MELO3C022515 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022515
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	MADS-box transcription factor
Location	chr11 : 31246870 .. 31247140 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGAGGAAAGACTCAGATGAGGTTAATAGAGAACGCTACAAGCCGTCAAGTCACCTTCTCCAAGAGGAGAAATGGTTTGATGAAAAAAGCTTTTGAGTTATCGGTTCTCTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCCCTAGAGGAAAGCTTTATGAATTTGCTAGCTCAAGGTTAACCTTTTTTTTTAATCTCTAGCTCTATTCTTTTTGTTACCAATTTTAGCGTGATGGATTGTGATCTGAATTTGAATCTGATCTAA

mRNA sequence

ATGGTGAGAGGAAAGACTCAGATGAGGTTAATAGAGAACGCTACAAGCCGTCAAGTCACCTTCTCCAAGAGGAGAAATGGTTTGATGAAAAAAGCTTTTGAGTTATCGGTTCTCTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCCCTAGAGGAAAGCTTTATGAATTTGCTAGCTCAAGCGTGATGGATTGTGATCTGAATTTGAATCTGATCTAA

Coding sequence (CDS)

ATGGTGAGAGGAAAGACTCAGATGAGGTTAATAGAGAACGCTACAAGCCGTCAAGTCACCTTCTCCAAGAGGAGAAATGGTTTGATGAAAAAAGCTTTTGAGTTATCGGTTCTCTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCCCTAGAGGAAAGCTTTATGAATTTGCTAGCTCAAGCGTGATGGATTGTGATCTGAATTTGAATCTGATCTAA

Protein sequence

MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASSSVMDCDLNLNLI*

Homology

[Close]

BLAST of MELO3C022515 vs. Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.9e-25
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
          MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV+LIIFSP+GKLYEFASS
Sbjct: 1  MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61 SVMD 65
          ++ D
Sbjct: 61 NMQD 64

[Close]

BLAST of MELO3C022515 vs. Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2)

HSP 1 Score: 112.5 bits (280), Expect = 2.0e-24
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
          MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEF+SS
Sbjct: 1  MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]

BLAST of MELO3C022515 vs. Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.5e-24
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
          MVRGKTQM+ IEN TSRQVTFSKRRNGL+KKAFELSVLCDAEVALI+FSPRGKLYEFAS+
Sbjct: 1  MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASA 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]

BLAST of MELO3C022515 vs. Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.8e-24
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
          MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVAL+IFSPR KLYEF+SS
Sbjct: 1  MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 61 SV 63
          S+
Sbjct: 61 SI 62

[Close]

BLAST of MELO3C022515 vs. Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.2e-22
Identity = 50/60 (83.33%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
          MVRG+T+++ IEN TSRQVTFSKRRNGL+KKAFELSVLCDAEVALI+FSPRG+LYEFAS+
Sbjct: 1  MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASA 60

[Close]

BLAST of MELO3C022515 vs. TrEMBL
Match: Q1EMR8_PLAMJ (MADS-box transcription factor OS=Plantago major GN=soc1 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.1e-24
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
          MVRGKTQMR IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEFASS
Sbjct: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61 SVMD 65
          S+ D
Sbjct: 61 SLQD 64

[Close]

BLAST of MELO3C022515 vs. TrEMBL
Match: A0A0B2P657_GLYSO (MADS-box protein SOC1 OS=Glycine soja GN=glysoja_042100 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.1e-24
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
          MVRGKTQMR IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEFASS
Sbjct: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61 SVMD 65
          S+ D
Sbjct: 61 SMQD 64

[Close]

BLAST of MELO3C022515 vs. TrEMBL
Match: A1XG54_SOYBN (SOC1 OS=Glycine max GN=GLYMA_18G224500 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.1e-24
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
          MVRGKTQMR IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEFASS
Sbjct: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61 SVMD 65
          S+ D
Sbjct: 61 SMQD 64

[Close]

BLAST of MELO3C022515 vs. TrEMBL
Match: A0A022QZQ2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a013555mg PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.3e-24
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
          MVRGKTQMR IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEFASS
Sbjct: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61 SVMD 65
          S+ D
Sbjct: 61 SMHD 64

[Close]

BLAST of MELO3C022515 vs. TrEMBL
Match: I1L6S0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G266200 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.0e-24
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
          MVRGKTQ+R IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEFASS
Sbjct: 1  MVRGKTQLRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61 SVMD 65
          S+ D
Sbjct: 61 SMQD 64

[Close]

BLAST of MELO3C022515 vs. TAIR10
Match: AT2G45660.1 (AT2G45660.1 AGAMOUS-like 20)

HSP 1 Score: 114.0 bits (284), Expect = 3.9e-26
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
          MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV+LIIFSP+GKLYEFASS
Sbjct: 1  MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61 SVMD 65
          ++ D
Sbjct: 61 NMQD 64

[Close]

BLAST of MELO3C022515 vs. TAIR10
Match: AT4G11880.1 (AT4G11880.1 AGAMOUS-like 14)

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-25
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
          MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEF+SS
Sbjct: 1  MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]

BLAST of MELO3C022515 vs. TAIR10
Match: AT4G22950.1 (AT4G22950.1 AGAMOUS-like 19)

HSP 1 Score: 110.9 bits (276), Expect = 3.3e-25
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
          MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVAL+IFSPR KLYEF+SS
Sbjct: 1  MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 61 SV 63
          S+
Sbjct: 61 SI 62

[Close]

BLAST of MELO3C022515 vs. TAIR10
Match: AT5G62165.1 (AT5G62165.1 AGAMOUS-like 42)

HSP 1 Score: 100.1 bits (248), Expect = 5.8e-22
Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
          MVRGK +M+ IENATSRQVTFSKRRNGL+KKA+ELSVLCDA+++LIIFS RG+LYEF+SS
Sbjct: 1  MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61 SV 63
           +
Sbjct: 61 DM 62

[Close]

BLAST of MELO3C022515 vs. TAIR10
Match: AT1G24260.2 (AT1G24260.2 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-20
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
          M RG+ +++ IEN  +RQVTF+KRRNGL+KKA+ELSVLCDAEVALIIFS RGKLYEF SS
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 SVM 64
          S M
Sbjct: 61 SSM 63

[Close]

BLAST of MELO3C022515 vs. NCBI nr
Match: gi|659120339|ref|XP_008460142.1| (PREDICTED: MADS-box protein SOC1-like [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-24
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
          MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS
Sbjct: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61 SV 63
          S+
Sbjct: 61 SM 62

[Close]

BLAST of MELO3C022515 vs. NCBI nr
Match: gi|449471671|ref|XP_004153376.1| (PREDICTED: MADS-box protein SOC1-like [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 4.5e-24
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
          MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFAS+
Sbjct: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFAST 60

Query: 61 SV 63
          S+
Sbjct: 61 SM 62

[Close]

BLAST of MELO3C022515 vs. NCBI nr
Match: gi|351726978|ref|NP_001236377.1| (SOC1 [Glycine max])

HSP 1 Score: 118.6 bits (296), Expect = 4.5e-24
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
          MVRGKTQMR IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEFASS
Sbjct: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61 SVMD 65
          S+ D
Sbjct: 61 SMQD 64

[Close]

BLAST of MELO3C022515 vs. NCBI nr
Match: gi|106879569|emb|CAJ38368.1| (MADS-box transcription factor [Plantago major])

HSP 1 Score: 118.6 bits (296), Expect = 4.5e-24
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
          MVRGKTQMR IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEFASS
Sbjct: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61 SVMD 65
          S+ D
Sbjct: 61 SLQD 64

[Close]

BLAST of MELO3C022515 vs. NCBI nr
Match: gi|1000982184|ref|XP_002511767.2| (PREDICTED: MADS-box protein SOC1 isoform X1 [Ricinus communis])

HSP 1 Score: 118.2 bits (295), Expect = 5.8e-24
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60
          MVRGKTQMR IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALI+FSPRGKLYEFASS
Sbjct: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASS 60

Query: 61 SVMD 65
          S+ D
Sbjct: 61 SMQD 64

The following BLAST results are available for this feature:

BLAST of MELO3C022515 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SOC1_ARATH	6.9e-25	87.50	MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1	[more]
AGL14_ARATH	2.0e-24	91.80	Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2	[more]
MAD50_ORYSJ	4.5e-24	90.16	MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 ...	[more]
AGL19_ARATH	5.8e-24	87.10	Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1	[more]
MAD56_ORYSJ	3.2e-22	83.33	MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 ...	[more]

BLAST of MELO3C022515 vs. TrEMBL


Match Name	E-value	Identity	Description
Q1EMR8_PLAMJ	3.1e-24	93.75	MADS-box transcription factor OS=Plantago major GN=soc1 PE=2 SV=1	[more]
A0A0B2P657_GLYSO	3.1e-24	93.75	MADS-box protein SOC1 OS=Glycine soja GN=glysoja_042100 PE=4 SV=1	[more]
A1XG54_SOYBN	3.1e-24	93.75	SOC1 OS=Glycine max GN=GLYMA_18G224500 PE=2 SV=1	[more]
A0A022QZQ2_ERYGU	5.3e-24	93.75	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a013555mg PE=4 SV=1	[more]
I1L6S0_SOYBN	7.0e-24	92.19	Uncharacterized protein OS=Glycine max GN=GLYMA_09G266200 PE=4 SV=1	[more]

BLAST of MELO3C022515 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45660.1	3.9e-26	87.50	AGAMOUS-like 20	[more]
AT4G11880.1	1.1e-25	91.80	AGAMOUS-like 14	[more]
AT4G22950.1	3.3e-25	87.10	AGAMOUS-like 19	[more]
AT5G62165.1	5.8e-22	77.42	AGAMOUS-like 42	[more]
AT1G24260.2	1.9e-20	74.60	K-box region and MADS-box transcription factor family protein	[more]

BLAST of MELO3C022515 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120339\|ref\|XP_008460142.1\|	2.0e-24	98.39	PREDICTED: MADS-box protein SOC1-like [Cucumis melo]	[more]
gi\|449471671\|ref\|XP_004153376.1\|	4.5e-24	96.77	PREDICTED: MADS-box protein SOC1-like [Cucumis sativus]	[more]
gi\|351726978\|ref\|NP_001236377.1\|	4.5e-24	93.75	SOC1 [Glycine max]	[more]
gi\|106879569\|emb\|CAJ38368.1\|	4.5e-24	93.75	MADS-box transcription factor [Plantago major]	[more]
gi\|1000982184\|ref\|XP_002511767.2\|	5.8e-24	92.19	PREDICTED: MADS-box protein SOC1 isoform X1 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0050793	regulation of developmental process
biological_process	GO:0048731	system development
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0032440	2-alkenal reductase [NAD(P)] activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022515T1	MELO3C022515T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 2.1E-30coord: 38..59 score: 2.1E-30coord: 3..23 score: 2.1
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..57 score: 4.5
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 score: 1.4
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57 scor
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 1..61 score: 30
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 3..64 score: 1.57
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..64 score: 3.1
None	No IPR available	PANTHER	PTHR11945:SF222	SUBFAMILY NOT NAMED	coord: 2..64 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C022515	Cla006944	Watermelon (97103) v1	mewmB140
MELO3C022515	Cla97C06G109510	Watermelon (97103) v2	mewmbB127
MELO3C022515	BhiUN513G7	Wax gourd	mewgoB104
MELO3C022515	Cucsa.362960	Cucumber (Gy14) v1	cgymeB586
MELO3C022515	CmaCh08G009440	Cucurbita maxima (Rimu)	cmameB822
MELO3C022515	CmoCh08G009120	Cucurbita moschata (Rifu)	cmomeB806
MELO3C022515	Lsi09G019140	Bottle gourd (USVL1VR-Ls)	lsimeB017
MELO3C022515	Cp4.1LG17g02550	Cucurbita pepo (Zucchini)	cpemeB286
MELO3C022515	CsGy6G005670	Cucumber (Gy14) v2	cgybmeB379
MELO3C022515	Carg11097	Silver-seed gourd	carmeB1043
MELO3C022515	CsaV3_6G006020	Cucumber (Chinese Long) v3	cucmeB444

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C022515	Melon (DHL92) v3.5.1	memeB052
MELO3C022515	Melon (DHL92) v3.5.1	memeB054
MELO3C022515	Cucumber (Gy14) v1	cgymeB429
MELO3C022515	Cucumber (Gy14) v1	cgymeB431
MELO3C022515	Cucurbita maxima (Rimu)	cmameB213
MELO3C022515	Cucurbita maxima (Rimu)	cmameB286
MELO3C022515	Cucurbita maxima (Rimu)	cmameB316
MELO3C022515	Cucurbita maxima (Rimu)	cmameB748
MELO3C022515	Cucurbita moschata (Rifu)	cmomeB199
MELO3C022515	Cucurbita moschata (Rifu)	cmomeB279
MELO3C022515	Cucurbita moschata (Rifu)	cmomeB309
MELO3C022515	Cucurbita moschata (Rifu)	cmomeB740
MELO3C022515	Wild cucumber (PI 183967)	cpimeB176
MELO3C022515	Wild cucumber (PI 183967)	cpimeB177
MELO3C022515	Wild cucumber (PI 183967)	cpimeB433
MELO3C022515	Cucumber (Chinese Long) v2	cumeB182
MELO3C022515	Cucumber (Chinese Long) v2	cumeB442
MELO3C022515	Watermelon (Charleston Gray)	mewcgB122
MELO3C022515	Watermelon (Charleston Gray)	mewcgB124
MELO3C022515	Watermelon (97103) v1	mewmB097
MELO3C022515	Watermelon (97103) v1	mewmB098
MELO3C022515	Cucurbita pepo (Zucchini)	cpemeB115
MELO3C022515	Cucurbita pepo (Zucchini)	cpemeB552
MELO3C022515	Cucurbita pepo (Zucchini)	cpemeB791
MELO3C022515	Bottle gourd (USVL1VR-Ls)	lsimeB345
MELO3C022515	Cucumber (Gy14) v2	cgybmeB152
MELO3C022515	Silver-seed gourd	carmeB0231
MELO3C022515	Silver-seed gourd	carmeB0621
MELO3C022515	Cucumber (Chinese Long) v3	cucmeB178
MELO3C022515	Cucumber (Chinese Long) v3	cucmeB179
MELO3C022515	Watermelon (97103) v2	mewmbB124
MELO3C022515	Watermelon (97103) v2	mewmbB125