellular_component GO:0005773 vacuole
molecular_function GO:0004526 ribonuclease P activity
molecular_function GO:0004540 ribonuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G009740.1CmoCh01G009740.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002759Ribonuclease P/MRP protein subunitPFAMPF01900RNase_P_Rpp14coord: 7..115
score: 2.5
NoneNo IPR availablePANTHERPTHR10993OCTANOYLTRANSFERASEcoord: 2..153
score: 1.9
NoneNo IPR availableunknownSSF160350Rnp2-likecoord: 1..118
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G009740Cucsa.079900Cucumber (Gy14) v1cgycmoB0135
CmoCh01G009740CmaCh01G009130Cucurbita maxima (Rimu)cmacmoB471
CmoCh01G009740Cla016371Watermelon (97103) v1cmowmB405
CmoCh01G009740Csa7G290500Cucumber (Chinese Long) v2cmocuB478
CmoCh01G009740MELO3C023673Melon (DHL92) v3.5.1cmomeB396
CmoCh01G009740ClCG09G010380Watermelon (Charleston Gray)cmowcgB379
CmoCh01G009740CSPI07G12220Wild cucumber (PI 183967)cmocpiB484
CmoCh01G009740Lsi02G019480Bottle gourd (USVL1VR-Ls)cmolsiB397
CmoCh01G009740Cp4.1LG02g09220Cucurbita pepo (Zucchini)cmocpeB448
CmoCh01G009740MELO3C023673.2Melon (DHL92) v3.6.1cmomedB453
CmoCh01G009740CsaV3_7G024240Cucumber (Chinese Long) v3cmocucB0574
CmoCh01G009740Cla97C09G173090Watermelon (97103) v2cmowmbB498
CmoCh01G009740Bhi09G001319Wax gourdcmowgoB0621
CmoCh01G009740CsGy7G011380Cucumber (Gy14) v2cgybcmoB914
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G009740Watermelon (97103) v2cmowmbB491
CmoCh01G009740Wax gourdcmowgoB0607
CmoCh01G009740Wax gourdcmowgoB0608
CmoCh01G009740Cucurbita moschata (Rifu)cmocmoB015
CmoCh01G009740Cucumber (Gy14) v1cgycmoB0677
CmoCh01G009740Cucurbita maxima (Rimu)cmacmoB044
CmoCh01G009740Cucurbita maxima (Rimu)cmacmoB468
CmoCh01G009740Melon (DHL92) v3.5.1cmomeB387
CmoCh01G009740Watermelon (Charleston Gray)cmowcgB376
CmoCh01G009740Watermelon (97103) v1cmowmB401
CmoCh01G009740Cucurbita pepo (Zucchini)cmocpeB464
CmoCh01G009740Melon (DHL92) v3.6.1cmomedB444