Cla007824 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007824
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Os01g0861000 protein (Fragment) (AHRD V1 -- Q0JHI8_ORYSJ)
Location	Chr2 : 1655787 .. 1656104 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTGAGGAGGAAAAGGGAGAAGATAAGTTAAGTGGTGGTAGTAGTTCGAGTGGATTTTTGGGTAAATTGGAAGAAAAGTACAGAGAAATCAAAGAGAATGCAGAAACATATCCTTATGTATGGGGCTCATACATTGTTGTCTATGGCGGATTCGCTCTTTGGACTGGCTATAGATGGAGGAAGCTTCGGAAGACGGAGGACAGAGTACGCGTTTTACAGGAGAAGCTTCGACAGCGTTACGAAGCAGAACAATCCTCCGCCAAACAATCAGCAACTTCGGTTGATAAAAATGCACTTCCTTCCAAGCAGTAG

mRNA sequence

ATGGAAACTGAGGAGGAAAAGGGAGAAGATAAGTTAAGTGGTGGTAGTAGTTCGAGTGGATTTTTGGGTAAATTGGAAGAAAAGTACAGAGAAATCAAAGAGAATGCAGAAACATATCCTTATGTATGGGGCTCATACATTGTTGTCTATGGCGGATTCGCTCTTTGGACTGGCTATAGATGGAGGAAGCTTCGGAAGACGGAGGACAGAGTACGCGTTTTACAGGAGAAGCTTCGACAGCGTTACGAAGCAGAACAATCCTCCGCCAAACAATCAGCAACTTCGGTTGATAAAAATGCACTTCCTTCCAAGCAGTAG

Coding sequence (CDS)

ATGGAAACTGAGGAGGAAAAGGGAGAAGATAAGTTAAGTGGTGGTAGTAGTTCGAGTGGATTTTTGGGTAAATTGGAAGAAAAGTACAGAGAAATCAAAGAGAATGCAGAAACATATCCTTATGTATGGGGCTCATACATTGTTGTCTATGGCGGATTCGCTCTTTGGACTGGCTATAGATGGAGGAAGCTTCGGAAGACGGAGGACAGAGTACGCGTTTTACAGGAGAAGCTTCGACAGCGTTACGAAGCAGAACAATCCTCCGCCAAACAATCAGCAACTTCGGTTGATAAAAATGCACTTCCTTCCAAGCAGTAG

Protein sequence

METEEEKGEDKLSGGSSSSGFLGKLEEKYREIKENAETYPYVWGSYIVVYGGFALWTGYRWRKLRKTEDRVRVLQEKLRQRYEAEQSSAKQSATSVDKNALPSKQ

Homology

[Close]

BLAST of Cla007824 vs. TrEMBL
Match: M5X726_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019061mg PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-25
Identity = 59/87 (67.82%), Postives = 72/87 (82.76%), Query Frame = 1


Query: 5  EEKGEDKLSGGSS--SSGFLGKLEEKYREIKENAETYPYVWGSYIVVYGGFALWTGYRWR 64
          EE+GE+K    S+  ++G  G + EKYR+IKE+AETYPYVWGSYIVVYGG ALWT YRWR
Sbjct: 4  EEQGEEKQQTTSTQAAAGLGGAVVEKYRQIKEHAETYPYVWGSYIVVYGGLALWTAYRWR 63

Query: 65 KLRKTEDRVRVLQEKLRQRYEAEQSSA 90
          KLRKTEDRVR LQ++LR+ Y AE++SA
Sbjct: 64 KLRKTEDRVRALQDRLRKHYAAEEASA 90

[Close]

BLAST of Cla007824 vs. TrEMBL
Match: A0A059AJZ0_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_I00130 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.4e-25
Identity = 57/88 (64.77%), Postives = 71/88 (80.68%), Query Frame = 1


Query: 6   EKGEDKLSGGSSSSGFLGKLEEKYREIKENAETYPYVWGSYIVVYGGFALWTGYRWRKLR 65
           E+ EDK +   S+ G    +EE+YR+IKENAETYPYVW SYI+VYGGF LWT YRWRKLR
Sbjct: 66  EQNEDKQASSPSAVGLKEMVEEQYRKIKENAETYPYVWASYILVYGGFTLWTTYRWRKLR 125

Query: 66  KTEDRVRVLQEKLRQRYEAEQSSAKQSA 94
           +TEDRVRVLQE+LR+  EAE+S++  S+
Sbjct: 126 RTEDRVRVLQERLRKLVEAEESASPVSS 153

[Close]

BLAST of Cla007824 vs. TrEMBL
Match: A0A068V1A0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041093001 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.9e-25
Identity = 58/102 (56.86%), Postives = 77/102 (75.49%), Query Frame = 1


Query: 1   METEEEKGEDKLSGGSSSS-------GFLGKLEEKYREIKENAETYPYVWGSYIVVYGGF 60
           M T+ ++ E + SG +  +       G++G ++++YR IKENAETYPYVWGSYIVVYGGF
Sbjct: 1   MATQGKEEEHQHSGDNQQAATNQADVGWMGAIQQQYRRIKENAETYPYVWGSYIVVYGGF 60

Query: 61  ALWTGYRWRKLRKTEDRVRVLQEKLRQRYEAEQSSAKQSATS 96
            LW  YRWRKLR+TEDRVRVLQE+LR+  EAE+S++ + A S
Sbjct: 61  GLWFAYRWRKLRRTEDRVRVLQERLRKLVEAEESASSKVAES 102

[Close]

BLAST of Cla007824 vs. TrEMBL
Match: V4V0T1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003637mg PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-24
Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 1


Query: 3  TEEEKGEDKLSGGSSSSGFLGKLEEKYREIKENAETYPYVWGSYIVVYGGFALWTGYRWR 62
          T E+K ED  S  SS +  L  + E+YR+I+E+AETYPYVW SY+VVYGGF LW  YRWR
Sbjct: 2  TTEQKREDDQSTTSSPAVGLNGIVEQYRKIREHAETYPYVWASYLVVYGGFGLWATYRWR 61

Query: 63 KLRKTEDRVRVLQEKLRQRYEAEQSSAKQSATSVDK 99
          KLRKTEDRVR LQE+LR+  + E+S+   +AT V+K
Sbjct: 62 KLRKTEDRVRALQERLRKLVDTEESAGSATATPVEK 97

[Close]

BLAST of Cla007824 vs. TrEMBL
Match: A0A0J8CPW6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g078810 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.4e-24
Identity = 57/101 (56.44%), Postives = 75/101 (74.26%), Query Frame = 1


Query: 1   METEEE-KGEDKLSGGSSSSGFLGKLEEKYREIKENAETYPYVWGSYIVVYGGFALWTGY 60
           M TE++ +G ++ S    + GF+G +E KYRE+KE+AE YPYVWGSY+VVYGGF +W  Y
Sbjct: 1   MATEQKAEGTEQTSSSDPAIGFVGNIEAKYRELKEHAEAYPYVWGSYLVVYGGFGMWFAY 60

Query: 61  RWRKLRKTEDRVRVLQEKLRQRYEAEQSSAKQSATS--VDK 99
           RWRKLR+TE RVR LQE+LRQ  + E+S+   S+ S  VDK
Sbjct: 61  RWRKLRRTESRVRGLQERLRQLAQTEESANSSSSASAKVDK 101

[Close]

BLAST of Cla007824 vs. NCBI nr
Match: gi|449459226|ref|XP_004147347.1| (PREDICTED: uncharacterized protein LOC101213780 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-40
Identity = 82/105 (78.10%), Postives = 91/105 (86.67%), Query Frame = 1


Query: 1   METEEEKGEDKLSGGSSSSGFLGKLEEKYREIKENAETYPYVWGSYIVVYGGFALWTGYR 60
           ++ EEE GEDKL+G +SSSGF GKLE KYREIKENAE YPYVWGSYIVVYGG  LW GYR
Sbjct: 2   VDVEEENGEDKLNGVASSSGFFGKLEHKYREIKENAEKYPYVWGSYIVVYGGIFLWAGYR 61

Query: 61  WRKLRKTEDRVRVLQEKLRQRYEAEQSSAKQSATSVDKNALPSKQ 106
           WRKLRKTEDRVR+LQEKLR+ YEA++SS KQSA SVDK + PSKQ
Sbjct: 62  WRKLRKTEDRVRILQEKLRKHYEAQESSIKQSANSVDKTSTPSKQ 106

[Close]

BLAST of Cla007824 vs. NCBI nr
Match: gi|659121909|ref|XP_008460875.1| (PREDICTED: uncharacterized protein LOC103499620 [Cucumis melo])

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-40
Identity = 84/105 (80.00%), Postives = 90/105 (85.71%), Query Frame = 1


Query: 1   METEEEKGEDKLSGGSSSSGFLGKLEEKYREIKENAETYPYVWGSYIVVYGGFALWTGYR 60
           ++ EEEKG DKL+G SSSS F GKL  KYREIKENAE YPYVWGSYI+VYGG  LW GYR
Sbjct: 2   VDIEEEKGGDKLNGVSSSSSFSGKLVHKYREIKENAEKYPYVWGSYIIVYGGMFLWAGYR 61

Query: 61  WRKLRKTEDRVRVLQEKLRQRYEAEQSSAKQSATSVDKNALPSKQ 106
           WRKLRKTEDRVR+LQEKLRQ YEAEQSS KQSA SVDKN+ PSKQ
Sbjct: 62  WRKLRKTEDRVRILQEKLRQHYEAEQSSIKQSANSVDKNSTPSKQ 106

[Close]

BLAST of Cla007824 vs. NCBI nr
Match: gi|1009137074|ref|XP_015885858.1| (PREDICTED: uncharacterized protein LOC107421190 [Ziziphus jujuba])

HSP 1 Score: 129.0 bits (323), Expect = 4.8e-27
Identity = 63/98 (64.29%), Postives = 76/98 (77.55%), Query Frame = 1


Query: 8   GEDKLSGGSSSSGFLGKLEEKYREIKENAETYPYVWGSYIVVYGGFALWTGYRWRKLRKT 67
           G+D+ +  +   G  G LEE+YR+IKENAETYPYVW SYIVVYGGFALWT YRWRKLRKT
Sbjct: 7   GDDQQTTSAQDVGLRGMLEEQYRKIKENAETYPYVWASYIVVYGGFALWTTYRWRKLRKT 66

Query: 68  EDRVRVLQEKLRQRYEAEQSSAKQSATSVDKNALPSKQ 106
           EDRVR LQE+LR+  EAE+S+   SA S +K   P+K+
Sbjct: 67  EDRVRTLQERLRKLVEAEESTT-SSAASAEKVPPPAKK 103

[Close]

BLAST of Cla007824 vs. NCBI nr
Match: gi|470136757|ref|XP_004304150.1| (PREDICTED: uncharacterized protein LOC101295836 [Fragaria vesca subsp. vesca])

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-26
Identity = 63/110 (57.27%), Postives = 79/110 (71.82%), Query Frame = 1


Query: 1   METEEEKGEDKLSGGSSSSGFLGKLEEKYREIKENAETYPYVWGSYIVVYGGFALWTGYR 60
           M T++   E++ +  S + GF+G +E KYREIKE+AETYPYVW SY VVYGG ALWT YR
Sbjct: 1   MATQDTGEENQQTENSQAGGFIGAVEAKYREIKEHAETYPYVWASYGVVYGGLALWTTYR 60

Query: 61  WRKLRKTEDRVRVLQEKLRQRYEAEQ--------SSAKQSATSVDKNALP 103
           WRKLRKTE+RVR LQE+LR+ YEAE+        S+++  AT V K A P
Sbjct: 61  WRKLRKTENRVRALQERLRKHYEAEERASATISSSTSRNPATPVQKPATP 110

[Close]

BLAST of Cla007824 vs. NCBI nr
Match: gi|502125585|ref|XP_004498984.1| (PREDICTED: uncharacterized protein LOC101509617 [Cicer arietinum])

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-26
Identity = 61/101 (60.40%), Postives = 79/101 (78.22%), Query Frame = 1


Query: 5   EEKGEDKLSGGSSSSGFLGKLEEKYREIKENAETYPYVWGSYIVVYGGFALWTGYRWRKL 64
           ++ GED++  G S++GF+  LE +Y++IKE+AETYPYVW SYIVVYGGF LWT YRWRKL
Sbjct: 19  QKTGEDQVVSGPSAAGFIDSLENRYQKIKEHAETYPYVWASYIVVYGGFGLWTTYRWRKL 78

Query: 65  RKTEDRVRVLQEKLRQRYEAEQSSAKQSATSVDKNALPSKQ 106
           RKTE+RVR LQEKLR+  EAE+S    SA  V+K +  S++
Sbjct: 79  RKTENRVRSLQEKLRKLIEAEESG--NSAKVVEKGSASSEK 117

The following BLAST results are available for this feature:

BLAST of Cla007824 vs. TrEMBL


Match Name	E-value	Identity	Description
M5X726_PRUPE	1.1e-25	67.82	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019061mg PE=4 S...	[more]
A0A059AJZ0_EUCGR	2.4e-25	64.77	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_I00130 PE=4 ...	[more]
A0A068V1A0_COFCA	6.9e-25	56.86	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041093001 PE=4 SV=1	[more]
V4V0T1_9ROSI	2.0e-24	59.38	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003637mg PE=4 SV=1	[more]
A0A0J8CPW6_BETVU	3.4e-24	56.44	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g078810 PE=4 S...	[more]

BLAST of Cla007824 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459226\|ref\|XP_004147347.1\|	1.3e-40	78.10	PREDICTED: uncharacterized protein LOC101213780 [Cucumis sativus]	[more]
gi\|659121909\|ref\|XP_008460875.1\|	1.3e-40	80.00	PREDICTED: uncharacterized protein LOC103499620 [Cucumis melo]	[more]
gi\|1009137074\|ref\|XP_015885858.1\|	4.8e-27	64.29	PREDICTED: uncharacterized protein LOC107421190 [Ziziphus jujuba]	[more]
gi\|470136757\|ref\|XP_004304150.1\|	1.8e-26	57.27	PREDICTED: uncharacterized protein LOC101295836 [Fragaria vesca subsp. vesca]	[more]
gi\|502125585\|ref\|XP_004498984.1\|	1.8e-26	60.40	PREDICTED: uncharacterized protein LOC101509617 [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009536	plastid
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU04856	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU30256	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007824	Cla007824.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU04856	WMU04856	transcribed_cluster
WMU30256	WMU30256	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36794	FAMILY NOT NAMED	coord: 9..105 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla007824	Cla97C02G026630	Watermelon (97103) v2	wmwmbB324
Cla007824	MELO3C023226	Melon (DHL92) v3.5.1	mewmB123
Cla007824	ClCG02G000360	Watermelon (Charleston Gray)	wcgwmB206
Cla007824	CmaCh02G006450	Cucurbita maxima (Rimu)	cmawmB584
Cla007824	CmoCh02G006480	Cucurbita moschata (Rifu)	cmowmB578
Cla007824	Lsi10G007510	Bottle gourd (USVL1VR-Ls)	lsiwmB066
Cla007824	MELO3C023226.2	Melon (DHL92) v3.6.1	medwmB118
Cla007824	Carg11710	Silver-seed gourd	carwmB1056
Cla007824	CsaV3_2G019480	Cucumber (Chinese Long) v3	cucwmB154
Cla007824	Bhi10G001351	Wax gourd	wgowmB379

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007824	Cucumber (Gy14) v1	cgywmB431
Cla007824	Cucurbita maxima (Rimu)	cmawmB532
Cla007824	Cucurbita moschata (Rifu)	cmowmB521
Cla007824	Cucumber (Chinese Long) v2	cuwmB144
Cla007824	Cucurbita pepo (Zucchini)	cpewmB288
Cla007824	Cucurbita pepo (Zucchini)	cpewmB302
Cla007824	Cucurbita pepo (Zucchini)	cpewmB746
Cla007824	Cucumber (Gy14) v2	cgybwmB134
Cla007824	Melon (DHL92) v3.6.1	medwmB128
Cla007824	Silver-seed gourd	carwmB0716