MU56724 (transcribed_cluster) Melon (DHL92) v3.5.1

NameMU56724
Typetranscribed_cluster
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRibonuclease P/MRP protein subunit POP5
Locationchr1 : 7005083 .. 7010334 (-)
Sequence length522
The following sequences are available for this feature:

transcribed_cluster sequence

GAGCCTTTCACGATTTCTCACCTCTTTTGCTGCGATACTCTCCCTCTCACCACTGCCGTTCTACCGACGACGACACTTTCATCTCTGTCCCTCGTCGTCGTCTCTGTCCGTCGTCTCTGTCCGTCGTCTCTGTTCGTCTTCGTCTTCCCCGTCGTCCACATGGGTTTCGCTTAGGGTTCTTCGTCTACCGGCTCGTCTCTTTACTGCTATTAGACACTTGGAAGCTAATGATTCGAGATCTTAAGTTCCACATCCTCTTCTGACCTTCGTTTGTTTCCGACGACCTCTGCTGACTATCTCTTTGCATCAACAACAAGGCATAAGTCGTTACTGAAGTTAGAAGGTACAAAACAATGGTGAGGTTTAAAAACCGATACATGGTGTTTGAAGTTCTCTTGGATCCCAATAAAAACCTTAAAACATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGCAATCAAGGATAGTATTCTTCTCAACTTCGGGGAATGTGGTTTTGCTTCCGCACTTGGATCT
Library categoryESTs
melon A library1
BLAST of MU56724 vs. Swiss-Prot
Match: POP5_ARATH (Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1687 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.1e-07
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 1

Query: 427 PIIITQYNVSKAIKDSILLNFGECGFASALGS 486
           PII+TQ+N+SKAIKDSIL+NFGECG  S+LGS
Sbjct: 27  PIILTQFNLSKAIKDSILVNFGECGLGSSLGS 58

Query: 487 523
           
Sbjct: 87  58


HSP 2 Score: 35.0 bits (79), Expect = 9.7e-01
Identity = 15/21 (71.43%), Postives = 16/21 (76.19%), Query Frame = 3

Query: 354 MVRFKNRYMVFEVLLDPNKNL 413
           MV FKNRYM+ EV LDP+K+L
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDL 21

Query: 414 417
           
Sbjct: 61  21

BLAST of MU56724 vs. TrEMBL
Match: A0A0A0K7W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290500 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.0e-09
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 1

Query: 403 PIKTLK-HDPIIITQYNVSKAIKDSILLNFGECGFASALGS 462
           P K LK  DPIIITQYNVSKAIKDSILLNFGECGFASALGS
Sbjct: 17  PNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGS 57

Query: 463 522
           
Sbjct: 77  57

BLAST of MU56724 vs. TrEMBL
Match: A0A0A0K7W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290500 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 9.4e-03
Identity = 22/23 (95.65%), Postives = 23/23 (100.00%), Query Frame = 3

Query: 354 MVRFKNRYMVFEVLLDPNKNLKT 413
           MVRFKNRYMVFEVLLDPNK+LKT
Sbjct: 1   MVRFKNRYMVFEVLLDPNKDLKT 23

Query: 414 423
           
Sbjct: 61  23


HSP 2 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 1

Query: 424 DPIIITQYNVSKAIKDSILLNFGECGFASALGS 483
           DPIIITQYNVSKAIKDSIL+NFGECG AS+LGS
Sbjct: 25  DPIIITQYNVSKAIKDSILVNFGECGLASSLGS 57

Query: 484 523
           
Sbjct: 85  57

BLAST of MU56724 vs. TrEMBL
Match: B9IDE0_POPTR (Ribonuclease P family protein OS=Populus trichocarpa GN=POPTR_0015s00340g PE=4 SV=1)

HSP 1 Score: 37.0 bits (84), Expect = 2.8e+01
Identity = 16/21 (76.19%), Postives = 18/21 (85.71%), Query Frame = 3

Query: 354 MVRFKNRYMVFEVLLDPNKNL 413
           MV FKNRYMV EV LDPN++L
Sbjct: 1   MVGFKNRYMVMEVFLDPNRDL 21

Query: 414 417
           
Sbjct: 61  21


HSP 2 Score: 63.5 bits (153), Expect = 2.8e-07
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 1

Query: 424 DPIIITQYNVSKAIKDSILLNFGECGFASALGS 483
           DPI+ITQYNVSKAIKDSIL+NFGECG AS+LGS
Sbjct: 25  DPIVITQYNVSKAIKDSILVNFGECGLASSLGS 57

Query: 484 523
           
Sbjct: 85  57

BLAST of MU56724 vs. TrEMBL
Match: A9P9B9_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 37.0 bits (84), Expect = 2.8e+01
Identity = 16/21 (76.19%), Postives = 18/21 (85.71%), Query Frame = 3

Query: 354 MVRFKNRYMVFEVLLDPNKNL 413
           MV FKNRYMV EV LDPN++L
Sbjct: 1   MVGFKNRYMVMEVFLDPNRDL 21

Query: 414 417
           
Sbjct: 61  21


HSP 2 Score: 63.2 bits (152), Expect = 3.7e-07
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1

Query: 361 GLKTDTWCLKFSWIPIKTLK-HDPIIITQYNVSKAIKDSILLNFGECGFASALGS 420
           G K     L+    P K LK  DP+I+TQ+NVSKA+KDSIL+NFGECG AS+LGS
Sbjct: 3   GFKNRYMVLEIFLDPNKDLKVDDPVIVTQFNVSKAMKDSILVNFGECGLASSLGS 57

Query: 421 480
           
Sbjct: 63  57

Query: 481 523
           
Sbjct: 123 57

BLAST of MU56724 vs. TrEMBL
Match: A0A0J8CS50_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g050570 PE=4 SV=1)

HSP 1 Score: 39.7 bits (91), Expect = 4.4e+00
Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 3

Query: 354 MVRFKNRYMVFEVLLDPNKNLK 413
           MV FKNRYMV E+ LDPNK+LK
Sbjct: 1   MVGFKNRYMVLEIFLDPNKDLK 22

Query: 414 420
           
Sbjct: 61  22


HSP 2 Score: 62.0 bits (149), Expect = 8.3e-07
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 1

Query: 409 KTLKHDPIIITQYNVSKAIKDSILLNFGECGFASALGS 468
           + L  DPI++TQ+N+SKAIKDSIL+NFGECG AS+LGS
Sbjct: 20  ENLGDDPIVVTQFNISKAIKDSILVNFGECGLASSLGS 57

Query: 469 523
           
Sbjct: 80  57

BLAST of MU56724 vs. TAIR10
Match: AT1G04635.1 (AT1G04635.1 ribonuclease P family protein / Rpp14 family protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-08
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 1

Query: 427 PIIITQYNVSKAIKDSILLNFGECGFASALGS 486
           PII+TQ+N+SKAIKDSIL+NFGECG  S+LGS
Sbjct: 27  PIILTQFNLSKAIKDSILVNFGECGLGSSLGS 58

Query: 487 523
           
Sbjct: 87  58


HSP 2 Score: 35.0 bits (79), Expect = 5.4e-02
Identity = 15/21 (71.43%), Postives = 16/21 (76.19%), Query Frame = 3

Query: 354 MVRFKNRYMVFEVLLDPNKNL 413
           MV FKNRYM+ EV LDP+K+L
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDL 21

Query: 414 417
           
Sbjct: 61  21

BLAST of MU56724 vs. NCBI nr
Match: gi|659123073|ref|XP_008461474.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 2.0e-09
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 1

Query: 403 PIKTLK-HDPIIITQYNVSKAIKDSILLNFGECGFASALGS 462
           P K LK  DPIIITQYNVSKAIKDSILLNFGECGFASALGS
Sbjct: 17  PNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGS 57

Query: 463 522
           
Sbjct: 77  57

BLAST of MU56724 vs. NCBI nr
Match: gi|700189194|gb|KGN44427.1| (hypothetical protein Csa_7G290500 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 2.6e-09
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 1

Query: 403 PIKTLK-HDPIIITQYNVSKAIKDSILLNFGECGFASALGS 462
           P K LK  DPIIITQYNVSKAIKDSILLNFGECGFASALGS
Sbjct: 17  PNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGS 57

Query: 463 522
           
Sbjct: 77  57

BLAST of MU56724 vs. NCBI nr
Match: gi|449443879|ref|XP_004139703.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 2.6e-09
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 1

Query: 403 PIKTLK-HDPIIITQYNVSKAIKDSILLNFGECGFASALGS 462
           P K LK  DPIIITQYNVSKAIKDSILLNFGECGFASALGS
Sbjct: 17  PNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGS 57

Query: 463 522
           
Sbjct: 77  57

BLAST of MU56724 vs. NCBI nr
Match: gi|1009127821|ref|XP_015880898.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Ziziphus jujuba])

HSP 1 Score: 64.3 bits (155), Expect = 2.4e-07
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 1

Query: 409 KTLKHDPIIITQYNVSKAIKDSILLNFGECGFASALGS 468
           +T+ +DPII+T YNV+KAIKDSILLNFGECG AS+LGS
Sbjct: 20  ETVTNDPIILTSYNVTKAIKDSILLNFGECGLASSLGS 57

Query: 469 523
           
Sbjct: 80  57

BLAST of MU56724 vs. NCBI nr
Match: gi|731321302|ref|XP_010671279.1| (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 64.3 bits (155), Expect = 2.4e-07
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1

Query: 361 GLKTDTWCLKFSWIPIKTLK-HDPIIITQYNVSKAIKDSILLNFGECGFASALGS 420
           G K     L+    P K LK  DP+I+TQ+NVSKA+KDSIL+NFGECG AS+LGS
Sbjct: 3   GFKNRYMVLEIFLDPNKDLKVDDPVIVTQFNVSKAMKDSILVNFGECGLASSLGS 57

Query: 421 480
           
Sbjct: 63  57

Query: 481 523
           
Sbjct: 123 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
POP5_ARATH3.1e-0778.13Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1... [more]
Match NameE-valueIdentityDescription
A0A0A0K7W3_CUCSA3.0e-0990.24Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290500 PE=4 SV=1[more]
A0A0A0K7W3_CUCSA9.4e-0395.65Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290500 PE=4 SV=1[more]
B9IDE0_POPTR2.8e+0176.19Ribonuclease P family protein OS=Populus trichocarpa GN=POPTR_0015s00340g PE=4 S... [more]
A9P9B9_POPTR2.8e+0176.19Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1[more]
A0A0J8CS50_BETVU4.4e+0077.27Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g050570 PE=4 S... [more]
Match NameE-valueIdentityDescription
AT1G04635.11.8e-0878.13 ribonuclease P family protein / Rpp14 family protein[more]
Match NameE-valueIdentityDescription
gi|659123073|ref|XP_008461474.1|2.0e-0990.24PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis melo][more]
gi|700189194|gb|KGN44427.1|2.6e-0990.24hypothetical protein Csa_7G290500 [Cucumis sativus][more]
gi|449443879|ref|XP_004139703.1|2.6e-0990.24PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus][more]
gi|1009127821|ref|XP_015880898.1|2.4e-0776.32PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Ziziphus jujuba][more]
gi|731321302|ref|XP_010671279.1|2.4e-0760.00PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Beta vulgaris subsp... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
MELO3C023673MELO3C023673gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
A28A06A28A06EST