Cp4.1LG17g02550 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g02550
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMADS box transcription factor
LocationCp4.1LG17 : 2200090 .. 2206251 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTTCACTCTCTCTCTCTGACTTTTCTCCCCATTTCCATTTCCATTTCCATTTCCATTTCCTTCCCTGTTCGTGATTCTCCTCTTATCCTCCCCCTCTCCTCTTTTCATTTTTTTCCCAAATCAAGAAACTTAGGATTGGATGAATCACCCTCCTTTCTCTCTCCTCCTCTCTCTCTCCTCCTCCTTCTTCTTCCTCCTTTAGCTTTTGTGTACTCTAATTCCTTTCCAAATATTCCTCCTCTCCCTTTTTTAGCTTTCTCCAGCAAATTTGTAAAGTGGGTTTGAAACTACTCCACAAAAGGAAAGGTGGGTTTGCTTTGTTTTCCTCTTCTCTCCTTTGTGTTCTTCAAATTTTGTTTCTGATTCAACCAAAATAGCCCCTCTGCCTCCTTTTCTCCTTCTGGGTTTTCAGGTTTCTGGGGTTTTCTTTTGCTTTTAGATTGGTTCTGCCCTTTTCTGCTTCTATTTCAAGGTTTTCTTGTCTTCTTTTGTTTTTTTCTCTTACTTTTTGGGTTTAGTGGGGAGATTTCAGTGCTTCTGCTCCTTGTTTGATTACACTTTTGTTTCCTTCTGTGGCCTTCCCCTTCTTTTCTTGATCTATAAATTCATCTTTTCCTTTGTGGGTTTCTTGAGATCCATCTCTGTGTAAGGGTTTATAGTGTTATTTAGGGGTAATTCCTCTATTTTTTAGTGTAAAGGGGTTTCAAATCGTGAGAAAATGGTGAGAGGGAAGACCCAGATGAGGTTAATTGAAAACGCAACAAGCAGGCAAGTCACCTTCTCCAAGAGGCGAAATGGGTTGATGAAAAAAGCCTTTGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGGTCTTATCATCTTCTCTCCTAGAGGAAAGCTTTATGAATTTGCAAACTCAAGGTACTCTTAACAACTGCTTTTGCTTCAATCCATTCAGATTGTATGGCTTTAATCTTGATCTGCCTATGAATCTTTCCATTTATGAATGATTTCTTATAGGTCTTAAGTAGCCTGGTTTTTGCTGTTGTTTTCAATGAAACTATTGGGAGAAGTGAAAAGGGTTTGTACTATATAACCATAGTTTAAGCACACATACTGTTGATTACTGTTTGGTTTATATTAATTTATCAGTTGATTCCTTATTTAGATTATGATCACACCCAAAAGCCTGCAATGGCTGCTCCTTTTTAGAACCCATGTCTCAGTTTAAGGATTTATCTAATTTTTCTTCATGTCCCAAGAACATTAATATGTTCAAATGTCTAAACTGACCATAAAACTTTAGAGTTTTCTAAGAAATGATATTGTATTTTTGTCATTTGCCACTCTTGACATTCCTATAATAATTGTATTTTTCACCTTCAGCTTGTTTTTTTTTATTGTTACAACATTTTAACGTTGTTGATAATTATTGGATGTTCCTGGATTTGTGTTCTGTGTTCTATTACTATTGTCTAGGTTTTGTTCCTAATGGTGGAGAAGATTATTGCATGCATGCAATATAGAAAGATTTGTCTGTTGATTCAGTGGTTTACTGTGTTCATATCATTTTTTTTGTTTTTCATTCCCAGTTTTTGCTGAATAGATTGTATTTCATATGTTATTTGTGACATCTAAGGTAGGTGTTCGCTTTCAATCCTAGTTGCTATATGGATGGAGATTTCTCCAATATATAAATAAAAAAAATAAAAATAAAAATAAAAAAAAATAAATTATAAGTTCACTGTTCCACTTGAACTTTTACCTAGATTTGAGATAGGTCTCTAAACTTTAAAAAGTTTCTAACCGGTAGGGGTGTATATCTAACCCACTCACTCGAGAACTCAACCTAAATTATAAAGGTTGGATTGGGTTTAAAAGGATTTTTGGTTTGGGTTGGATTCGTTTTTTGGAACCGGATCCAGTTTAGGTTGGGTTTGGATTCGAAATTCAAATTATTGGGTCCAGACCCAACTCAAAAGTCTTAAAAATAAGAAAATAAAATAGGTCCAAACCCACATAGCACAAGCCCCACGCAGTTCAAGCCCATGAGTCATTGTCTGCGTCTGCCCCTACCTCGAGGGTAACTAGGTATGTAAAATGAAGTCTTGACTCTCGCCCTCGCAATCTTACCACTCACATTACAACGTTCGTCTTCATCGTTCGACTCATCTTTTTGTGTGTTGTCGTTCGACTTCTCAGTTCTCATCTCACTTTCGTCTCGTCTTTGTGTGTCGTCGAACATCGATGTTCCTCGCCTCTTTACTTCTCCATTGGACTCTCTTCTCAGTTCTCATTTCTTTGCTTGACCTTGTTTGTGTTTCTTGTCGGATGTCGCTGCCGAGTATCTCTTTGCTCGACACTTTGTTCCACTTCTGTCAGGCTTCTCCGCTCAACAAAATTTTGGAGCAAGCCGTTTCAGGTTGGGTTGTGAAAATTTTCGAGTTGGATTGGGATACCAATTCAACTAACTCAAACTTTTGGGTTGGTTCAAAAATATCACGTACACCCCTACTAATAGATCCCTAAACTTTTAATTTTATATTTAATATATCCTTAAACTTAAAGAATATCTAATAAATCCCTAAACTAAACTTTCGATTTTGTGTGTATTAAATCTTTGAACTTTCAACTTTGTGTTAAATACATCACTCAATTTATTCAACATTTTTTCAAATTCATGAACCTATGCAAAACAAAAATAAAGCTTTTACGTACATTCATGTATAATAAATTTATTGATTTTAAATAATGTTGAACATATTGAGGATTTTTAGACATATAATTCTTATTAAATACTTTTTAAAGTTTAGAGACGTACGAGACAAACTTAAAAATTATAGACTCAAGTAGTTTAAATTTAACGTAAAAAAGGGTTTGGTTATAATCTCCCAAGCTTGCAGTCCAAAGTCCTAACAACTTAGTTACTTCTATGATTTTGTTCACTAAGTTATCCAAACTCCAAAGTTCACTAAGTTTTTGTTGGAACAAAAGAAAAAGCATTATCTAGACTGCTCTTAGTGGGTCCTAAATTTTGTAGCCAATTTTAAGGATTGTTTTTATAGATTTGTCATCCCTAAAGTTAGTGTTATCCTCAAAGGTAGGTCTTCGAAGCATAGGTTCATGATTAGCAACCCTATCTGTTACACTCAATTTCCTATCTCAAAATACACACAAACTTTCTATTTCTTTTATCCTAATTTAGTTCTAATTATTTAGAAAATCAATTAAAGTTGGTCAAAAGTACTTGGAAACTGAATTTTGTGTTAAATGCATATCGTATGTTTATTTACGTTGGGTTACATACCCATTTATGATGATGAGTACGGACGTGTACACTATGATGATGATTATCATGTCTTGCATGATATTCGAAGTTTGTTGTACCTCCGAATGTCGGTGGACACAAGGGGTGTGCGAATTGCTTGATGGGTTCATGTGTGAGTCGTGCGTAGGGAAGTACTACACAAAATTTTTCGGGACTGGAGGATACATTTTAAATGATATGTCCCTGATCATGATTGCATGTGTTTGCATTCCCTGATCCCAATAGCGGGGTCACTTATGTGCTACTTCTATATTTCACGCAAAGACAACCTACCTCTGTACGGTTGATAGTGGCATCACAATTAAAGACCATGACACATGCATAGGCTAGTTTCTTTCAATTTTGTAGATCTTAAGTTAGTATAGGACCTTACTAGTTTTATATTTACTTATGTTTATTTTAATTTTTGCTCCGTATGGTTTTAAGACTTTTTTCTTATACATGCAAATCCATGACATTGTTTTATGAAATTGTTTTAAATGAATATTTCCGCACAAAATATTACGTCATGCATATGGTAGCGTCTTTAAGCTAGTAGAAAACTAGGATCGTTACAGTTGGTATCAAAGTTTTAGGTTATAGATTATGTAGACTAGTCTACGAAGTAGACTTGACATGTTCTATGGTCCTACCATCGATGTCCCATCGCCATCAAGTATGTCATGGTCCCACCATCGATGTTCCATCTTGGTCAAGTATGTCATGCACAATAGGTTATGTTACGAAGATAGTAACTATTTTAGGTTAGAAGAAATATAGGAAGACACCCAAATTGTATCTAAGAAGTTTTGTAGGTAGATTATGATAAAATCTAAACCTAATTCAACCTTAAAAAACACAATAACTTGTTCCTTGTGATCCCAAGTCTTTAATGTTTCGTGGTTATTGGTAAGAACTTATTGAATCTATCGTTTGGGCTAAAAAAGTTTCTCCTACTACTCAGTCTAGAATCTTGAGTATTGTCCAACGACATGCGGTAAGAGTAGCCCATTATCTTCTAGGTGGAATTATCACAACATGAACGTTCTTCTTAGCAACAATTATTGCAGTCGAATAATGGTTAGGAGGATTTGAAAGACATTATGGCACTAAGATTTAGCCAAAGCTTAGCTCAGGACTCCACTACTCGTCGTATTTAGTATTGAAGACTTGTGAATATGGGAAACGACACAGAAGAAATACGGCGATGGGTCGATATAGGAAATGAACAGTAAAGCAATGTGAATTTTGTGTGGGATCTTATTTCAATGAACTCATTCAATAAATATGAATATTGATCTGTGCATGAACTCATTTAATTTGCTTCCACATTTCTGCTCTGATCTTCAGCATGCAGGCAACTCTAGAGCGGTACAGAAAGCATGCCAAAACCAAAGAAGCCCTCGACCCTCCATCGGTTAATGATATCCAGGTTTGTCCCCAACATTATTCCTAGTTTTAACCATTTGATGATCCACATTCAATAATCATCTGCAGTTGGAGCATCTGAATCATGAAGAAGCAGCCACCCTGATGAAGAAAATAGAGCAGCTTGAAGTTTCAAAACGGTTCTAATGACTTAATTTCTTGTTTTGTTGGTTAAATAGTTGTTCTAATGCTGAAATCTGGGCTTGTCTTAAAACTGTTCATAAAAAAATTGTAGGAAAATGTTGGGAGAAGATCTGGGTTCTTGCTCCATTGATGAACTTCAGCAGGTTGAACTTCAGTTGGAGAAAAGTGTTTGCAAAATTAGAGCCAGAAAGGTTTTTGATTCAATCCCTTTTTTCTCTCTCTAAATTCAATTCTCTCTCTAACCCGGATTTTTATATTACAGGTTGAAGTGTTTGAAGAACAGATTAAACAACTAAAGCACAAGGTGAAAGGATTCAAACATTCATCTGAAAACTGTTTCCATTGGGTTTCTTTTTTTTTTTTAAATGAATCTTTGGGCTGAAATGAAATGCAGGAGAAACTCTTGGAAGCTGAAAATGCTAAGCTACTCGAAAAGGTAAACGTCTTAATTTGTAGAGACTTGATAGAACAACAAACCTCCACAACGATACGATAATGTTTACTTTGTTCGTAAATATTGTTCTTTTTGAGCTTACTCTTCCGAGCTTATCTTTAGGGTTTTTAAAACGCGTCTACTAGGAAGAGATTTCTACACCTTATAAGCAATGCTTCGTTCCCTCTCTAACCAATCCACCTCTTTTAGAGGGGGCTAGCGTTCTCGTTGGCACGCCACCTACACCATTTGTAACTTCTCCTCTCCATCGATGTAGCTCGAGATTCCACGTTAGGAGAGGAGAACAAAGCATTCCTTATAAGGGTGTAGAAACCTCTTTCTAGTATATACCTATAATTGTGATACTCCAACAAGATTTGCACGACCTCTATCAAAGATATATGATATTATGTTAGTTAAGCTATGTTCTTGTTGGTTCTTGACTCGACGAATGTCGGACTTTGGTCATAGCTGGGTATTAACAGCTAACATGGGTATGTTTTATTTTCATATATAGTGGGAAAGTGAGGCAGAAGGGGGAGTAAAGGAAGTAGAAAGAGGGGAGAATTTAACGAACTATGCAGAAAGTAGCAGTCCAAGTTCAGAGGTAGAAACAGAGTTGTTCATTGGGCCACCTGAAACAAGGCCAAGAACATTTCTTTCCCTTAACTGATTCAATTTGTAGCCCTAATATTACTTTATGTTTATAACAATAATAATACTCTTTTTCTCTTCAATTTCTACTCCATAAAACATTACACACACAGGGAGAGATTTTGGAAAATGTTTGTAAATAATTCTCATTTTTCATCTCTTTATACCTCTTCACAGACGTGCTGATATTGCTTGTTCTTCATTTTTTTTTTCAA

mRNA sequence

CATTTCACTCTCTCTCTCTGACTTTTCTCCCCATTTCCATTTCCATTTCCATTTCCATTTCCTTCCCTGTTCGTGATTCTCCTCTTATCCTCCCCCTCTCCTCTTTTCATTTTTTTCCCAAATCAAGAAACTTAGGATTGGATGAATCACCCTCCTTTCTCTCTCCTCCTCTCTCTCTCCTCCTCCTTCTTCTTCCTCCTTTAGCTTTTGTGTACTCTAATTCCTTTCCAAATATTCCTCCTCTCCCTTTTTTAGCTTTCTCCAGCAAATTTGTAAAGTGGGTTTGAAACTACTCCACAAAAGGAAAGGTGGGTTTGCTTTGTTTTCCTCTTCTCTCCTTTGTGTTCTTCAAATTTTGTTTCTGATTCAACCAAAATAGCCCCTCTGCCTCCTTTTCTCCTTCTGGGTTTTCAGGTTTCTGGGGTTTTCTTTTGCTTTTAGATTGGTTCTGCCCTTTTCTGCTTCTATTTCAAGGTTTTCTTGTCTTCTTTTGTTTTTTTCTCTTACTTTTTGGGTTTAGTGGGGAGATTTCAGTGCTTCTGCTCCTTGTTTGATTACACTTTTGTTTCCTTCTGTGGCCTTCCCCTTCTTTTCTTGATCTATAAATTCATCTTTTCCTTTGTGGGTTTCTTGAGATCCATCTCTGTGTAAGGGTTTATAGTGTTATTTAGGGGTAATTCCTCTATTTTTTAGTGTAAAGGGGTTTCAAATCGTGAGAAAATGGTGAGAGGGAAGACCCAGATGAGGTTAATTGAAAACGCAACAAGCAGGCAAGTCACCTTCTCCAAGAGGCGAAATGGGTTGATGAAAAAAGCCTTTGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGGTCTTATCATCTTCTCTCCTAGAGGAAAGCTTTATGAATTTGCAAACTCAAGCATGCAGGCAACTCTAGAGCGGTACAGAAAGCATGCCAAAACCAAAGAAGCCCTCGACCCTCCATCGGTTAATGATATCCAGTTGGAGCATCTGAATCATGAAGAAGCAGCCACCCTGATGAAGAAAATAGAGCAGCTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGTTCTTGCTCCATTGATGAACTTCAGCAGGTTGAACTTCAGTTGGAGAAAAGTGTTTGCAAAATTAGAGCCAGAAAGGTTGAAGTGTTTGAAGAACAGATTAAACAACTAAAGCACAAGGAGAAACTCTTGGAAGCTGAAAATGCTAAGCTACTCGAAAAGTGGGAAAGTGAGGCAGAAGGGGGAGTAAAGGAAGTAGAAAGAGGGGAGAATTTAACGAACTATGCAGAAAGTAGCAGTCCAAGTTCAGAGGTAGAAACAGAGTTGTTCATTGGGCCACCTGAAACAAGGCCAAGAACATTTCTTTCCCTTAACTGATTCAATTTGTAGCCCTAATATTACTTTATGTTTATAACAATAATAATACTCTTTTTCTCTTCAATTTCTACTCCATAAAACATTACACACACAGGGAGAGATTTTGGAAAATGTTTGTAAATAATTCTCATTTTTCATCTCTTTATACCTCTTCACAGACGTGCTGATATTGCTTGTTCTTCATTTTTTTTTTCAA

Coding sequence (CDS)

ATGGTGAGAGGGAAGACCCAGATGAGGTTAATTGAAAACGCAACAAGCAGGCAAGTCACCTTCTCCAAGAGGCGAAATGGGTTGATGAAAAAAGCCTTTGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGGTCTTATCATCTTCTCTCCTAGAGGAAAGCTTTATGAATTTGCAAACTCAAGCATGCAGGCAACTCTAGAGCGGTACAGAAAGCATGCCAAAACCAAAGAAGCCCTCGACCCTCCATCGGTTAATGATATCCAGTTGGAGCATCTGAATCATGAAGAAGCAGCCACCCTGATGAAGAAAATAGAGCAGCTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGTTCTTGCTCCATTGATGAACTTCAGCAGGTTGAACTTCAGTTGGAGAAAAGTGTTTGCAAAATTAGAGCCAGAAAGGTTGAAGTGTTTGAAGAACAGATTAAACAACTAAAGCACAAGGAGAAACTCTTGGAAGCTGAAAATGCTAAGCTACTCGAAAAGTGGGAAAGTGAGGCAGAAGGGGGAGTAAAGGAAGTAGAAAGAGGGGAGAATTTAACGAACTATGCAGAAAGTAGCAGTCCAAGTTCAGAGGTAGAAACAGAGTTGTTCATTGGGCCACCTGAAACAAGGCCAAGAACATTTCTTTCCCTTAACTGA

Protein sequence

MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANSSMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLGSCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEGGVKEVERGENLTNYAESSSPSSEVETELFIGPPETRPRTFLSLN
Homology
[Close]
BLAST of Cp4.1LG17g02550 vs. Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.2e-64
Identity = 142/213 (66.67%), Postives = 169/213 (79.34%), Query Frame = 1 

Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANS 60
           MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV LIIFSP+GKLYEFA+S
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           +MQ T++RY +H K + +  P  V++  ++HL + EAA +MKKIEQLE SKRK+LGE +G
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKP--VSEENMQHLKY-EAANMMKKIEQLEASKRKLLGEGIG 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           +CSI+ELQQ+E QLEKSV  IRARK +VF+EQI+QLK KEK L AEN KL EKW S  E 
Sbjct: 121 TCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSH-ES 180

Query: 181 GVKEVERGENLTNYAESSSPSSEVETELFIGPP 214
            V   +  E+     E SSPSSEVET+LFIG P
Sbjct: 181 EVWSNKNQESTGRGDEESSPSSEVETQLFIGLP 209

[Close]
BLAST of Cp4.1LG17g02550 vs. Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.9e-51
Identity = 118/216 (54.63%), Postives = 157/216 (72.69%), Query Frame = 1 

Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANS 60
           MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV L+IFSPR KLYEF++S
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           S+ AT+ERY++  + KE  +    ND   +    +E + L KKIEQLE+SKRK+LGE + 
Sbjct: 61  SIAATIERYQR--RIKEIGNNHKRNDNSQQ--ARDETSGLTKKIEQLEISKRKLLGEGID 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           +CSI+ELQQ+E QL++S+ +IRA+K ++  E+I++LK +E+ L  EN  L EKW      
Sbjct: 121 ACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGMGTA 180

Query: 181 GVKEVERGENLTNYAESSSPSSEVETELFIGPPETR 217
            +   +    L++   +   + EVET LFIGPPETR
Sbjct: 181 TIASSQ--STLSSSEVNIDDNMEVETGLFIGPPETR 210

[Close]
BLAST of Cp4.1LG17g02550 vs. Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2)

HSP 1 Score: 195.3 bits (495), Expect = 7.2e-49
Identity = 117/217 (53.92%), Postives = 154/217 (70.97%), Query Frame = 1 

Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEF-AN 60
           MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV LIIFSPRGKLYEF ++
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61  SSMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDL 120
           SS+  T+ERY+K  +   +    + N  Q    + +E   L +KIE LE+S RKM+GE L
Sbjct: 61  SSIPKTVERYQKRIQDLGSNHKRNDNSQQ----SKDETYGLARKIEHLEISTRKMMGEGL 120

Query: 121 GSCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAE 180
            + SI+ELQQ+E QL++S+ KIRA+K ++  E+ ++LK KE+ L AEN  L+EK E +  
Sbjct: 121 DASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQGR 180

Query: 181 GGVKEVERGENLTNYAESSSPSSEVETELFIGPPETR 217
           G +  +    + T+  +      EV T+LFIGPPETR
Sbjct: 181 GIIGRISSSSS-TSELDIDDNEMEVVTDLFIGPPETR 212

[Close]
BLAST of Cp4.1LG17g02550 vs. Swiss-Prot
Match: AGL42_ARATH (MADS-box protein AGL42 OS=Arabidopsis thaliana GN=AGL42 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 8.8e-47
Identity = 113/216 (52.31%), Postives = 152/216 (70.37%), Query Frame = 1 

Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANS 60
           MVRGK +M+ IENATSRQVTFSKRRNGL+KKA+ELSVLCDA++ LIIFS RG+LYEF++S
Sbjct: 1   MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
            MQ T+ERYRK+ K  E  +  S   I L+ L  +EA+ ++ KIE LE  KRK+LG+ + 
Sbjct: 61  DMQKTIERYRKYTKDHETSNHDS--QIHLQQLK-QEASHMITKIELLEFHKRKLLGQGIA 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           SCS++ELQ+++ QL++S+ K+R RK ++F+EQ+++LK KEK L  EN KL +K       
Sbjct: 121 SCSLEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQK------- 180

Query: 181 GVKEVERGENLTNYAESSSP---SSEVETELFIGPP 214
            V    RG +     E       + EVET+LFIG P
Sbjct: 181 NVINPWRGSSTDQQQEKYKVIDLNLEVETDLFIGLP 206

[Close]
BLAST of Cp4.1LG17g02550 vs. Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.2e-46
Identity = 114/215 (53.02%), Postives = 149/215 (69.30%), Query Frame = 1 

Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANS 60
           MVRGKTQM+ IEN TSRQVTFSKRRNGL+KKAFELSVLCDAEV LI+FSPRGKLYEFA++
Sbjct: 1   MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASA 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           S Q T+ERYR +  TKE +   +V    +E +   +A  L KK+E LE  KRK+LGE L 
Sbjct: 61  STQKTIERYRTY--TKENIGNKTVQQ-DIEQVK-ADADGLAKKLEALETYKRKLLGEKLD 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
            CSI+EL  +E++LE+S+  IR RK ++ EEQ+ +L+ KE  L  +N +L EK +++   
Sbjct: 121 ECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREKCKNQPPL 180

Query: 181 GVKEVERG--ENLTNYAESSSPSSEVETELFIGPP 214
                 R   EN      +++ + +VETELFIG P
Sbjct: 181 SAPLTVRAEDENPDRNINTTNDNMDVETELFIGLP 211

[Close]
BLAST of Cp4.1LG17g02550 vs. TrEMBL
Match: O81662_PIMBR (Transcription activator OS=Pimpinella brachycarpa GN=MADS1 PE=2 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 3.8e-65
Identity = 147/216 (68.06%), Postives = 175/216 (81.02%), Query Frame = 1 

Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANS 60
           MVRGKTQMR IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV LIIFSPRGKL+EFA+S
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLHEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           SM  T+ERYRKH K  ++ + P V ++Q  HL H E A+L KKIE LEVSKRK+LGE LG
Sbjct: 61  SMHETIERYRKHTKDVQSNNTPVVQNMQ--HLKH-ETASLAKKIELLEVSKRKLLGEGLG 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           +CSI+ELQQ+E QLEKSVC +RARK++VF+EQI+QLK KEK L A+NA LL K++ +   
Sbjct: 121 TCSINELQQIEQQLEKSVCTVRARKMQVFKEQIEQLKEKEKTLAADNAILLAKYDVQPR- 180

Query: 181 GVKEVERGENLTNYAESSSPSSEVETELFIGPPETR 217
             +  E G NLT+  E+S  +S+VETELFIGPPE R
Sbjct: 181 -QESPEDGGNLTSTTENSE-NSDVETELFIGPPEKR 210

[Close]
BLAST of Cp4.1LG17g02550 vs. TrEMBL
Match: T1QFU1_BRACI (MADS box transcription factor SOC1 variant 7 OS=Brassica carinata GN=SOC1 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 5.5e-64
Identity = 146/220 (66.36%), Postives = 171/220 (77.73%), Query Frame = 1 

Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANS 60
           MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV LIIFSP+ KLYEFA+S
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKAKLYEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           +MQ T++RY +H  TK+ +    V++  L+HL H EAA +MKKIEQLE SKRK+LGE +G
Sbjct: 61  NMQDTIDRYLRH--TKDRVSSKPVSEENLQHLKH-EAANMMKKIEQLEASKRKLLGEGIG 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           SCSI+ELQQ+ELQLEKSV  IRARK +VF+EQI+QLK KEK L AEN KL EKW      
Sbjct: 121 SCSIEELQQIELQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENKKLAEKW------ 180

Query: 181 GVKEVERGENLTNYA----ESSSPSSEVETELFIGPPETR 217
           G  E+E   N    +    E SSPSSEVET+LFIG P +R
Sbjct: 181 GSHEIEVWSNKNQESGRGDEESSPSSEVETQLFIGLPVSR 211

[Close]
BLAST of Cp4.1LG17g02550 vs. TrEMBL
Match: T1QFT7_BRACI (MADS box transcription factor SOC1 variant 8 OS=Brassica carinata GN=SOC1 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 9.5e-64
Identity = 146/220 (66.36%), Postives = 170/220 (77.27%), Query Frame = 1 

Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANS 60
           MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV LIIFSP+ KLYEFA+S
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKAKLYEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           +MQ T++RY +H K + +  P  V++  L+HL H EAA +MKKIEQLE SKRK+LGE +G
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKP--VSEENLQHLKH-EAANMMKKIEQLEASKRKLLGEGIG 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           SCSI+ELQQ+E QLEKSV  IRARK +VF+EQI+QLK KEK L AEN KL EKW      
Sbjct: 121 SCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENKKLAEKW------ 180

Query: 181 GVKEVERGENLTNYA----ESSSPSSEVETELFIGPPETR 217
           G  E+E   N    +    E SSPSSEVETELFIG P +R
Sbjct: 181 GSHEIEVRSNKNQESGRGDEESSPSSEVETELFIGLPVSR 211

[Close]
BLAST of Cp4.1LG17g02550 vs. TrEMBL
Match: V9LZP8_BRACI (MADS box transcription factor SOC1 variant 4 OS=Brassica carinata PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.2e-63
Identity = 145/217 (66.82%), Postives = 169/217 (77.88%), Query Frame = 1 

Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANS 60
           MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV LIIFSP+ KLYEFA+S
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKAKLYEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           +MQ T++RY +H  TK+ +    V++  L+HL H EAA +MKKIEQLE SKRK+LGE +G
Sbjct: 61  NMQDTIDRYLRH--TKDRVSSKPVSEENLQHLKH-EAANMMKKIEQLEASKRKLLGEGIG 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           SCSI+ELQQ+ELQLEKSV  IRARK +VF+EQI+QLK KEK L AEN KL EKW      
Sbjct: 121 SCSIEELQQIELQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENKKLAEKW------ 180

Query: 181 GVKEVERGENLTNYA----ESSSPSSEVETELFIGPP 214
           G  E+E   N    +    E SSPSSEVET+LFIG P
Sbjct: 181 GSHEIEVWSNKNQESGRGDEESSPSSEVETQLFIGLP 208

[Close]
BLAST of Cp4.1LG17g02550 vs. TrEMBL
Match: V9M0H9_BRAJU (MADS box transcription factor SOC1 variant 5 OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.6e-63
Identity = 145/217 (66.82%), Postives = 169/217 (77.88%), Query Frame = 1 

Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANS 60
           MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV LIIFSP+GKLYEFA+S
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           +MQ T++RY +H K + +  P  V++  L+HL H EAA +MKKIEQLE SKRK+LGE +G
Sbjct: 61  NMQDTVDRYLRHTKDRVSTKP--VSEENLQHLKH-EAANMMKKIEQLEASKRKLLGEGIG 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           SCSI+ELQQ+E QLEKSV  IRARK +VF+EQI+QLK KEK L AEN KL EKW      
Sbjct: 121 SCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENKKLTEKW------ 180

Query: 181 GVKEVERGENLTNYA----ESSSPSSEVETELFIGPP 214
           G  E+E   N    +    E SSPSSEVET+LFIG P
Sbjct: 181 GSHEIEVWSNKNQESGKGDEESSPSSEVETQLFIGLP 208

[Close]
BLAST of Cp4.1LG17g02550 vs. TAIR10
Match: AT2G45660.1 (AT2G45660.1 AGAMOUS-like 20)

HSP 1 Score: 247.7 bits (631), Expect = 6.9e-66
Identity = 142/213 (66.67%), Postives = 169/213 (79.34%), Query Frame = 1 

Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANS 60
           MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV LIIFSP+GKLYEFA+S
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           +MQ T++RY +H K + +  P  V++  ++HL + EAA +MKKIEQLE SKRK+LGE +G
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKP--VSEENMQHLKY-EAANMMKKIEQLEASKRKLLGEGIG 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           +CSI+ELQQ+E QLEKSV  IRARK +VF+EQI+QLK KEK L AEN KL EKW S  E 
Sbjct: 121 TCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSH-ES 180

Query: 181 GVKEVERGENLTNYAESSSPSSEVETELFIGPP 214
            V   +  E+     E SSPSSEVET+LFIG P
Sbjct: 181 EVWSNKNQESTGRGDEESSPSSEVETQLFIGLP 209

[Close]
BLAST of Cp4.1LG17g02550 vs. TAIR10
Match: AT4G22950.1 (AT4G22950.1 AGAMOUS-like 19)

HSP 1 Score: 202.2 bits (513), Expect = 3.3e-52
Identity = 118/216 (54.63%), Postives = 157/216 (72.69%), Query Frame = 1 

Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANS 60
           MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV L+IFSPR KLYEF++S
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           S+ AT+ERY++  + KE  +    ND   +    +E + L KKIEQLE+SKRK+LGE + 
Sbjct: 61  SIAATIERYQR--RIKEIGNNHKRNDNSQQ--ARDETSGLTKKIEQLEISKRKLLGEGID 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           +CSI+ELQQ+E QL++S+ +IRA+K ++  E+I++LK +E+ L  EN  L EKW      
Sbjct: 121 ACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGMGTA 180

Query: 181 GVKEVERGENLTNYAESSSPSSEVETELFIGPPETR 217
            +   +    L++   +   + EVET LFIGPPETR
Sbjct: 181 TIASSQ--STLSSSEVNIDDNMEVETGLFIGPPETR 210

[Close]
BLAST of Cp4.1LG17g02550 vs. TAIR10
Match: AT4G11880.1 (AT4G11880.1 AGAMOUS-like 14)

HSP 1 Score: 195.3 bits (495), Expect = 4.1e-50
Identity = 117/217 (53.92%), Postives = 154/217 (70.97%), Query Frame = 1 

Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEF-AN 60
           MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV LIIFSPRGKLYEF ++
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61  SSMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDL 120
           SS+  T+ERY+K  +   +    + N  Q    + +E   L +KIE LE+S RKM+GE L
Sbjct: 61  SSIPKTVERYQKRIQDLGSNHKRNDNSQQ----SKDETYGLARKIEHLEISTRKMMGEGL 120

Query: 121 GSCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAE 180
            + SI+ELQQ+E QL++S+ KIRA+K ++  E+ ++LK KE+ L AEN  L+EK E +  
Sbjct: 121 DASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQGR 180

Query: 181 GGVKEVERGENLTNYAESSSPSSEVETELFIGPPETR 217
           G +  +    + T+  +      EV T+LFIGPPETR
Sbjct: 181 GIIGRISSSSS-TSELDIDDNEMEVVTDLFIGPPETR 212

[Close]
BLAST of Cp4.1LG17g02550 vs. TAIR10
Match: AT5G62165.1 (AT5G62165.1 AGAMOUS-like 42)

HSP 1 Score: 188.3 bits (477), Expect = 5.0e-48
Identity = 113/216 (52.31%), Postives = 152/216 (70.37%), Query Frame = 1 

Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANS 60
           MVRGK +M+ IENATSRQVTFSKRRNGL+KKA+ELSVLCDA++ LIIFS RG+LYEF++S
Sbjct: 1   MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
            MQ T+ERYRK+ K  E  +  S   I L+ L  +EA+ ++ KIE LE  KRK+LG+ + 
Sbjct: 61  DMQKTIERYRKYTKDHETSNHDS--QIHLQQLK-QEASHMITKIELLEFHKRKLLGQGIA 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           SCS++ELQ+++ QL++S+ K+R RK ++F+EQ+++LK KEK L  EN KL +K       
Sbjct: 121 SCSLEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQK------- 180

Query: 181 GVKEVERGENLTNYAESSSP---SSEVETELFIGPP 214
            V    RG +     E       + EVET+LFIG P
Sbjct: 181 NVINPWRGSSTDQQQEKYKVIDLNLEVETDLFIGLP 206

[Close]
BLAST of Cp4.1LG17g02550 vs. TAIR10
Match: AT5G51870.3 (AT5G51870.3 AGAMOUS-like 71)

HSP 1 Score: 162.9 bits (411), Expect = 2.2e-40
Identity = 101/222 (45.50%), Postives = 146/222 (65.77%), Query Frame = 1 

Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANS 60
           MVRGK +++ IEN TSRQVTFSKRR+GL KKA ELSVLCDA+V  I+FS  G+L+E+++S
Sbjct: 1   MVRGKIEIKKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQSGRLHEYSSS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
            M+  ++RY K +      + P V +  L+ L   E   ++KKI+ LEV  RK+LG+ L 
Sbjct: 61  QMEKIIDRYGKFSNAFYVAERPQV-ERYLQELK-MEIDRMVKKIDLLEVHHRKLLGQGLD 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESE--- 180
           SCS+ ELQ+++ Q+EKS+  +R+RK E++ +Q+K+LK KE+ L  E  +LLE+   E   
Sbjct: 121 SCSVTELQEIDTQIEKSLRIVRSRKAELYADQLKKLKEKERELLNERKRLLEEQNRERLM 180

Query: 181 ---AEGGVKEVERGENLTNYAESSSPSSEVETELFIGPPETR 217
                  ++  ++G   T     +  SSEVET+LFIG P TR
Sbjct: 181 RPVVPATLQICDKGN--TEGGHRTKHSSEVETDLFIGLPVTR 218

[Close]
BLAST of Cp4.1LG17g02550 vs. NCBI nr
Match: gi|449471671|ref|XP_004153376.1| (PREDICTED: MADS-box protein SOC1-like [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 2.2e-90
Identity = 186/225 (82.67%), Postives = 201/225 (89.33%), Query Frame = 1 

Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANS 60
           MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEV LIIFSPRGKLYEFA++
Sbjct: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFAST 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDI-QLEHLNHEEAATLMKKIEQLEVSKRKMLGEDL 120
           SMQAT+ERYRK AK KEALDPP VN+I QLEHLNHEEAA+L+KKIEQLEVSKRKMLGEDL
Sbjct: 61  SMQATIERYRKRAKAKEALDPPFVNNIVQLEHLNHEEAASLIKKIEQLEVSKRKMLGEDL 120

Query: 121 GSCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAE 180
           GSCS+DELQQ+E QLEKSVCKIRARK+EVFEEQIKQLK KEK+L+ ENAKLL+KWESE  
Sbjct: 121 GSCSLDELQQLEHQLEKSVCKIRARKIEVFEEQIKQLKQKEKVLQDENAKLLQKWESEGG 180

Query: 181 GGVKEVERGENLTNYAESSSPSSEVETELFIGPPETRPRTFLSLN 225
            G    E GE + NYAESSSPSSEVETEL IGP    PR FLS++
Sbjct: 181 DGGVNNEGGEKMLNYAESSSPSSEVETELLIGP----PRRFLSIH 221

[Close]
BLAST of Cp4.1LG17g02550 vs. NCBI nr
Match: gi|659120339|ref|XP_008460142.1| (PREDICTED: MADS-box protein SOC1-like [Cucumis melo])

HSP 1 Score: 337.0 bits (863), Expect = 2.5e-89
Identity = 185/225 (82.22%), Postives = 200/225 (88.89%), Query Frame = 1 

Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANS 60
           MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEV LIIFSPRGKLYEFA+S
Sbjct: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDI-QLEHLNHEEAATLMKKIEQLEVSKRKMLGEDL 120
           SMQAT+ERYRK AKTKEALDPP VN+I QLEH NHEEAA+L+KKIEQLEVSKRKMLGEDL
Sbjct: 61  SMQATIERYRKRAKTKEALDPPFVNNIVQLEHFNHEEAASLIKKIEQLEVSKRKMLGEDL 120

Query: 121 GSCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAE 180
           GSCS+DELQQ+E QLEKSV KIRARK+EVFEEQIKQL+ KEK+L+ ENAKLL+KWESE  
Sbjct: 121 GSCSLDELQQLEHQLEKSVSKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGG 180

Query: 181 GGVKEVERGENLTNYAESSSPSSEVETELFIGPPETRPRTFLSLN 225
            G    E GE + NYAESSSPSSEVETEL IGP    PR FLS++
Sbjct: 181 DGGVNNEGGEKMLNYAESSSPSSEVETELLIGP----PRRFLSIH 221

[Close]
BLAST of Cp4.1LG17g02550 vs. NCBI nr
Match: gi|1000982184|ref|XP_002511767.2| (PREDICTED: MADS-box protein SOC1 isoform X1 [Ricinus communis])

HSP 1 Score: 258.1 bits (658), Expect = 1.5e-65
Identity = 147/220 (66.82%), Postives = 170/220 (77.27%), Query Frame = 1 

Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANS 60
           MVRGKTQMR IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV LI+FSPRGKLYEFA+S
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           SMQ T+ERYR+H K  +    P+  D  ++H    EA  LMKKIE LEVSKRK+LG+ LG
Sbjct: 61  SMQDTIERYRRHVKEHQTNKKPT--DENMQHQLKSEAGNLMKKIELLEVSKRKLLGQGLG 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           SC+++ELQQ+E QLEKSV  IRARK +VF+EQI+QLK KEK L AENA+L EK   +A  
Sbjct: 121 SCNLEELQQIEQQLEKSVSSIRARKNQVFKEQIEQLKEKEKQLAAENARLSEKCGVQALP 180

Query: 181 GVKEVERGENLTNYAESSSPSSEVETELFIGPPETRPRTF 221
           G+KE E         E  SP S+VETELFIGPPETR + F
Sbjct: 181 GLKEQEENRPY----EEGSPVSDVETELFIGPPETRTKRF 214

[Close]
BLAST of Cp4.1LG17g02550 vs. NCBI nr
Match: gi|3493647|gb|AAC33475.1| (transcription activator [Spuriopimpinella brachycarpa])

HSP 1 Score: 256.1 bits (653), Expect = 5.5e-65
Identity = 147/216 (68.06%), Postives = 175/216 (81.02%), Query Frame = 1 

Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANS 60
           MVRGKTQMR IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV LIIFSPRGKL+EFA+S
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLHEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           SM  T+ERYRKH K  ++ + P V ++Q  HL H E A+L KKIE LEVSKRK+LGE LG
Sbjct: 61  SMHETIERYRKHTKDVQSNNTPVVQNMQ--HLKH-ETASLAKKIELLEVSKRKLLGEGLG 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           +CSI+ELQQ+E QLEKSVC +RARK++VF+EQI+QLK KEK L A+NA LL K++ +   
Sbjct: 121 TCSINELQQIEQQLEKSVCTVRARKMQVFKEQIEQLKEKEKTLAADNAILLAKYDVQPR- 180

Query: 181 GVKEVERGENLTNYAESSSPSSEVETELFIGPPETR 217
             +  E G NLT+  E+S  +S+VETELFIGPPE R
Sbjct: 181 -QESPEDGGNLTSTTENSE-NSDVETELFIGPPEKR 210

[Close]
BLAST of Cp4.1LG17g02550 vs. NCBI nr
Match: gi|433688850|gb|AGB51145.1| (MADS box transcription factor SOC1 variant 7 [Brassica carinata])

HSP 1 Score: 252.3 bits (643), Expect = 8.0e-64
Identity = 146/220 (66.36%), Postives = 171/220 (77.73%), Query Frame = 1 

Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFANS 60
           MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV LIIFSP+ KLYEFA+S
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKAKLYEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           +MQ T++RY +H  TK+ +    V++  L+HL H EAA +MKKIEQLE SKRK+LGE +G
Sbjct: 61  NMQDTIDRYLRH--TKDRVSSKPVSEENLQHLKH-EAANMMKKIEQLEASKRKLLGEGIG 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           SCSI+ELQQ+ELQLEKSV  IRARK +VF+EQI+QLK KEK L AEN KL EKW      
Sbjct: 121 SCSIEELQQIELQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENKKLAEKW------ 180

Query: 181 GVKEVERGENLTNYA----ESSSPSSEVETELFIGPPETR 217
           G  E+E   N    +    E SSPSSEVET+LFIG P +R
Sbjct: 181 GSHEIEVWSNKNQESGRGDEESSPSSEVETQLFIGLPVSR 211

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g02550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SOC1_ARATH1.2e-6466.67MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1[more]
AGL19_ARATH5.9e-5154.63Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1[more]
AGL14_ARATH7.2e-4953.92Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2[more]
AGL42_ARATH8.8e-4752.31MADS-box protein AGL42 OS=Arabidopsis thaliana GN=AGL42 PE=2 SV=1[more]
MAD50_ORYSJ1.2e-4653.02MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 ... [more]
BLAST of Cp4.1LG17g02550 vs. TrEMBL
Match NameE-valueIdentityDescription
O81662_PIMBR3.8e-6568.06Transcription activator OS=Pimpinella brachycarpa GN=MADS1 PE=2 SV=1[more]
T1QFU1_BRACI5.5e-6466.36MADS box transcription factor SOC1 variant 7 OS=Brassica carinata GN=SOC1 PE=4 S... [more]
T1QFT7_BRACI9.5e-6466.36MADS box transcription factor SOC1 variant 8 OS=Brassica carinata GN=SOC1 PE=4 S... [more]
V9LZP8_BRACI1.2e-6366.82MADS box transcription factor SOC1 variant 4 OS=Brassica carinata PE=2 SV=1[more]
V9M0H9_BRAJU1.6e-6366.82MADS box transcription factor SOC1 variant 5 OS=Brassica juncea PE=2 SV=1[more]
BLAST of Cp4.1LG17g02550 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G45660.16.9e-6666.67 AGAMOUS-like 20[more]
AT4G22950.13.3e-5254.63 AGAMOUS-like 19[more]
AT4G11880.14.1e-5053.92 AGAMOUS-like 14[more]
AT5G62165.15.0e-4852.31 AGAMOUS-like 42[more]
AT5G51870.32.2e-4045.50 AGAMOUS-like 71[more]
BLAST of Cp4.1LG17g02550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449471671|ref|XP_004153376.1|2.2e-9082.67PREDICTED: MADS-box protein SOC1-like [Cucumis sativus][more]
gi|659120339|ref|XP_008460142.1|2.5e-8982.22PREDICTED: MADS-box protein SOC1-like [Cucumis melo][more]
gi|1000982184|ref|XP_002511767.2|1.5e-6566.82PREDICTED: MADS-box protein SOC1 isoform X1 [Ricinus communis][more]
gi|3493647|gb|AAC33475.1|5.5e-6568.06transcription activator [Spuriopimpinella brachycarpa][more]
gi|433688850|gb|AGB51145.1|8.0e-6466.36MADS box transcription factor SOC1 variant 7 [Brassica carinata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0046983protein dimerization activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR002487TF_Kbox
IPR002100TF_MADSbox
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050793 regulation of developmental process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0048731 system development
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g02550.1Cp4.1LG17g02550.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 38..59
score: 7.6E-29coord: 23..38
score: 7.6E-29coord: 3..23
score: 7.6
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 11..57
score: 1.6
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
score: 1.7
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 3..57
scor
IPR002100Transcription factor, MADS-boxPROFILEPS50066MADS_BOX_2coord: 1..61
score: 30
IPR002100Transcription factor, MADS-boxunknownSSF55455SRF-likecoord: 3..89
score: 1.18
IPR002487Transcription factor, K-boxPFAMPF01486K-boxcoord: 93..174
score: 2.8
IPR002487Transcription factor, K-boxPROFILEPS51297K_BOXcoord: 90..180
score: 14
NoneNo IPR availableunknownCoilCoilcoord: 146..173
scor
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 2..216
score: 2.7
NoneNo IPR availablePANTHERPTHR11945:SF208MADS-BOX PROTEIN SOC1coord: 2..216
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g02550Cucsa.362960Cucumber (Gy14) v1cgycpeB0954
Cp4.1LG17g02550CmaCh08G009430Cucurbita maxima (Rimu)cmacpeB916
Cp4.1LG17g02550CmoCh08G009120Cucurbita moschata (Rifu)cmocpeB853
Cp4.1LG17g02550Cla006944Watermelon (97103) v1cpewmB342
Cp4.1LG17g02550Csa6G076720Cucumber (Chinese Long) v2cpecuB323
Cp4.1LG17g02550MELO3C022515Melon (DHL92) v3.5.1cpemeB286
Cp4.1LG17g02550ClCG06G000230Watermelon (Charleston Gray)cpewcgB300
Cp4.1LG17g02550CSPI06G05710Wild cucumber (PI 183967)cpecpiB324
Cp4.1LG17g02550Lsi09G019140Bottle gourd (USVL1VR-Ls)cpelsiB250
Cp4.1LG17g02550MELO3C022515.2Melon (DHL92) v3.6.1cpemedB334
Cp4.1LG17g02550CsaV3_6G006020Cucumber (Chinese Long) v3cpecucB0405
Cp4.1LG17g02550CsGy6G005660Cucumber (Gy14) v2cgybcpeB785
Cp4.1LG17g02550Carg11097Silver-seed gourdcarcpeB1503
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g02550Cucurbita pepo (Zucchini)cpecpeB232
Cp4.1LG17g02550Cucumber (Gy14) v1cgycpeB0677
Cp4.1LG17g02550Cucurbita maxima (Rimu)cmacpeB825
Cp4.1LG17g02550Cucurbita moschata (Rifu)cmocpeB357
Cp4.1LG17g02550Cucurbita moschata (Rifu)cmocpeB778
Cp4.1LG17g02550Wild cucumber (PI 183967)cpecpiB315
Cp4.1LG17g02550Cucumber (Chinese Long) v2cpecuB313
Cp4.1LG17g02550Bottle gourd (USVL1VR-Ls)cpelsiB271
Cp4.1LG17g02550Watermelon (97103) v1cpewmB332
Cp4.1LG17g02550Melon (DHL92) v3.5.1cpemeB317
Cp4.1LG17g02550Cucumber (Gy14) v2cgybcpeB357
Cp4.1LG17g02550Melon (DHL92) v3.6.1cpemedB370
Cp4.1LG17g02550Melon (DHL92) v3.6.1cpemedB372
Cp4.1LG17g02550Silver-seed gourdcarcpeB0323
Cp4.1LG17g02550Silver-seed gourdcarcpeB0883
Cp4.1LG17g02550Cucumber (Chinese Long) v3cpecucB0384
Cp4.1LG17g02550Cucumber (Chinese Long) v3cpecucB0389
Cp4.1LG17g02550Wax gourdcpewgoB0403