CmaCh08G009430 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G009430
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	MADS-box transcription factor
Location	Cma_Chr08 : 5878385 .. 5880033 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGCAACTCTAGAGCGGTATAGAAAGCATGCAAAAACCAAAGAAGCCCTCGAGCCTCCATCGGTTAGTGATATCCAGGTTTGTCCCCAACATAATTCCTAGTTTTCACCATTTGATGATCCACATTCAATAATCTTCTGCAGTTGGAGCATCTGAATCATGAAGCAGCAGCCACCCTGATGAAGAAAATAGAGCAGCTTGAAGTTTCAAAACGGTTCTAATGACTTAATTTCTTGATTTTTCTTGGTTAAATAGTTGTTCTAATGCTGAAATCTGGGCTTTGTCTTAAAAATGTTCATAAAAAAATTGTAGGAAAATGTTGGGAGAAGATCTGGGTTCTTGCTCCATTGATGAACTTCAGGAGGTTGAACATCAGTTGGAGAAAAGTGTTTGCAAAATTCGAGCCAGAAAGGTTTTTGATTCAATCCTTTTCTTTCTCTCTCTAAATTCAATTCTCTCTCTAACCCGGATTTTTATATTACAGGTTGAAGTGTTTGAAGAACAGATTAAACAACTAAAGCACAAGGTGAAAGGATTCAAACATTCATCTGAAAAGCGTTTCCATTGGGTTTTTTTTTTTTAAAAAATGAGTCTTTGGGCTGAAATGAAATGCAGGAGAACCTCTTGGAAGCAGAAAATGCTAAGCTACTCGAAAAGGTAAACGTCTTAATTTGTAGATACTTGATAGAACAACGAACCTCTACAACGATATGATAATATTTACTTTGTTAGCAAATATTGTTGTTTTTGAGCTTCTCTTCTGAGCTTCTCTTTAGGGTTTTTAAAACGCGTCTACTAGGGAGAGATTTTCACACCTTATAAGCAATGCTTTATTCCCTCTCCCACCAATCTACCTGTTTTAGAGGCCTAGCGCCCTCGTTAGCACACCACCTATACCATTTGTAGCACACCACCTATACCATTTGTAACTTCTCTTCTCCATTGATGTGGCTCAAGATTCCCCATTAATTGGAGAGTGGAACAAAACATTCCTTATAAGGATGTAGAAACCTCTTTCTCTTTCTACTATATGTTGACAGTAGACTTGGACTATCTAGCATCTCTACCTATATACCCATGATTGTGATACTCCAACAAGATTTGTACGACCTCTATCAAAGATATATGATATTATGTTAGTTAAGCTATGTTGTTGTTCGTTCTTGACTGGATGAATCTCAGACTTTGTTCAGCTAACATGGGTATGCTTTTTCTTCATATATAGTGGGAAAGTGAGGCAGAAGGGGGAGTAAAGGAAGTAGAAAGAGGGGAGAATTTAATGAACTATACAGAAAGTAGCAGTCCAAGTTCAGAGGTAGAAACAGAGTTGTTCATTGGGCCACCTGAAACAAGGCCAAGAACATTTCTTTCCCTTAACTGATTCAATTTGTAGCCCTAATATTACTTCATGTTTATAACAATAATACTCTTTTTCTGTTCAATTTCTACTCTATAAAGCATCTCTAATGCTTGGCAGACACACACACACACAGGGAGAGATTTTGGAAAATGGTTGTAAATAATTCTCATTTTTCATCTCTTTATAGCTCTTCACAGACCTGCTGATGCTTAATTTTTTTTTTTTTTTTTTATTATTATTGAAAACATGAGTATTTAAAAATGTTTAACGAGTGACTATCGTGTTG

mRNA sequence

ATGCAGGCAACTCTAGAGCGGTATAGAAAGCATGCAAAAACCAAAGAAGCCCTCGAGCCTCCATCGGTTAGTGATATCCAGTTGGAGCATCTGAATCATGAAGCAGCAGCCACCCTGATGAAGAAAATAGAGCAGCTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGTTCTTGCTCCATTGATGAACTTCAGGAGGTTGAACATCAGTTGGAGAAAAGTGTTTGCAAAATTCGAGCCAGAAAGGTTGAAGTGTTTGAAGAACAGATTAAACAACTAAAGCACAAGGAGAACCTCTTGGAAGCAGAAAATGCTAAGCTACTCGAAAAGTGGGAAAGTGAGGCAGAAGGGGGAGTAAAGGAAGTAGAAAGAGGGGAGAATTTAATGAACTATACAGAAAGTAGCAGTCCAAGTTCAGAGGTAGAAACAGAGTTGTTCATTGGGCCACCTGAAACAAGGCCAAGAACATTTCTTTCCCTTAACTGATTCAATTTGTAGCCCTAATATTACTTCATGTTTATAACAATAATACTCTTTTTCTGTTCAATTTCTACTCTATAAAGCATCTCTAATGCTTGGCAGACACACACACACACAGGGAGAGATTTTGGAAAATGGTTGTAAATAATTCTCATTTTTCATCTCTTTATAGCTCTTCACAGACCTGCTGATGCTTAATTTTTTTTTTTTTTTTTTATTATTATTGAAAACATGAGTATTTAAAAATGTTTAACGAGTGACTATCGTGTTG

Coding sequence (CDS)

ATGCAGGCAACTCTAGAGCGGTATAGAAAGCATGCAAAAACCAAAGAAGCCCTCGAGCCTCCATCGGTTAGTGATATCCAGTTGGAGCATCTGAATCATGAAGCAGCAGCCACCCTGATGAAGAAAATAGAGCAGCTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGTTCTTGCTCCATTGATGAACTTCAGGAGGTTGAACATCAGTTGGAGAAAAGTGTTTGCAAAATTCGAGCCAGAAAGGTTGAAGTGTTTGAAGAACAGATTAAACAACTAAAGCACAAGGAGAACCTCTTGGAAGCAGAAAATGCTAAGCTACTCGAAAAGTGGGAAAGTGAGGCAGAAGGGGGAGTAAAGGAAGTAGAAAGAGGGGAGAATTTAATGAACTATACAGAAAGTAGCAGTCCAAGTTCAGAGGTAGAAACAGAGTTGTTCATTGGGCCACCTGAAACAAGGCCAAGAACATTTCTTTCCCTTAACTGA

Protein sequence

MQATLERYRKHAKTKEALEPPSVSDIQLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLGSCSIDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESEAEGGVKEVERGENLMNYTESSSPSSEVETELFIGPPETRPRTFLSLN

Homology

[Close]

BLAST of CmaCh08G009430 vs. Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.8e-33
Identity = 87/152 (57.24%), Postives = 110/152 (72.37%), Query Frame = 1


Query: 1   MQATLERYRKHAKTKEALEPPSVSDIQLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLGS 60
           MQ T++RY +H K + + +P  VS+  ++HL +EAA  +MKKIEQLE SKRK+LGE +G+
Sbjct: 62  MQDTIDRYLRHTKDRVSTKP--VSEENMQHLKYEAA-NMMKKIEQLEASKRKLLGEGIGT 121

Query: 61  CSIDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESEAEGG 120
           CSI+ELQ++E QLEKSV  IRARK +VF+EQI+QLK KE  L AEN KL EKW S  E  
Sbjct: 122 CSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSH-ESE 181

Query: 121 VKEVERGENLMNYTESSSPSSEVETELFIGPP 153
           V   +  E+     E SSPSSEVET+LFIG P
Sbjct: 182 VWSNKNQESTGRGDEESSPSSEVETQLFIGLP 209

[Close]

BLAST of CmaCh08G009430 vs. Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-19
Identity = 63/154 (40.91%), Postives = 97/154 (62.99%), Query Frame = 1


Query: 3   ATLERYRKHAKTKEALEPPSVSDIQLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLGSCS 62
           AT+ERY++  K        + +  Q      +  + L KKIEQLE+SKRK+LGE + +CS
Sbjct: 64  ATIERYQRRIKEIGNNHKRNDNSQQAR----DETSGLTKKIEQLEISKRKLLGEGIDACS 123

Query: 63  IDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESEAEGGVK 122
           I+ELQ++E+QL++S+ +IRA+K ++  E+I++LK +E  L  EN  L EKW      G  
Sbjct: 124 IEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGM---GTA 183

Query: 123 EVERGENLMNYTE-SSSPSSEVETELFIGPPETR 156
            +   ++ ++ +E +   + EVET LFIGPPETR
Sbjct: 184 TIASSQSTLSSSEVNIDDNMEVETGLFIGPPETR 210

[Close]

BLAST of CmaCh08G009430 vs. Swiss-Prot
Match: AGL42_ARATH (MADS-box protein AGL42 OS=Arabidopsis thaliana GN=AGL42 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-18
Identity = 65/157 (41.40%), Postives = 95/157 (60.51%), Query Frame = 1


Query: 1   MQATLERYRKHAKTKEALEPPSVSDIQLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLGS 60
           MQ T+ERYRK+ K  E     S   I L+ L  EA+  ++ KIE LE  KRK+LG+ + S
Sbjct: 62  MQKTIERYRKYTKDHETSNHDS--QIHLQQLKQEASH-MITKIELLEFHKRKLLGQGIAS 121

Query: 61  CSIDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEK-----WES 120
           CS++ELQE++ QL++S+ K+R RK ++F+EQ+++LK KE  L  EN KL +K     W  
Sbjct: 122 CSLEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVINPWRG 181

Query: 121 EAEGGVKEVERGENLMNYTESSSPSSEVETELFIGPP 153
            +    +E  +  +L         + EVET+LFIG P
Sbjct: 182 SSTDQQQEKYKVIDL---------NLEVETDLFIGLP 206

[Close]

BLAST of CmaCh08G009430 vs. Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-17
Identity = 59/152 (38.82%), Postives = 92/152 (60.53%), Query Frame = 1


Query: 4   TLERYRKHAKTKEALEPPSVSDIQLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLGSCSI 63
           T+ERY+K  +   +    + +  Q    + +    L +KIE LE+S RKM+GE L + SI
Sbjct: 66  TVERYQKRIQDLGSNHKRNDNSQQ----SKDETYGLARKIEHLEISTRKMMGEGLDASSI 125

Query: 64  DELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESEAEGGVKE 123
           +ELQ++E+QL++S+ KIRA+K ++  E+ ++LK KE  L AEN  L+EK E +  G +  
Sbjct: 126 EELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQGRGIIGR 185

Query: 124 VERGENLMNYTESSSPSSEVETELFIGPPETR 156
           +    +  +  +      EV T+LFIGPPETR
Sbjct: 186 ISSSSS-TSELDIDDNEMEVVTDLFIGPPETR 212

[Close]

BLAST of CmaCh08G009430 vs. Swiss-Prot
Match: AGL71_ARATH (MADS-box protein AGL71 OS=Arabidopsis thaliana GN=AGL71 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.4e-16
Identity = 64/158 (40.51%), Postives = 91/158 (57.59%), Query Frame = 1


Query: 1   MQATLERYRKHAKTKEALEPPSVSDIQLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLGS 60
           M+  ++RY K +      E P V +  L+ L  E    ++KKI+ LEV  RK+LG+ L S
Sbjct: 62  MEKIIDRYGKFSNAFYVAERPQV-ERYLQELKMEIDR-MVKKIDLLEVHHRKLLGQGLDS 121

Query: 61  CSIDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESEAEGG 120
           CS+ ELQE++ Q+EKS+  +R+RK E++ +Q+K+LK KE  L  E  +LLE         
Sbjct: 122 CSVTELQEIDTQIEKSLRIVRSRKAELYADQLKKLKEKERELLNERKRLLE--------- 181

Query: 121 VKEVERGENLMNYTES---SSPSSEVETELFIGPPETR 156
             EV    +    TE    +  SSEVET+LFIG P TR
Sbjct: 182 --EVNMHHSSKGNTEGGHRTKHSSEVETDLFIGLPVTR 206

[Close]

BLAST of CmaCh08G009430 vs. TrEMBL
Match: A0A0A0K9Q9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G076720 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.1e-56
Identity = 123/164 (75.00%), Postives = 140/164 (85.37%), Query Frame = 1


Query: 1   MQATLERYRKHAKTKEALEPPSVSDI-QLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLG 60
           MQAT+ERYRK AK KEAL+PP V++I QLEHLNHE AA+L+KKIEQLEVSKRKMLGEDLG
Sbjct: 1   MQATIERYRKRAKAKEALDPPFVNNIVQLEHLNHEEAASLIKKIEQLEVSKRKMLGEDLG 60

Query: 61  SCSIDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESEAEG 120
           SCS+DELQ++EHQLEKSVCKIRARK+EVFEEQIKQLK KE +L+ ENAKLL+KWESE   
Sbjct: 61  SCSLDELQQLEHQLEKSVCKIRARKIEVFEEQIKQLKQKEKVLQDENAKLLQKWESEGGD 120

Query: 121 GVKEVERGENLMNYTESSSPSSEVETELFIGPPETRPRTFLSLN 164
           G    E GE ++NY ESSSPSSEVETEL IGP    PR FLS++
Sbjct: 121 GGVNNEGGEKMLNYAESSSPSSEVETELLIGP----PRRFLSIH 160

[Close]

BLAST of CmaCh08G009430 vs. TrEMBL
Match: T1QFT7_BRACI (MADS box transcription factor SOC1 variant 8 OS=Brassica carinata GN=SOC1 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.3e-33
Identity = 92/159 (57.86%), Postives = 112/159 (70.44%), Query Frame = 1


Query: 1   MQATLERYRKHAKTKEALEPPSVSDIQLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLGS 60
           MQ T++RY +H K + + +P  VS+  L+HL HEAA  +MKKIEQLE SKRK+LGE +GS
Sbjct: 62  MQDTIDRYLRHTKDRVSTKP--VSEENLQHLKHEAA-NMMKKIEQLEASKRKLLGEGIGS 121

Query: 61  CSIDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESEAEGG 120
           CSI+ELQ++E QLEKSV  IRARK +VF+EQI+QLK KE  L AEN KL EKW      G
Sbjct: 122 CSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENKKLAEKW------G 181

Query: 121 VKEVERGENLMNYT----ESSSPSSEVETELFIGPPETR 156
             E+E   N    +    E SSPSSEVETELFIG P +R
Sbjct: 182 SHEIEVRSNKNQESGRGDEESSPSSEVETELFIGLPVSR 211

[Close]

BLAST of CmaCh08G009430 vs. TrEMBL
Match: O81662_PIMBR (Transcription activator OS=Pimpinella brachycarpa GN=MADS1 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-32
Identity = 89/155 (57.42%), Postives = 114/155 (73.55%), Query Frame = 1


Query: 1   MQATLERYRKHAKTKEALEPPSVSDIQLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLGS 60
           M  T+ERYRKH K  ++   P V ++Q  HL HE A+ L KKIE LEVSKRK+LGE LG+
Sbjct: 62  MHETIERYRKHTKDVQSNNTPVVQNMQ--HLKHETAS-LAKKIELLEVSKRKLLGEGLGT 121

Query: 61  CSIDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESEAEGG 120
           CSI+ELQ++E QLEKSVC +RARK++VF+EQI+QLK KE  L A+NA LL K++ +    
Sbjct: 122 CSINELQQIEQQLEKSVCTVRARKMQVFKEQIEQLKEKEKTLAADNAILLAKYDVQPR-- 181

Query: 121 VKEVERGENLMNYTESSSPSSEVETELFIGPPETR 156
            +  E G NL + TE+S  +S+VETELFIGPPE R
Sbjct: 182 QESPEDGGNLTSTTENSE-NSDVETELFIGPPEKR 210

[Close]

BLAST of CmaCh08G009430 vs. TrEMBL
Match: A0A078JU96_BRANA (BnaC04g53290D protein OS=Brassica napus GN=BnaC04g53290D PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-32
Identity = 91/156 (58.33%), Postives = 110/156 (70.51%), Query Frame = 1


Query: 1   MQATLERYRKHAKTKEALEPPSVSDIQLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLGS 60
           MQ T++RY +H K + + +P  VS+  L+HL HEAA  +MKKIEQLE SKRK+LGE +GS
Sbjct: 62  MQDTIDRYLRHTKDRVSTKP--VSEENLQHLKHEAA-NMMKKIEQLEASKRKLLGEGIGS 121

Query: 61  CSIDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESEAEGG 120
           CSI+ELQ++E QLEKSV  IRARK +VF+EQI+QLK KE  L AEN KL EKW      G
Sbjct: 122 CSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENKKLAEKW------G 181

Query: 121 VKEVERGENLMNYT----ESSSPSSEVETELFIGPP 153
             E+E   N    +    E SSPSSEVETELFIG P
Sbjct: 182 SHEIEVRSNKNQESGRGDEESSPSSEVETELFIGLP 208

[Close]

BLAST of CmaCh08G009430 vs. TrEMBL
Match: I6SJF1_BRANA (MADS-box protein AGL20/SOC1 OS=Brassica napus GN=AGL20 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-32
Identity = 91/156 (58.33%), Postives = 110/156 (70.51%), Query Frame = 1


Query: 1   MQATLERYRKHAKTKEALEPPSVSDIQLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLGS 60
           MQ T++RY +H K + + +P  VS+  L+HL HEAA  +MKKIEQLE SKRK+LGE +GS
Sbjct: 62  MQDTIDRYLRHTKDRVSTKP--VSEENLQHLKHEAA-NMMKKIEQLEASKRKLLGEGIGS 121

Query: 61  CSIDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESEAEGG 120
           CSI+ELQ++E QLEKSV  IRARK +VF+EQI+QLK KE  L AEN KL EKW      G
Sbjct: 122 CSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENKKLAEKW------G 181

Query: 121 VKEVERGENLMNYT----ESSSPSSEVETELFIGPP 153
             E+E   N    +    E SSPSSEVETELFIG P
Sbjct: 182 SHEIEVWSNKNQESGRGDEDSSPSSEVETELFIGLP 208

[Close]

BLAST of CmaCh08G009430 vs. TAIR10
Match: AT2G45660.1 (AT2G45660.1 AGAMOUS-like 20)

HSP 1 Score: 143.7 bits (361), Expect = 1.0e-34
Identity = 87/152 (57.24%), Postives = 110/152 (72.37%), Query Frame = 1


Query: 1   MQATLERYRKHAKTKEALEPPSVSDIQLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLGS 60
           MQ T++RY +H K + + +P  VS+  ++HL +EAA  +MKKIEQLE SKRK+LGE +G+
Sbjct: 62  MQDTIDRYLRHTKDRVSTKP--VSEENMQHLKYEAA-NMMKKIEQLEASKRKLLGEGIGT 121

Query: 61  CSIDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESEAEGG 120
           CSI+ELQ++E QLEKSV  IRARK +VF+EQI+QLK KE  L AEN KL EKW S  E  
Sbjct: 122 CSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSH-ESE 181

Query: 121 VKEVERGENLMNYTESSSPSSEVETELFIGPP 153
           V   +  E+     E SSPSSEVET+LFIG P
Sbjct: 182 VWSNKNQESTGRGDEESSPSSEVETQLFIGLP 209

[Close]

BLAST of CmaCh08G009430 vs. TAIR10
Match: AT4G22950.1 (AT4G22950.1 AGAMOUS-like 19)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-20
Identity = 63/154 (40.91%), Postives = 97/154 (62.99%), Query Frame = 1


Query: 3   ATLERYRKHAKTKEALEPPSVSDIQLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLGSCS 62
           AT+ERY++  K        + +  Q      +  + L KKIEQLE+SKRK+LGE + +CS
Sbjct: 64  ATIERYQRRIKEIGNNHKRNDNSQQAR----DETSGLTKKIEQLEISKRKLLGEGIDACS 123

Query: 63  IDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESEAEGGVK 122
           I+ELQ++E+QL++S+ +IRA+K ++  E+I++LK +E  L  EN  L EKW      G  
Sbjct: 124 IEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGM---GTA 183

Query: 123 EVERGENLMNYTE-SSSPSSEVETELFIGPPETR 156
            +   ++ ++ +E +   + EVET LFIGPPETR
Sbjct: 184 TIASSQSTLSSSEVNIDDNMEVETGLFIGPPETR 210

[Close]

BLAST of CmaCh08G009430 vs. TAIR10
Match: AT5G62165.1 (AT5G62165.1 AGAMOUS-like 42)

HSP 1 Score: 94.4 bits (233), Expect = 7.1e-20
Identity = 65/157 (41.40%), Postives = 95/157 (60.51%), Query Frame = 1


Query: 1   MQATLERYRKHAKTKEALEPPSVSDIQLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLGS 60
           MQ T+ERYRK+ K  E     S   I L+ L  EA+  ++ KIE LE  KRK+LG+ + S
Sbjct: 62  MQKTIERYRKYTKDHETSNHDS--QIHLQQLKQEASH-MITKIELLEFHKRKLLGQGIAS 121

Query: 61  CSIDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEK-----WES 120
           CS++ELQE++ QL++S+ K+R RK ++F+EQ+++LK KE  L  EN KL +K     W  
Sbjct: 122 CSLEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVINPWRG 181

Query: 121 EAEGGVKEVERGENLMNYTESSSPSSEVETELFIGPP 153
            +    +E  +  +L         + EVET+LFIG P
Sbjct: 182 SSTDQQQEKYKVIDL---------NLEVETDLFIGLP 206

[Close]

BLAST of CmaCh08G009430 vs. TAIR10
Match: AT4G11880.1 (AT4G11880.1 AGAMOUS-like 14)

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-18
Identity = 59/152 (38.82%), Postives = 92/152 (60.53%), Query Frame = 1


Query: 4   TLERYRKHAKTKEALEPPSVSDIQLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLGSCSI 63
           T+ERY+K  +   +    + +  Q    + +    L +KIE LE+S RKM+GE L + SI
Sbjct: 66  TVERYQKRIQDLGSNHKRNDNSQQ----SKDETYGLARKIEHLEISTRKMMGEGLDASSI 125

Query: 64  DELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESEAEGGVKE 123
           +ELQ++E+QL++S+ KIRA+K ++  E+ ++LK KE  L AEN  L+EK E +  G +  
Sbjct: 126 EELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQGRGIIGR 185

Query: 124 VERGENLMNYTESSSPSSEVETELFIGPPETR 156
           +    +  +  +      EV T+LFIGPPETR
Sbjct: 186 ISSSSS-TSELDIDDNEMEVVTDLFIGPPETR 212

[Close]

BLAST of CmaCh08G009430 vs. TAIR10
Match: AT5G51870.3 (AT5G51870.3 AGAMOUS-like 71)

HSP 1 Score: 84.0 bits (206), Expect = 9.6e-17
Identity = 62/161 (38.51%), Postives = 94/161 (58.39%), Query Frame = 1


Query: 1   MQATLERYRKHAKTKEALEPPSVSDIQLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLGS 60
           M+  ++RY K +      E P V +  L+ L  E    ++KKI+ LEV  RK+LG+ L S
Sbjct: 62  MEKIIDRYGKFSNAFYVAERPQV-ERYLQELKMEIDR-MVKKIDLLEVHHRKLLGQGLDS 121

Query: 61  CSIDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESE---- 120
           CS+ ELQE++ Q+EKS+  +R+RK E++ +Q+K+LK KE  L  E  +LLE+   E    
Sbjct: 122 CSVTELQEIDTQIEKSLRIVRSRKAELYADQLKKLKEKERELLNERKRLLEEQNRERLMR 181

Query: 121 --AEGGVKEVERGENLMNYTESSSPSSEVETELFIGPPETR 156
                 ++  ++G     +   +  SSEVET+LFIG P TR
Sbjct: 182 PVVPATLQICDKGNTEGGH--RTKHSSEVETDLFIGLPVTR 218

[Close]

BLAST of CmaCh08G009430 vs. NCBI nr
Match: gi|449471671|ref|XP_004153376.1| (PREDICTED: MADS-box protein SOC1-like [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 4.4e-56
Identity = 123/164 (75.00%), Postives = 140/164 (85.37%), Query Frame = 1


Query: 1   MQATLERYRKHAKTKEALEPPSVSDI-QLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLG 60
           MQAT+ERYRK AK KEAL+PP V++I QLEHLNHE AA+L+KKIEQLEVSKRKMLGEDLG
Sbjct: 62  MQATIERYRKRAKAKEALDPPFVNNIVQLEHLNHEEAASLIKKIEQLEVSKRKMLGEDLG 121

Query: 61  SCSIDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESEAEG 120
           SCS+DELQ++EHQLEKSVCKIRARK+EVFEEQIKQLK KE +L+ ENAKLL+KWESE   
Sbjct: 122 SCSLDELQQLEHQLEKSVCKIRARKIEVFEEQIKQLKQKEKVLQDENAKLLQKWESEGGD 181

Query: 121 GVKEVERGENLMNYTESSSPSSEVETELFIGPPETRPRTFLSLN 164
           G    E GE ++NY ESSSPSSEVETEL IGP    PR FLS++
Sbjct: 182 GGVNNEGGEKMLNYAESSSPSSEVETELLIGP----PRRFLSIH 221

[Close]

BLAST of CmaCh08G009430 vs. NCBI nr
Match: gi|700191019|gb|KGN46223.1| (hypothetical protein Csa_6G076720 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 4.4e-56
Identity = 123/164 (75.00%), Postives = 140/164 (85.37%), Query Frame = 1


Query: 1   MQATLERYRKHAKTKEALEPPSVSDI-QLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLG 60
           MQAT+ERYRK AK KEAL+PP V++I QLEHLNHE AA+L+KKIEQLEVSKRKMLGEDLG
Sbjct: 1   MQATIERYRKRAKAKEALDPPFVNNIVQLEHLNHEEAASLIKKIEQLEVSKRKMLGEDLG 60

Query: 61  SCSIDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESEAEG 120
           SCS+DELQ++EHQLEKSVCKIRARK+EVFEEQIKQLK KE +L+ ENAKLL+KWESE   
Sbjct: 61  SCSLDELQQLEHQLEKSVCKIRARKIEVFEEQIKQLKQKEKVLQDENAKLLQKWESEGGD 120

Query: 121 GVKEVERGENLMNYTESSSPSSEVETELFIGPPETRPRTFLSLN 164
           G    E GE ++NY ESSSPSSEVETEL IGP    PR FLS++
Sbjct: 121 GGVNNEGGEKMLNYAESSSPSSEVETELLIGP----PRRFLSIH 160

[Close]

BLAST of CmaCh08G009430 vs. NCBI nr
Match: gi|659120339|ref|XP_008460142.1| (PREDICTED: MADS-box protein SOC1-like [Cucumis melo])

HSP 1 Score: 221.5 bits (563), Expect = 1.1e-54
Identity = 121/164 (73.78%), Postives = 139/164 (84.76%), Query Frame = 1


Query: 1   MQATLERYRKHAKTKEALEPPSVSDI-QLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLG 60
           MQAT+ERYRK AKTKEAL+PP V++I QLEH NHE AA+L+KKIEQLEVSKRKMLGEDLG
Sbjct: 62  MQATIERYRKRAKTKEALDPPFVNNIVQLEHFNHEEAASLIKKIEQLEVSKRKMLGEDLG 121

Query: 61  SCSIDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESEAEG 120
           SCS+DELQ++EHQLEKSV KIRARK+EVFEEQIKQL+ KE +L+ ENAKLL+KWESE   
Sbjct: 122 SCSLDELQQLEHQLEKSVSKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGGD 181

Query: 121 GVKEVERGENLMNYTESSSPSSEVETELFIGPPETRPRTFLSLN 164
           G    E GE ++NY ESSSPSSEVETEL IGP    PR FLS++
Sbjct: 182 GGVNNEGGEKMLNYAESSSPSSEVETELLIGP----PRRFLSIH 221

[Close]

BLAST of CmaCh08G009430 vs. NCBI nr
Match: gi|433688853|gb|AGB51146.1| (MADS box transcription factor SOC1 variant 8 [Brassica carinata])

HSP 1 Score: 148.7 bits (374), Expect = 9.0e-33
Identity = 92/159 (57.86%), Postives = 112/159 (70.44%), Query Frame = 1


Query: 1   MQATLERYRKHAKTKEALEPPSVSDIQLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLGS 60
           MQ T++RY +H K + + +P  VS+  L+HL HEAA  +MKKIEQLE SKRK+LGE +GS
Sbjct: 62  MQDTIDRYLRHTKDRVSTKP--VSEENLQHLKHEAA-NMMKKIEQLEASKRKLLGEGIGS 121

Query: 61  CSIDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESEAEGG 120
           CSI+ELQ++E QLEKSV  IRARK +VF+EQI+QLK KE  L AEN KL EKW      G
Sbjct: 122 CSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENKKLAEKW------G 181

Query: 121 VKEVERGENLMNYT----ESSSPSSEVETELFIGPPETR 156
             E+E   N    +    E SSPSSEVETELFIG P +R
Sbjct: 182 SHEIEVRSNKNQESGRGDEESSPSSEVETELFIGLPVSR 211

[Close]

BLAST of CmaCh08G009430 vs. NCBI nr
Match: gi|3493647|gb|AAC33475.1| (transcription activator [Spuriopimpinella brachycarpa])

HSP 1 Score: 147.5 bits (371), Expect = 2.0e-32
Identity = 89/155 (57.42%), Postives = 114/155 (73.55%), Query Frame = 1


Query: 1   MQATLERYRKHAKTKEALEPPSVSDIQLEHLNHEAAATLMKKIEQLEVSKRKMLGEDLGS 60
           M  T+ERYRKH K  ++   P V ++Q  HL HE A+ L KKIE LEVSKRK+LGE LG+
Sbjct: 62  MHETIERYRKHTKDVQSNNTPVVQNMQ--HLKHETAS-LAKKIELLEVSKRKLLGEGLGT 121

Query: 61  CSIDELQEVEHQLEKSVCKIRARKVEVFEEQIKQLKHKENLLEAENAKLLEKWESEAEGG 120
           CSI+ELQ++E QLEKSVC +RARK++VF+EQI+QLK KE  L A+NA LL K++ +    
Sbjct: 122 CSINELQQIEQQLEKSVCTVRARKMQVFKEQIEQLKEKEKTLAADNAILLAKYDVQPR-- 181

Query: 121 VKEVERGENLMNYTESSSPSSEVETELFIGPPETR 156
            +  E G NL + TE+S  +S+VETELFIGPPE R
Sbjct: 182 QESPEDGGNLTSTTENSE-NSDVETELFIGPPEKR 210

The following BLAST results are available for this feature:

BLAST of CmaCh08G009430 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SOC1_ARATH	1.8e-33	57.24	MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1	[more]
AGL19_ARATH	2.0e-19	40.91	Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1	[more]
AGL42_ARATH	1.3e-18	41.40	MADS-box protein AGL42 OS=Arabidopsis thaliana GN=AGL42 PE=2 SV=1	[more]
AGL14_ARATH	1.8e-17	38.82	Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2	[more]
AGL71_ARATH	3.4e-16	40.51	MADS-box protein AGL71 OS=Arabidopsis thaliana GN=AGL71 PE=2 SV=1	[more]

BLAST of CmaCh08G009430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9Q9_CUCSA	3.1e-56	75.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G076720 PE=4 SV=1	[more]
T1QFT7_BRACI	6.3e-33	57.86	MADS box transcription factor SOC1 variant 8 OS=Brassica carinata GN=SOC1 PE=4 S...	[more]
O81662_PIMBR	1.4e-32	57.42	Transcription activator OS=Pimpinella brachycarpa GN=MADS1 PE=2 SV=1	[more]
A0A078JU96_BRANA	1.4e-32	58.33	BnaC04g53290D protein OS=Brassica napus GN=BnaC04g53290D PE=4 SV=1	[more]
I6SJF1_BRANA	1.4e-32	58.33	MADS-box protein AGL20/SOC1 OS=Brassica napus GN=AGL20 PE=2 SV=1	[more]

BLAST of CmaCh08G009430 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45660.1	1.0e-34	57.24	AGAMOUS-like 20	[more]
AT4G22950.1	1.1e-20	40.91	AGAMOUS-like 19	[more]
AT5G62165.1	7.1e-20	41.40	AGAMOUS-like 42	[more]
AT4G11880.1	1.0e-18	38.82	AGAMOUS-like 14	[more]
AT5G51870.3	9.6e-17	38.51	AGAMOUS-like 71	[more]

BLAST of CmaCh08G009430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449471671\|ref\|XP_004153376.1\|	4.4e-56	75.00	PREDICTED: MADS-box protein SOC1-like [Cucumis sativus]	[more]
gi\|700191019\|gb\|KGN46223.1\|	4.4e-56	75.00	hypothetical protein Csa_6G076720 [Cucumis sativus]	[more]
gi\|659120339\|ref\|XP_008460142.1\|	1.1e-54	73.78	PREDICTED: MADS-box protein SOC1-like [Cucumis melo]	[more]
gi\|433688853\|gb\|AGB51146.1\|	9.0e-33	57.86	MADS box transcription factor SOC1 variant 8 [Brassica carinata]	[more]
gi\|3493647\|gb\|AAC33475.1\|	2.0e-32	57.42	transcription activator [Spuriopimpinella brachycarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002487	TF_Kbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G009430.1	CmaCh08G009430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 30..113 score: 4.7
IPR002487	Transcription factor, K-box	PROFILE	PS51297	K_BOX	coord: 29..119 score: 13
None	No IPR available	unknown	Coil	Coil	coord: 85..112 scor
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 1..155 score: 1.9
None	No IPR available	PANTHER	PTHR11945:SF208	MADS-BOX PROTEIN SOC1	coord: 1..155 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh08G009430	Cucsa.362960	Cucumber (Gy14) v1	cgycmaB1013
CmaCh08G009430	Cla006944	Watermelon (97103) v1	cmawmB874
CmaCh08G009430	Csa6G076720	Cucumber (Chinese Long) v2	cmacuB895
CmaCh08G009430	ClCG06G000230	Watermelon (Charleston Gray)	cmawcgB801
CmaCh08G009430	CSPI06G05710	Wild cucumber (PI 183967)	cmacpiB915
CmaCh08G009430	CmoCh08G009120	Cucurbita moschata (Rifu)	cmacmoB912
CmaCh08G009430	Lsi09G019140	Bottle gourd (USVL1VR-Ls)	cmalsiB818
CmaCh08G009430	Cp4.1LG17g02550	Cucurbita pepo (Zucchini)	cmacpeB916
CmaCh08G009430	MELO3C022515.2	Melon (DHL92) v3.6.1	cmamedB920
CmaCh08G009430	CsaV3_6G006020	Cucumber (Chinese Long) v3	cmacucB1065
CmaCh08G009430	Cla97C06G109510	Watermelon (97103) v2	cmawmbB918
CmaCh08G009430	CsGy6G005660	Cucumber (Gy14) v2	cgybcmaB864
CmaCh08G009430	CsGy3G016560	Cucumber (Gy14) v2	cgybcmaB463
CmaCh08G009430	Carg11097	Silver-seed gourd	carcmaB1495

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G009430	Watermelon (97103) v2	cmawmbB915
CmaCh08G009430	Cucurbita maxima (Rimu)	cmacmaB299
CmaCh08G009430	Cucurbita maxima (Rimu)	cmacmaB373
CmaCh08G009430	Cucurbita maxima (Rimu)	cmacmaB359
CmaCh08G009430	Cucurbita maxima (Rimu)	cmacmaB556
CmaCh08G009430	Cucumber (Gy14) v1	cgycmaB0733
CmaCh08G009430	Cucurbita moschata (Rifu)	cmacmoB885
CmaCh08G009430	Cucurbita moschata (Rifu)	cmacmoB886
CmaCh08G009430	Cucurbita moschata (Rifu)	cmacmoB887
CmaCh08G009430	Cucurbita moschata (Rifu)	cmacmoB911
CmaCh08G009430	Wild cucumber (PI 183967)	cmacpiB906
CmaCh08G009430	Cucumber (Chinese Long) v2	cmacuB888
CmaCh08G009430	Melon (DHL92) v3.5.1	cmameB822
CmaCh08G009430	Melon (DHL92) v3.5.1	cmameB851
CmaCh08G009430	Melon (DHL92) v3.5.1	cmameB853
CmaCh08G009430	Watermelon (Charleston Gray)	cmawcgB798
CmaCh08G009430	Watermelon (97103) v1	cmawmB870
CmaCh08G009430	Watermelon (97103) v1	cmawmB872
CmaCh08G009430	Cucurbita pepo (Zucchini)	cmacpeB895
CmaCh08G009430	Bottle gourd (USVL1VR-Ls)	cmalsiB836
CmaCh08G009430	Cucumber (Gy14) v2	cgybcmaB459
CmaCh08G009430	Melon (DHL92) v3.6.1	cmamedB951
CmaCh08G009430	Melon (DHL92) v3.6.1	cmamedB954
CmaCh08G009430	Silver-seed gourd	carcmaB0321
CmaCh08G009430	Silver-seed gourd	carcmaB0879
CmaCh08G009430	Cucumber (Chinese Long) v3	cmacucB1053
CmaCh08G009430	Cucumber (Chinese Long) v3	cmacucB1060