Carg11710 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11710
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein
Location	Cucurbita_argyrosperma_scaffold_035 : 960110 .. 961039 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATTGAAATCTAATATTGTAATTAAATCTATTTTAAAAATTCAATTACTTTTGGTCTCTGGTGTGCCCTAATTTCTTTCCGTTTCAATTCAGCCCTACTCTCTGTCGATCGGCTCTTCCTTCGTATATACATTCTTTCTTCAGCTCTCCCGAATCCGCCGGAGCCCTCCAACCGGCGACCGGCGACTGAACGCTGTTGCAGCTTGCAGCCTTGAAGCCGCTGTCGTGCTCTCGACTACTTTCTTCTCCTCTTACGGTATTCTGTCTCTTTTTCTTACTTTTCAATTGATCAAATTAAAGTACGTCAACCTTCAACTCAAGTATCTACAATTTCATTTCTAGAATTCCCCGTTCATTAGCTCCTATTTATTTCTCCTTATACTCTGATCACTTCCAATTTGGTGAACATTTCAGATCTAGTTTAGTTTGTAACTTCAAACAGACATGCGGATAATTCTCTTTCTGAACTTTTGTTATGAACTTTAATTGTTTGGTTTTTGATTGTTATACTATGTTCCTTCTATTACAAATTTCAGATAACTGAGCAACTAGTAAGATCTTCATTTTATTGATTACTCGGGAATAGAAGGGGGCATGGAAACTCAGAAAAAGGAAGAAGATAATTTAACTGCTCCTGCCAGTTCCTCTGGGTTTTTGGGTAAATTGGAAGAGAAGTATAAGGAACTCAAAGAGAATGCAGAAACATATCCTTATGTGTGGGGCTCATACATTGTTGTCTATGGTGGTTTTGCGCTTTGGACTGGCTATAGATGGAGAAAGCTTCGGAAGACCGAGGATCGAGTACGTGCCCTACAGGAGAAGCTTCGACAACGTTACGAAGCCGAACAGTCTGCCAAACAATCGGCCAATTCAGTGGCATCAGTTGAAAAAGTCTCACAATCTGTTAAACAGCCTCCTTCCAATCAGTAA

mRNA sequence

TTATTGAAATCTAATATTGTAATTAAATCTATTTTAAAAATTCAATTACTTTTGGTCTCTGGTGTGCCCTAATTTCTTTCCGTTTCAATTCAGCCCTACTCTCTGTCGATCGGCTCTTCCTTCGTATATACATTCTTTCTTCAGCTCTCCCGAATCCGCCGGAGCCCTCCAACCGGCGACCGGCGACTGAACGCTGTTGCAGCTTGCAGCCTTGAAGCCGCTGTCGTGCTCTCGACTACTTTCTTCTCCTCTTACGAAGGGGGCATGGAAACTCAGAAAAAGGAAGAAGATAATTTAACTGCTCCTGCCAGTTCCTCTGGGTTTTTGGGTAAATTGGAAGAGAAGTATAAGGAACTCAAAGAGAATGCAGAAACATATCCTTATGTGTGGGGCTCATACATTGTTGTCTATGGTGGTTTTGCGCTTTGGACTGGCTATAGATGGAGAAAGCTTCGGAAGACCGAGGATCGAGTACGTGCCCTACAGGAGAAGCTTCGACAACGTTACGAAGCCGAACAGTCTGCCAAACAATCGGCCAATTCAGTGGCATCAGTTGAAAAAGTCTCACAATCTGTTAAACAGCCTCCTTCCAATCAGTAA

Coding sequence (CDS)

ATGGAAACTCAGAAAAAGGAAGAAGATAATTTAACTGCTCCTGCCAGTTCCTCTGGGTTTTTGGGTAAATTGGAAGAGAAGTATAAGGAACTCAAAGAGAATGCAGAAACATATCCTTATGTGTGGGGCTCATACATTGTTGTCTATGGTGGTTTTGCGCTTTGGACTGGCTATAGATGGAGAAAGCTTCGGAAGACCGAGGATCGAGTACGTGCCCTACAGGAGAAGCTTCGACAACGTTACGAAGCCGAACAGTCTGCCAAACAATCGGCCAATTCAGTGGCATCAGTTGAAAAAGTCTCACAATCTGTTAAACAGCCTCCTTCCAATCAGTAA

Protein sequence

METQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRWRKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ

Homology

[Close]

BLAST of Carg11710 vs. NCBI nr
Match: XP_022948157.1 (uncharacterized protein LOC111451821 [Cucurbita moschata] >XP_022948158.1 uncharacterized protein LOC111451821 [Cucurbita moschata] >XP_022948159.1 uncharacterized protein LOC111451821 [Cucurbita moschata] >XP_023534704.1 uncharacterized protein LOC111796195 [Cucurbita pepo subsp. pepo] >XP_023534706.1 uncharacterized protein LOC111796195 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.5 bits (545), Expect = 1.8e-52
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   METQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW 60
           METQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW
Sbjct: 1   METQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW 60

Query: 61  RKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ 112
           RKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ
Sbjct: 61  RKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ 111

[Close]

BLAST of Carg11710 vs. NCBI nr
Match: XP_023007268.1 (uncharacterized protein LOC111499806 [Cucurbita maxima])

HSP 1 Score: 211.1 bits (536), Expect = 2.0e-51
Identity = 109/111 (98.20%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   METQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW 60
           ME QKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW
Sbjct: 1   MEAQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW 60

Query: 61  RKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ 112
           RKLRKTEDRVR LQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ
Sbjct: 61  RKLRKTEDRVRVLQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ 111

[Close]

BLAST of Carg11710 vs. NCBI nr
Match: XP_022148881.1 (uncharacterized protein LOC111017444 [Momordica charantia])

HSP 1 Score: 171.4 bits (433), Expect = 1.7e-39
Identity = 89/111 (80.18%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 1   METQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW 60
           MET KKEED +T PA+SSGF+GKLE+KY+E+KENAETYPYVWGSYIVVYGGFALWTGYRW
Sbjct: 1   METPKKEEDEVTTPATSSGFMGKLEQKYREIKENAETYPYVWGSYIVVYGGFALWTGYRW 60

Query: 61  RKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ 112
           RKLRKTEDRVR LQEKLR+RYEAE    QSA+SVASVEK   SVKQP S +
Sbjct: 61  RKLRKTEDRVRXLQEKLRRRYEAE----QSASSVASVEKDPPSVKQPSSKE 107

[Close]

BLAST of Carg11710 vs. NCBI nr
Match: XP_004147347.1 (PREDICTED: uncharacterized protein LOC101213780 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 1.4e-28
Identity = 73/104 (70.19%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 4   QKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRWRKL 63
           ++  ED L   ASSSGF GKLE KY+E+KENAE YPYVWGSYIVVYGG  LW GYRWRKL
Sbjct: 6   EENGEDKLNGVASSSGFFGKLEHKYREIKENAEKYPYVWGSYIVVYGGIFLWAGYRWRKL 65

Query: 64  RKTEDRVRALQEKLRQRYEAEQSA-KQSANSVASVEKVSQSVKQ 107
           RKTEDRVR LQEKLR+ YEA++S+ KQSAN   SV+K S   KQ
Sbjct: 66  RKTEDRVRILQEKLRKHYEAQESSIKQSAN---SVDKTSTPSKQ 106

[Close]

BLAST of Carg11710 vs. NCBI nr
Match: XP_008460875.1 (PREDICTED: uncharacterized protein LOC103499620 [Cucumis melo] >XP_008460876.1 PREDICTED: uncharacterized protein LOC103499620 [Cucumis melo] >XP_008460877.1 PREDICTED: uncharacterized protein LOC103499620 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27
Identity = 68/92 (73.91%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 4  QKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRWRKL 63
          ++K  D L   +SSS F GKL  KY+E+KENAE YPYVWGSYI+VYGG  LW GYRWRKL
Sbjct: 6  EEKGGDKLNGVSSSSSFSGKLVHKYREIKENAEKYPYVWGSYIIVYGGMFLWAGYRWRKL 65

Query: 64 RKTEDRVRALQEKLRQRYEAEQSA-KQSANSV 95
          RKTEDRVR LQEKLRQ YEAEQS+ KQSANSV
Sbjct: 66 RKTEDRVRILQEKLRQHYEAEQSSIKQSANSV 97

[Close]

BLAST of Carg11710 vs. TAIR10
Match: AT5G09270.1 (unknown protein)

HSP 1 Score: 110.9 bits (276), Expect = 5.0e-25
Identity = 56/95 (58.95%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 8   EDNLTAPAS-SSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRWRKLRKT 67
           ED  + P+  + GF+G +EE+YK+L+++AE YPYVWGSY VVYGG  LWT YRWRKLR+T
Sbjct: 9   EDQESQPSQVAPGFVGAIEEQYKKLRDHAEAYPYVWGSYTVVYGGLFLWTAYRWRKLRRT 68

Query: 68  EDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVS 102
           EDRVR LQ KLR+  E EQ+A  ++ S  SV+K S
Sbjct: 69  EDRVRGLQTKLRKLVENEQAAVTASKSAQSVDKSS 103

[Close]

BLAST of Carg11710 vs. TrEMBL
Match: tr|A0A1S3CCY7|A0A1S3CCY7_CUCME (uncharacterized protein LOC103499620 OS=Cucumis melo OX=3656 GN=LOC103499620 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.7e-28
Identity = 68/92 (73.91%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 4  QKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRWRKL 63
          ++K  D L   +SSS F GKL  KY+E+KENAE YPYVWGSYI+VYGG  LW GYRWRKL
Sbjct: 6  EEKGGDKLNGVSSSSSFSGKLVHKYREIKENAEKYPYVWGSYIIVYGGMFLWAGYRWRKL 65

Query: 64 RKTEDRVRALQEKLRQRYEAEQSA-KQSANSV 95
          RKTEDRVR LQEKLRQ YEAEQS+ KQSANSV
Sbjct: 66 RKTEDRVRILQEKLRQHYEAEQSSIKQSANSV 97

[Close]

BLAST of Carg11710 vs. TrEMBL
Match: tr|A0A2I4HC92|A0A2I4HC92_9ROSI (uncharacterized protein LOC109015766 OS=Juglans regia OX=51240 GN=LOC109015766 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-24
Identity = 65/105 (61.90%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 4   QKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRWRKL 63
           QK EED  T  A   G+   +EE+Y+++KENAETYPYVW SYIVVYGGF LW  YRWRKL
Sbjct: 5   QKGEEDQQTTGAPVLGWRAMVEERYQKIKENAETYPYVWASYIVVYGGFGLWFTYRWRKL 64

Query: 64  RKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPP 109
           RKTEDRVR LQE+LR+  EAE    +S +S ASV+K S S  +PP
Sbjct: 65  RKTEDRVRVLQERLRKLVEAE----ESKSSAASVQKTSPSADKPP 105

[Close]

BLAST of Carg11710 vs. TrEMBL
Match: tr|A0A1S3E5T5|A0A1S3E5T5_CICAR (uncharacterized protein LOC101509617 OS=Cicer arietinum OX=3827 GN=LOC101509617 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.3e-24
Identity = 64/106 (60.38%), Postives = 80/106 (75.47%), Query Frame = 0


Query: 4   QKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRWRKL 63
           QK  ED + +  S++GF+  LE +Y+++KE+AETYPYVW SYIVVYGGF LWT YRWRKL
Sbjct: 19  QKTGEDQVVSGPSAAGFIDSLENRYQKIKEHAETYPYVWASYIVVYGGFGLWTTYRWRKL 78

Query: 64  RKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPS 110
           RKTE+RVR+LQEKLR+  EAE    +S NS   VEK S S ++ PS
Sbjct: 79  RKTENRVRSLQEKLRKLIEAE----ESGNSAKVVEKGSASSEKKPS 120

[Close]

BLAST of Carg11710 vs. TrEMBL
Match: tr|A0A2P6S3C1|A0A2P6S3C1_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0163441 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.1e-24
Identity = 63/109 (57.80%), Postives = 79/109 (72.48%), Query Frame = 0


Query: 1   METQKK-EEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYR 60
           M TQ+  EE+  TA + + GF+G +E KY+++KE+AETYPYVW SY VVYGG ALWT YR
Sbjct: 45  MATQETGEENQQTASSQAVGFIGAVEAKYRQIKEHAETYPYVWASYSVVYGGLALWTTYR 104

Query: 61  WRKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPP 109
           WRKLRKTEDRVRALQE+LR+ Y AE+ A  + +S  S    +   K PP
Sbjct: 105 WRKLRKTEDRVRALQERLRKHYAAEERASATVSSSTSRSPATPVQKVPP 153

[Close]

BLAST of Carg11710 vs. TrEMBL
Match: tr|A0A2P4ME50|A0A2P4ME50_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_35264 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 4   QKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRWRKL 63
           QK E+D      ++ G  G +EE+Y+++KENAETYPYVWGSYIVVYGGFALW  YRWRKL
Sbjct: 5   QKGEDDQQVTSTTAVGLRGMVEEQYRKIKENAETYPYVWGSYIVVYGGFALWGAYRWRKL 64

Query: 64  RKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEK 100
           R+TEDRVR LQE+LR+  E E    +SA++  SVEK
Sbjct: 65  RRTEDRVRVLQERLRKLVETE----ESASTAKSVEK 96

The following BLAST results are available for this feature:

BLAST of Carg11710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948157.1	1.8e-52	100.00	uncharacterized protein LOC111451821 [Cucurbita moschata] >XP_022948158.1 unchar...	[more]
XP_023007268.1	2.0e-51	98.20	uncharacterized protein LOC111499806 [Cucurbita maxima]	[more]
XP_022148881.1	1.7e-39	80.18	uncharacterized protein LOC111017444 [Momordica charantia]	[more]
XP_004147347.1	1.4e-28	70.19	PREDICTED: uncharacterized protein LOC101213780 [Cucumis sativus]	[more]
XP_008460875.1	1.2e-27	73.91	PREDICTED: uncharacterized protein LOC103499620 [Cucumis melo] >XP_008460876.1 P...	[more]

BLAST of Carg11710 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09270.1	5.0e-25	58.95	unknown protein	[more]

BLAST of Carg11710 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11710 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CCY7\|A0A1S3CCY7_CUCME	7.7e-28	73.91	uncharacterized protein LOC103499620 OS=Cucumis melo OX=3656 GN=LOC103499620 PE=...	[more]
tr\|A0A2I4HC92\|A0A2I4HC92_9ROSI	1.0e-24	61.90	uncharacterized protein LOC109015766 OS=Juglans regia OX=51240 GN=LOC109015766 P...	[more]
tr\|A0A1S3E5T5\|A0A1S3E5T5_CICAR	2.3e-24	60.38	uncharacterized protein LOC101509617 OS=Cicer arietinum OX=3827 GN=LOC101509617 ...	[more]
tr\|A0A2P6S3C1\|A0A2P6S3C1_ROSCH	5.1e-24	57.80	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0163441 PE=4...	[more]
tr\|A0A2P4ME50\|A0A2P4ME50_QUESU	2.5e-23	61.46	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_35264 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11710-RA	Carg11710-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 63..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..111
None	No IPR available	PANTHER	PTHR36794	FAMILY NOT NAMED	coord: 4..98

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11710	Cla007824	Watermelon (97103) v1	carwmB1056
Carg11710	MELO3C023226	Melon (DHL92) v3.5.1	carmeB1026
Carg11710	ClCG02G000360	Watermelon (Charleston Gray)	carwcgB1030
Carg11710	CmaCh02G006450	Cucurbita maxima (Rimu)	carcmaB1466
Carg11710	CmoCh02G006480	Cucurbita moschata (Rifu)	carcmoB1422
Carg11710	Lsi10G007510	Bottle gourd (USVL1VR-Ls)	carlsiB962
Carg11710	MELO3C023226.2	Melon (DHL92) v3.6.1	carmedB1039
Carg11710	CsaV3_2G019480	Cucumber (Chinese Long) v3	carcucB1102
Carg11710	Cla97C02G026630	Watermelon (97103) v2	carwmbB1117
Carg11710	Bhi10G001351	Wax gourd	carwgoB1241

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11710	Silver-seed gourd	carcarB589
Carg11710	Cucumber (Gy14) v2	carcgybB1038
Carg11710	Cucumber (Gy14) v1	carcgyB1173
Carg11710	Cucurbita maxima (Rimu)	carcmaB1464
Carg11710	Cucurbita moschata (Rifu)	carcmoB1419
Carg11710	Cucurbita pepo (Zucchini)	carcpeB1472
Carg11710	Cucurbita pepo (Zucchini)	carcpeB1476
Carg11710	Wild cucumber (PI 183967)	carcpiB1094
Carg11710	Cucumber (Chinese Long) v2	carcuB1071