MELO3C023226 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023226
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Endonuclease MutS2
Location	chr11 : 367413 .. 369054 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTCAGCACAGCCCCTACCTCCACATCCACAAGGTTCTTCAAATTTCTGTTATTTCTTCGATTTTGTTTTTGAATCTTTTTGTTATGAGACTCTACTGATTCGTTTTTTAAGAAAAGGGGGTAATCGCAATGGTGGACATCGAGGAGGAAAAGGGAGGAGATAAGTTAAACGGTGTTTCTAGTTCGAGTAGTTTTTCGGGCAAATTGGTACACAAGTACAGAGAAATCAAAGAGAATGCAGAAAAATATCCTTATGTATGGGGATCATACATTATTGTCTATGGCGGAATGTTTCTTTGGGCTGGGTATAGATGGAGAAAGCTTCGGAAGACGGAGGACAGAGTACGTATTTTACAAGAGAAGCTTCGACAACATTATGAAGCAGAACAATCATCCATCAAACAATCAGCAAATTCAGTTGATAAAAATTCAACTCCTTCCAAGCAGTAGCCAGATTTTGAATACGTTCTTCTTCTTCTAAAGATATTGGTTAGATTTTGTATCTCATTTGTTCCGCTGTTAGGTTTTGATTTTGTTTTAATTTAACAGGGATCCCATTTCCATTGATGACAAGTACACTGCTCTGTTGTTGTTCAAAATCAATTCTGCAATGCAAATTTAGGAGATAAAAGAATAATGTTTTACAATGACTGGAATGCTAGGTTGCGTTCTTAGTTTTCCACTGATAATACAAGGAAACCATTTGCTCAAACGTAATACGATTTGAGTGATTGAGGCTTTGTTTCTCTTTATGGGCTGTAACTTTTTCAAAGTTCTATCTGCTAGTTCTTCTGTTTGTCATTTAAGTTGATTTAGTTGTTTGGCTTTCTTAGTGTTGTTAGAGAAAATAATATCATTTCAGAGCTCTGAATTAATGTTGCTTTCATTGGTTAATGATGAAGTTAGTAGAGGAATACTTTTTGGATTTTATTGTATCATATGATGAACTGCTGGAATTGTTTTTCTTTGGTTATTGACAAGTTTTAGGAAGAGCTGTGTCTGAA

mRNA sequence

ATTTCAGCACAGCCCCTACCTCCACATCCACAAGGGGGTAATCGCAATGGTGGACATCGAGGAGGAAAAGGGAGGAGATAAGTTAAACGGTGTTTCTAGTTCGAGTAGTTTTTCGGGCAAATTGGTACACAAGTACAGAGAAATCAAAGAGAATGCAGAAAAATATCCTTATGTATGGGGATCATACATTATTGTCTATGGCGGAATGTTTCTTTGGGCTGGGTATAGATGGAGAAAGCTTCGGAAGACGGAGGACAGAGTACGTATTTTACAAGAGAAGCTTCGACAACATTATGAAGCAGAACAATCATCCATCAAACAATCAGCAAATTCAGTTGATAAAAATTCAACTCCTTCCAAGCAGTAGCCAGATTTTGAATACGTTCTTCTTCTTCTAAAGATATTGGTTAGATTTTGTATCTCATTTGTTCCGCTGTTAGGTTTTGATTTTGTTTTAATTTAACAGGGATCCCATTTCCATTGATGACAAGTACACTGCTCTGTTGTTGTTCAAAATCAATTCTGCAATGCAAATTTAGGAGATAAAAGAATAATGTTTTACAATGACTGGAATGCTAGGTTGCGTTCTTAGTTTTCCACTGATAATACAAGGAAACCATTTGCTCAAACGTAATACGATTTGAGTGATTGAGGCTTTGTTTCTCTTTATGGGCTGTAACTTTTTCAAAGTTCTATCTGCTAGTTCTTCTGTTTGTCATTTAAGTTGATTTAGTTGTTTGGCTTTCTTAGTGTTGTTAGAGAAAATAATATCATTTCAGAGCTCTGAATTAATGTTGCTTTCATTGGTTAATGATGAAGTTAGTAGAGGAATACTTTTTGGATTTTATTGTATCATATGATGAACTGCTGGAATTGTTTTTCTTTGGTTATTGACAAGTTTTAGGAAGAGCTGTGTCTGAA

Coding sequence (CDS)

ATGGTGGACATCGAGGAGGAAAAGGGAGGAGATAAGTTAAACGGTGTTTCTAGTTCGAGTAGTTTTTCGGGCAAATTGGTACACAAGTACAGAGAAATCAAAGAGAATGCAGAAAAATATCCTTATGTATGGGGATCATACATTATTGTCTATGGCGGAATGTTTCTTTGGGCTGGGTATAGATGGAGAAAGCTTCGGAAGACGGAGGACAGAGTACGTATTTTACAAGAGAAGCTTCGACAACATTATGAAGCAGAACAATCATCCATCAAACAATCAGCAAATTCAGTTGATAAAAATTCAACTCCTTCCAAGCAGTAG

Homology

[Close]

BLAST of MELO3C023226 vs. TrEMBL
Match: M5X726_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019061mg PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-23
Identity = 53/86 (61.63%), Postives = 68/86 (79.07%), Query Frame = 1


Query: 6  EEKGGDKLNGVSSSSS--FSGKLVHKYREIKENAEKYPYVWGSYIIVYGGMFLWAGYRWR 65
          EE+G +K    S+ ++    G +V KYR+IKE+AE YPYVWGSYI+VYGG+ LW  YRWR
Sbjct: 4  EEQGEEKQQTTSTQAAAGLGGAVVEKYRQIKEHAETYPYVWGSYIVVYGGLALWTAYRWR 63

Query: 66 KLRKTEDRVRILQEKLRQHYEAEQSS 90
          KLRKTEDRVR LQ++LR+HY AE++S
Sbjct: 64 KLRKTEDRVRALQDRLRKHYAAEEAS 89

[Close]

BLAST of MELO3C023226 vs. TrEMBL
Match: K4C6E5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.6e-21
Identity = 51/101 (50.50%), Postives = 76/101 (75.25%), Query Frame = 1


Query: 4   IEEEKGGDKLNGVSSSSSFSGKLVHKYREIKENAEKYPYVWGSYIIVYGGMFLWAGYRWR 63
           IE     DK +   S ++++GK+  +Y+++KENAE YPYVWGSY +VYGG+ LW  YRWR
Sbjct: 35  IEPPTTVDKQSESYSYTTWAGKIQEQYQKVKENAETYPYVWGSYTVVYGGLGLWFAYRWR 94

Query: 64  KLRKTEDRVRILQEKLRQHYEAEQ---SSIKQSANSVDKNS 102
           +LRKTEDRVR+LQ++LR+  +AE+   SS+ ++ +S DK++
Sbjct: 95  RLRKTEDRVRVLQDRLRKLVQAEESTSSSVTKAPSSSDKST 135

[Close]

BLAST of MELO3C023226 vs. TrEMBL
Match: A0A068V1A0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041093001 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.7e-21
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 1


Query: 5   EEEKGGDKLNGVSSSSS--FSGKLVHKYREIKENAEKYPYVWGSYIIVYGGMFLWAGYRW 64
           E +  GD     ++ +   + G +  +YR IKENAE YPYVWGSYI+VYGG  LW  YRW
Sbjct: 9   EHQHSGDNQQAATNQADVGWMGAIQQQYRRIKENAETYPYVWGSYIVVYGGFGLWFAYRW 68

Query: 65  RKLRKTEDRVRILQEKLRQHYEAEQSSIKQSANS 97
           RKLR+TEDRVR+LQE+LR+  EAE+S+  + A S
Sbjct: 69  RKLRRTEDRVRVLQERLRKLVEAEESASSKVAES 102

[Close]

BLAST of MELO3C023226 vs. TrEMBL
Match: C6T4K8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G170600 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.7e-21
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 1


Query: 17  SSSSSFSGKLVHKYREIKENAEKYPYVWGSYIIVYGGMFLWAGYRWRKLRKTEDRVRILQ 76
           S++  F   L  +Y ++KE+AE YPYVW SYI+VYGG  LW  YRWRKLRKTEDRV+ LQ
Sbjct: 28  STAMGFKDSLEKQYLKVKEHAETYPYVWASYIVVYGGFALWTTYRWRKLRKTEDRVKTLQ 87

Query: 77  EKLRQHYEAEQSSIKQSANSVDKNSTPS 105
           E+LR+H EAE+SS   S   V+K ST S
Sbjct: 88  ERLRKHVEAEESS--SSTKVVEKGSTSS 113

[Close]

BLAST of MELO3C023226 vs. TrEMBL
Match: A0A0B2QJS5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_049223 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.7e-21
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 1


Query: 17  SSSSSFSGKLVHKYREIKENAEKYPYVWGSYIIVYGGMFLWAGYRWRKLRKTEDRVRILQ 76
           S++  F   L  +Y ++KE+AE YPYVW SYI+VYGG  LW  YRWRKLRKTEDRV+ LQ
Sbjct: 28  STAMGFKDSLEKQYLKVKEHAETYPYVWASYIVVYGGFALWTTYRWRKLRKTEDRVKTLQ 87

Query: 77  EKLRQHYEAEQSSIKQSANSVDKNSTPS 105
           E+LR+H EAE+SS   S   V+K ST S
Sbjct: 88  ERLRKHVEAEESS--SSTKVVEKGSTSS 113

[Close]

BLAST of MELO3C023226 vs. TAIR10
Match: AT5G09270.1 (AT5G09270.1 unknown protein)

HSP 1 Score: 106.7 bits (265), Expect = 9.1e-24
Identity = 50/88 (56.82%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 22  FSGKLVHKYREIKENAEKYPYVWGSYIIVYGGMFLWAGYRWRKLRKTEDRVRILQEKLRQ 81
           F G +  +Y++++++AE YPYVWGSY +VYGG+FLW  YRWRKLR+TEDRVR LQ KLR+
Sbjct: 22  FVGAIEEQYKKLRDHAEAYPYVWGSYTVVYGGLFLWTAYRWRKLRRTEDRVRGLQTKLRK 81

Query: 82  HYEAEQSSI--KQSANSVDKNST-PSKQ 107
             E EQ+++   +SA SVDK+S+ P K+
Sbjct: 82  LVENEQAAVTASKSAQSVDKSSSIPDKK 109

[Close]

BLAST of MELO3C023226 vs. NCBI nr
Match: gi|659121909|ref|XP_008460875.1| (PREDICTED: uncharacterized protein LOC103499620 [Cucumis melo])

HSP 1 Score: 218.0 bits (554), Expect = 7.9e-54
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


Query: 1   MVDIEEEKGGDKLNGVSSSSSFSGKLVHKYREIKENAEKYPYVWGSYIIVYGGMFLWAGY 60
           MVDIEEEKGGDKLNGVSSSSSFSGKLVHKYREIKENAEKYPYVWGSYIIVYGGMFLWAGY
Sbjct: 1   MVDIEEEKGGDKLNGVSSSSSFSGKLVHKYREIKENAEKYPYVWGSYIIVYGGMFLWAGY 60

Query: 61  RWRKLRKTEDRVRILQEKLRQHYEAEQSSIKQSANSVDKNSTPSKQ 107
           RWRKLRKTEDRVRILQEKLRQHYEAEQSSIKQSANSVDKNSTPSKQ
Sbjct: 61  RWRKLRKTEDRVRILQEKLRQHYEAEQSSIKQSANSVDKNSTPSKQ 106

[Close]

BLAST of MELO3C023226 vs. NCBI nr
Match: gi|449459226|ref|XP_004147347.1| (PREDICTED: uncharacterized protein LOC101213780 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 1.5e-47
Identity = 93/106 (87.74%), Postives = 100/106 (94.34%), Query Frame = 1


Query: 1   MVDIEEEKGGDKLNGVSSSSSFSGKLVHKYREIKENAEKYPYVWGSYIIVYGGMFLWAGY 60
           MVD+EEE G DKLNGV+SSS F GKL HKYREIKENAEKYPYVWGSYI+VYGG+FLWAGY
Sbjct: 1   MVDVEEENGEDKLNGVASSSGFFGKLEHKYREIKENAEKYPYVWGSYIVVYGGIFLWAGY 60

Query: 61  RWRKLRKTEDRVRILQEKLRQHYEAEQSSIKQSANSVDKNSTPSKQ 107
           RWRKLRKTEDRVRILQEKLR+HYEA++SSIKQSANSVDK STPSKQ
Sbjct: 61  RWRKLRKTEDRVRILQEKLRKHYEAQESSIKQSANSVDKTSTPSKQ 106

[Close]

BLAST of MELO3C023226 vs. NCBI nr
Match: gi|645248617|ref|XP_008230376.1| (PREDICTED: uncharacterized protein LOC103329656 [Prunus mume])

HSP 1 Score: 116.7 bits (291), Expect = 2.5e-23
Identity = 53/86 (61.63%), Postives = 68/86 (79.07%), Query Frame = 1


Query: 6  EEKGGDKLNGVSSSSS--FSGKLVHKYREIKENAEKYPYVWGSYIIVYGGMFLWAGYRWR 65
          EE+G +K    S+ ++    G +V KYR+IKE+AE YPYVWGSYI+VYGG+ LW  YRWR
Sbjct: 4  EEQGEEKQQTTSTQAAAGLGGAVVEKYRQIKEHAETYPYVWGSYIVVYGGLALWTAYRWR 63

Query: 66 KLRKTEDRVRILQEKLRQHYEAEQSS 90
          KLRKTEDRVR LQ++LR+HY AE++S
Sbjct: 64 KLRKTEDRVRALQDRLRKHYAAEEAS 89

[Close]

BLAST of MELO3C023226 vs. NCBI nr
Match: gi|595946307|ref|XP_007216134.1| (hypothetical protein PRUPE_ppa019061mg, partial [Prunus persica])

HSP 1 Score: 116.7 bits (291), Expect = 2.5e-23
Identity = 53/86 (61.63%), Postives = 68/86 (79.07%), Query Frame = 1


Query: 6  EEKGGDKLNGVSSSSS--FSGKLVHKYREIKENAEKYPYVWGSYIIVYGGMFLWAGYRWR 65
          EE+G +K    S+ ++    G +V KYR+IKE+AE YPYVWGSYI+VYGG+ LW  YRWR
Sbjct: 4  EEQGEEKQQTTSTQAAAGLGGAVVEKYRQIKEHAETYPYVWGSYIVVYGGLALWTAYRWR 63

Query: 66 KLRKTEDRVRILQEKLRQHYEAEQSS 90
          KLRKTEDRVR LQ++LR+HY AE++S
Sbjct: 64 KLRKTEDRVRALQDRLRKHYAAEEAS 89

[Close]

BLAST of MELO3C023226 vs. NCBI nr
Match: gi|694332797|ref|XP_009357019.1| (PREDICTED: uncharacterized protein LOC103947787 [Pyrus x bretschneideri])

HSP 1 Score: 111.7 bits (278), Expect = 8.0e-22
Identity = 54/94 (57.45%), Postives = 67/94 (71.28%), Query Frame = 1


Query: 6  EEKGGDKLNGVS--SSSSFSGKLVHKYREIKENAEKYPYVWGSYIIVYGGMFLWAGYRWR 65
          EEKG +     S  +++   G +  KYR+IKE+AE YPYVW SYI+VYGG  LW  YRWR
Sbjct: 4  EEKGEELQQTTSPQAAAGLRGAVEAKYRQIKEHAETYPYVWASYIVVYGGFALWGTYRWR 63

Query: 66 KLRKTEDRVRILQEKLRQHYEAEQSSIKQSANSV 98
          KLRKTEDRVR LQE+LR+HY AE++S   S  +V
Sbjct: 64 KLRKTEDRVRALQERLRKHYAAEEASASSSTPAV 97

The following BLAST results are available for this feature:

BLAST of MELO3C023226 vs. TrEMBL


Match Name	E-value	Identity	Description
M5X726_PRUPE	1.7e-23	61.63	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019061mg PE=4 S...	[more]
K4C6E5_SOLLC	3.6e-21	50.50	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A068V1A0_COFCA	4.7e-21	54.26	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041093001 PE=4 SV=1	[more]
C6T4K8_SOYBN	4.7e-21	59.09	Uncharacterized protein OS=Glycine max GN=GLYMA_18G170600 PE=2 SV=1	[more]
A0A0B2QJS5_GLYSO	4.7e-21	59.09	Uncharacterized protein OS=Glycine soja GN=glysoja_049223 PE=4 SV=1	[more]

BLAST of MELO3C023226 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09270.1	9.1e-24	56.82	unknown protein	[more]

BLAST of MELO3C023226 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121909\|ref\|XP_008460875.1\|	7.9e-54	100.00	PREDICTED: uncharacterized protein LOC103499620 [Cucumis melo]	[more]
gi\|449459226\|ref\|XP_004147347.1\|	1.5e-47	87.74	PREDICTED: uncharacterized protein LOC101213780 [Cucumis sativus]	[more]
gi\|645248617\|ref\|XP_008230376.1\|	2.5e-23	61.63	PREDICTED: uncharacterized protein LOC103329656 [Prunus mume]	[more]
gi\|595946307\|ref\|XP_007216134.1\|	2.5e-23	61.63	hypothetical protein PRUPE_ppa019061mg, partial [Prunus persica]	[more]
gi\|694332797\|ref\|XP_009357019.1\|	8.0e-22	57.45	PREDICTED: uncharacterized protein LOC103947787 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009536	plastid
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU47522	melon EST collection version 4.0	transcribed_cluster
MU62102	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023226T2	MELO3C023226T2	mRNA
MELO3C023226T1	MELO3C023226T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU62102	MU62102	transcribed_cluster
MU47522	MU47522	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C023226	Cla007824	Watermelon (97103) v1	mewmB123
MELO3C023226	ClCG02G000360	Watermelon (Charleston Gray)	mewcgB091
MELO3C023226	Cla97C02G026630	Watermelon (97103) v2	mewmbB093
MELO3C023226	Bhi10G001351	Wax gourd	mewgoB131
MELO3C023226	CmaCh02G006450	Cucurbita maxima (Rimu)	cmameB550
MELO3C023226	CmoCh02G006480	Cucurbita moschata (Rifu)	cmomeB540
MELO3C023226	Lsi10G007510	Bottle gourd (USVL1VR-Ls)	lsimeB056
MELO3C023226	Carg11710	Silver-seed gourd	carmeB1026
MELO3C023226	CsaV3_2G019480	Cucumber (Chinese Long) v3	cucmeB104

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023226	Wild cucumber (PI 183967)	cpimeB101
MELO3C023226	Cucumber (Chinese Long) v2	cumeB101
MELO3C023226	Cucurbita pepo (Zucchini)	cpemeB261
MELO3C023226	Cucurbita pepo (Zucchini)	cpemeB268
MELO3C023226	Cucurbita pepo (Zucchini)	cpemeB657
MELO3C023226	Cucumber (Gy14) v2	cgybmeB086
MELO3C023226	Silver-seed gourd	carmeB0713
MELO3C023226	Cucumber (Gy14) v1	cgymeB386
MELO3C023226	Cucurbita maxima (Rimu)	cmameB491
MELO3C023226	Cucurbita moschata (Rifu)	cmomeB486
MELO3C023226	Cucurbita moschata (Rifu)	cmomeB492