CmoCh08G009120 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G009120
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	MADS box transcription factor 5
Location	Cmo_Chr08 : 5937954 .. 5944012 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGTAAGCTTAGCTAACAACTCCATTTCACTCTCTCTCTCTCTCTCTGACTTTTCTCCCCATTTCCATTTCCATTTCCATTTCCATTCGCTTCCCCGTTCGTGATTCTCCTCTTATCCTCCTCCTCTCCTCATTCCATTTTTTTCCCAAATCAAGAAACTTAGGATTGGATGAATCACCCTCCTTTCTCTCTCCTCCTCTCTCTCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTCCTCCTTTAGCTTTTGGGTACTCTAATTCCTTTCCAAATATTCCTCCTCTCCCTTTTTTAGCTTTCTCCAGCAAATTTGTAAAGTGGGTTTGAAACTACTCCACAAAAGGAAAGGTGGGTTTGCTTTGTTTTCCTCCTCTCTCCTTTGTGTTCTTCAAAATTTGTTTCTGATTCAACCAAAATAGCCCCTCTGCCCCCTTTTCTCCTTCTGGGTTTTCAGGTTTCTGGGGTTTTCTGTTGCTTTTAGATTGGTTCTGCCCTTTTGTGCTTCTATTTCAAGGTTTTCTTGTCTTCTTCTGTTTTTTTCTCTTAGTTTTTGTGTTTAGAGGGGGAGATTTCAGTGCTTCTGCTCCTTGTTTGATTACACTTTTGTTTCCTTCTGTGGCCTTCCCTTCTTTTCTTGATCTATAAATTCATCTTTTCCTTTGTGGGTTTCTTGAGATCCATCTGTGTGTAAGGGTTTATAGTGTTATTTAGGGGTAATTCCTCTATTTTTTAGTGTAAAGAGGTTTCAAATCGTGAGAAAATGGTGAGAGGGAAGACCCAGATGAGGTTAATTGAAAACGCAACAAGCAGGCAAGTCACCTTCTCCAAGAGGCGAAATGGGTTGATGAAAAAAGCCTTTGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCTAGAGGAAAGCTTTATGAATTTGCAAACTCAAGGTACTCTTAACAACTGCTTTTGCTCCAATCCATTCAGATTGTATGGCTTTAATCTTGATCTGCCTATGAATCTTTCCATTTATGAAGGATTTCTTATAGGTCTTAAGTAGCCTGGTTTTTTGCTGTTGTTTTCAATGAAACTATTGGGAGAAGTGAAAAGGGTTTGTACTATATAACCATAGTTTAAGCACTCATACTGTTGATTACTGTTTGGTTTATATTAATTTATCAGTTGATTCCTTATTTAGATTATGATCACACCCAAAAGCCTGCAATGGCTGCTCCTTTTTAGAACCCATGTCTCAGTTTAAGGATTTATCTTATTTTTCTTCATGTCCCAAGAACATTAATATTTTCAAATGTCTAAACTGACCATAAAACTTTAGAGTTTTCTAAGAAATGATATTGTATTTTTGTCATTTGCCACTCTTGACATTCCTATAATAATTGTGTTTTTCCCTTTCAGCTTGTTTTTTTTTATTGTTACAACATTTTAACGTTGTTGATAATTATTGGATGTTCTTGGATTTGTGTTCTGTGTTCTATTACTTTTGTCTAGGTTTTGTTCCTAATGGTGGAGAAGATTATTGCATGCATGCAATATAGAAAGATTTGTATGTTCATTCAGTAGTTTACTGTGTTCATATCATTTTTTTTTTTTGTTTTTCATTCCCAGTTTTTGCTGAATAGATTGGTTTTCATATGTTATTTGTGACATCTAAGGTAGTTGTTGCTTTCAATCCTAGTTGCTATATGGATGGAGATTGGTTCTATATTCTTTTGGAGTGAGATTTCTCCAATAAAAAACTAAAAAAAAAAAAAAAAAAATTATATTATAAATTTACTCCGATATGAGATAGGTCTCTAAACTTTAAAAAGTTTCTAATAGGTAGGAGTATACATCTAACCCACTAACCCGAGAACCCAACCTGAATTATAAGGGTTGAATTGGGTTTAAAAGGATTTTTCGATTTGGGATGGATTCGTTTTTTGGAACCTAATCTAGTTTAGGTTGGGATTCGAAATTCAAATTATTGGGACAAACCGAACCAACTCAAAAGCCTAAAAAAAAAAAAGAAAATAAAATAGGTCCAAACCCACATAGCACAAGCCCCACGCAGTTCAAGCCCATGAGTCATTGTCTGCGTCTGCCCCTACCTCGAGGGTAACTAGGTATGTAAAATGAAGTCTTGACTCTCGCCCTCGCAATCTTACCACTCACATCACAACGTTCGTCTTCATCGTTCGACTCATCTTTTTGTGTGTTGTCGTTCGACTTCTCAGTTCTCATCTCATTTTCGTCTCGTCTCTGTGTCGTTGGATGTCGATGTTGCTCGCCTCTTTACTTCTCTGTTGGACTCTCTTCTCAGTTCTCATTTCTTTGCTTGACCTTGTCTGTGTTTCTTGTCGGATGTCGTCACCGAGTATCTCTCTGCTCAACACTCTGTTCCATTTCTGTCGGGCTTCTCCACACTCTCTACTCGGCAAAATTTTGGAGCAAGCTTGAACCCTCAGGTTGGGTTGTGAAAATTTTCGAGTCCAACCAACTCAAACTTTTGGATTGGTCCAAAAAAATCCTCAACACAATTTAACCCAACTTGGACTACGTACCCCCTACTAATAGATCTCTAAACTTTTAATTTTATATTTAATATATCCTTGAACTCTAATAAGTCCCTAAACTAAACTTTCGATTTTGTGTGTGTTAAATCTTTGAACTTTCAACTTTGTGTTAAATACAACACTCAATTTATTCAACATTTTTCAAATTCATGAACCTCTGCAAAACAAAAATAAAGCTTTTATGTACTGTTAGATCCAAAATTTAATTTCATGTATAATAAATTTATTGATTTTAAATAATGTTGAACATATCGAGGATTTTTAGATATATAATTGAAAATTTAAGACTTATTAAATACTTTTTAAAGTTTAGAGACGTATAAGACAAGCTAATTTAAATTTAAGGTCAAAAAAGGGTTTGGTTATAATCTCCCAACTTGCCGTCCAAAGTCCTAACAACTTAGTTACTTCTATGATTTTGTTCACTAAGTTTTTATTGGACGAAAAGAAAAAGCATTATCTAGACTGCTCTTAGTGGGTCCTAAATTTTGTAGCCAATTTTAAGGATTGTTTTATAGATTTGTCATCCCAAGAGTTAGTGTTAACCTCAAAGGTAGGTCTTAGAAGCATAGGTTCATGATTAGCAACCCGTCTATTACACTCAATTTTCATACCTATTTATGATGATGAGTACAGACGTGTACACTATGATGATGATCATCATATCTTGCATGATATTCGAAGTTTATTTTACCTCCGAACGTCGGTGGACACAAAGGGTGTGCGAATTGCTTGATGGGTTCATGTGTGGGTTGTGCGTAGGGAAATACTACGCATCCAATTTGTCGGGACTGGAGGATACATTTTAAATGATATGTCCCTGATCATGATTGCATGTGTTTGCATTCCCTGATCCCAATAGCGGGGTCACTTATGTGCTACTTCTATATTTAAGGCAAAGGCAACCCACCCCTGTACGGTTGATAGTGGCATCACAATTAAAGACCATAATACATGCATAGGCTAGTTTCTTTTAATTTTGTAGATCTTAGGTTAGTACAGGACATTACTAGTTTTATATTTACTTATGTTTATTTTAATTTTTGCTCGGTATGGTTTTAAGATATTTTTCTTAAACATGTAAGTCCATGACATTGTTTTATGAAATCGTTTTAAATGAGTACTTCCGCACAAAATATTACGTCATGCATATGGTAGCGTCTTTAAGCTAGTAGAAAACTAGGATCGTTACAGTTGGTATCAGAGTTTTAGGTTATAGATTATGTAAACTAGTCTACAAAGTAGACTTGACTTGTTCTATGGTCCCACCATCGATGTCCCATCGCCGTCAAGTTGTCATGCACAACATGTTATGTTACGAAGATGGTAACTATTTTAGGTCAGAAGAAATATACCCAAATTGTATCTAAGAAGTTTTGTAGGTAGATTACGATAAAATCTAAACCTAACAATAACTTGTTCCTTGTGATCATAACTCCAAGTCTTTAATGTTTCTATTCAGGGTCGTGGTTCTTGTCAAGAACTTATTGAATCTATCGTTTGGGCTCTTATTAAATTAAAAGTTTCTCCTACTACTCAGTCTAGAATCTTGAGTATTATCCAACAACATGCTGTAAGAGTAGCCCATTATCTTTCGGGTGAAATTGCCACAATATGAACGTTATTCTTAGCAACAATTATTGCAGTCGAATAATGGTTAGGAGGGTTTGAAAGGCATTATGGCACTAAGATTTTCAAGGCTTAGCTTAGGACCCCACTACTCGTTGTATTTAGTATGAAGACTCACAGAAGAAATACGGTGATGGGTCGATATAGGAAATGAACAGTAAAGCAATGTGAATTTTGTGTGGGATCTTATTTCAATGAACTCATTCAATAAAGATGAATATTGATCTGTGCATGAACTCATTTAGTTTGCTTCCACATTTCTGCTCTGATCTTCAGCATGCAGGCAACTCTAGAGCGGTACAGAAAGCATGCAAAAACCAAAGAAGCCCTCGACCCTCCATCGGTTAATGATATCCAGGTTTGTCCCCAACATTATTCCTAGTTTTAACCATTTGATGATCCACATTCAATGATCTTCTGCAGTTGGAGCATCTGAATCATGAAGAAGCAGCCACCCTGATGAAGAAAATAGAGCAGCTTGAAGTTTCAAAACGGTTCTAATGACTTAATTTCTTGTTTTTTTGGTTAAATCGTTGTTGTAATGCTGAAATCTGGGCTTGTCTTAAAACTGTTCATAAAAAAATTGTAGGAAAATGTTGGGAGAAGATCTGGGTTCTTGTTCCATTGATGAACTTCAGCAGGTTGAACTTCAGTTGGAGAAAAGTGTTTGCAAAATTAGAGCCAGAAAGGTTTTTGATTCAATCCCTTTTTTCTCTCTCTAAATTCAATTCTCTCTCTAACCCGGATTTTTATATTACAGGTTGAAGTGTTTGAAGAACAGATTAAACAACTAAAGCACAAGGTGAAACGATTCAAACATTCATCTGAAAAGTGTTTCTATTGGGTTTTTTTTTTTTTTTTTTTTTTTAAATGAATCTTTGGGCTGAAATGAAATGCAGGAGAAACTCTTGGAAGCCGAAAATGCTAAGCTACTCGAAAAGGTAAACGTCTGAATTTGGAGAGACTTGATAGAACAATGAACCTCTACAACGATATGATCATATTTACTTTGTTAGCCAATATTGTTCTTTTTGAGCTTACCCTTCCGAACTTCTCTTTAGGGTTTTTAAAACGCATCTACTAGGGAGAGATTTTCACATCTTATAACCAATGTTTCATTCCCTCTCCAACCAATCCACCCATTTTAGAGGCCTAGCGTCCTCGTTGGCACACCACCTATACCATTTGTAACTTCTCCTCTCCATCAATGTGGCTCGAGATTCCACATTAGTTGGAGACGGGAATGAAGCATTCCTTATAAAGGTGTAGAAACCTCTTTCTAATATATACCTATGATTGTGATACTCCAGCAAGATCTGCATAACCTCTATCAAAGATATATGATATAACGTTAGTTAAGCTATGTTGTTGTTCGTTCTTGACTCGATGAATGTCCGACTTTGGTTATAGCTGGGTATTAACAGCTAACATGGGTATGTTTTATTTTCATATATAGTGGGAAAGTGAGGCAGAAGGAGTAAAGGAAGTAGAAAGAGGGGAGAATTTAATGAACTATGCAGAAAGTAGCAGTCCAAGTTCAGAGGTAGAAACAGAGTTGTTCATTGGGCCACCTGAAACAAGGCCAAGAACATTTCTTTCCCTTAACTGATTCAATTTGTAGCCCTAATATTACTTTTATGTTTATAACAATAATAATACTCTTTTTCTGTTCAATTTCTACTCCATAAAGCATTACACACACAGAGGGAGAGATTTGGAAAATGTTTGTAAATAATTCTCATTTTTCATCTCTTTATAGCTCTTCACAGACATGCTGATATTGTTTCTTCTCCCAACGACCATTTAAAAATGTTTAATGAGTGACTCTCGTGTTGAGGTTAGAAATGATATATATTTCATTCAA

mRNA sequence

TTTGTAAGCTTAGCTAACAACTCCATTTCACTCTCTCTCTCTCTCTCTGACTTTTCTCCCCATTTCCATTTCCATTTCCATTTCCATTCGCTTCCCCGTTCGTGATTCTCCTCTTATCCTCCTCCTCTCCTCATTCCATTTTTTTCCCAAATCAAGAAACTTAGGATTGGATGAATCACCCTCCTTTCTCTCTCCTCCTCTCTCTCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTCCTCCTTTAGCTTTTGGGTACTCTAATTCCTTTCCAAATATTCCTCCTCTCCCTTTTTTAGCTTTCTCCAGCAAATTTGTAAAGTGGGTTTGAAACTACTCCACAAAAGGAAAGGTGGGTTTGCTTTGTTTTCCTCCTCTCTCCTTTGTGTTCTTCAAAATTTGTTTCTGATTCAACCAAAATAGCCCCTCTGCCCCCTTTTCTCCTTCTGGGTTTTCAGGTTTCTGGGGTTTTCTGTTGCTTTTAGATTGGTTCTGCCCTTTTGTGCTTCTATTTCAAGGTTTTCTTGTCTTCTTCTGTTTTTTTCTCTTAGTTTTTGTGTTTAGAGGGGGAGATTTCAGTGCTTCTGCTCCTTGTTTGATTACACTTTTGTTTCCTTCTGTGGCCTTCCCTTCTTTTCTTGATCTATAAATTCATCTTTTCCTTTGTGGGTTTCTTGAGATCCATCTGTGTGTAAGGGTTTATAGTGTTATTTAGGGGTAATTCCTCTATTTTTTAGTGTAAAGAGGTTTCAAATCGTGAGAAAATGGTGAGAGGGAAGACCCAGATGAGGTTAATTGAAAACGCAACAAGCAGGCAAGTCACCTTCTCCAAGAGGCGAAATGGGTTGATGAAAAAAGCCTTTGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCTAGAGGAAAGCTTTATGAATTTGCAAACTCAAGCATGCAGGCAACTCTAGAGCGGTACAGAAAGCATGCAAAAACCAAAGAAGCCCTCGACCCTCCATCGGTTAATGATATCCAGTTGGAGCATCTGAATCATGAAGAAGCAGCCACCCTGATGAAGAAAATAGAGCAGCTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGTTCTTGTTCCATTGATGAACTTCAGCAGGTTGAACTTCAGTTGGAGAAAAGTGTTTGCAAAATTAGAGCCAGAAAGGTTGAAGTGTTTGAAGAACAGATTAAACAACTAAAGCACAAGGAGAAACTCTTGGAAGCCGAAAATGCTAAGCTACTCGAAAAGTGGGAAAGTGAGGCAGAAGGAGTAAAGGAAGTAGAAAGAGGGGAGAATTTAATGAACTATGCAGAAAGTAGCAGTCCAAGTTCAGAGGTAGAAACAGAGTTGTTCATTGGGCCACCTGAAACAAGGCCAAGAACATTTCTTTCCCTTAACTGATTCAATTTGTAGCCCTAATATTACTTTTATGTTTATAACAATAATAATACTCTTTTTCTGTTCAATTTCTACTCCATAAAGCATTACACACACAGAGGGAGAGATTTGGAAAATGTTTGTAAATAATTCTCATTTTTCATCTCTTTATAGCTCTTCACAGACATGCTGATATTGTTTCTTCTCCCAACGACCATTTAAAAATGTTTAATGAGTGACTCTCGTGTTGAGGTTAGAAATGATATATATTTCATTCAA

Coding sequence (CDS)

ATGGTGAGAGGGAAGACCCAGATGAGGTTAATTGAAAACGCAACAAGCAGGCAAGTCACCTTCTCCAAGAGGCGAAATGGGTTGATGAAAAAAGCCTTTGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCTAGAGGAAAGCTTTATGAATTTGCAAACTCAAGCATGCAGGCAACTCTAGAGCGGTACAGAAAGCATGCAAAAACCAAAGAAGCCCTCGACCCTCCATCGGTTAATGATATCCAGTTGGAGCATCTGAATCATGAAGAAGCAGCCACCCTGATGAAGAAAATAGAGCAGCTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGTTCTTGTTCCATTGATGAACTTCAGCAGGTTGAACTTCAGTTGGAGAAAAGTGTTTGCAAAATTAGAGCCAGAAAGGTTGAAGTGTTTGAAGAACAGATTAAACAACTAAAGCACAAGGAGAAACTCTTGGAAGCCGAAAATGCTAAGCTACTCGAAAAGTGGGAAAGTGAGGCAGAAGGAGTAAAGGAAGTAGAAAGAGGGGAGAATTTAATGAACTATGCAGAAAGTAGCAGTCCAAGTTCAGAGGTAGAAACAGAGTTGTTCATTGGGCCACCTGAAACAAGGCCAAGAACATTTCTTTCCCTTAACTGA

Homology

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BLAST of CmoCh08G009120 vs. Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.2e-65
Identity = 141/212 (66.51%), Postives = 169/212 (79.72%), Query Frame = 1


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
           MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV+LIIFSP+GKLYEFA+S
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           +MQ T++RY +H K + +  P  V++  ++HL +E AA +MKKIEQLE SKRK+LGE +G
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKP--VSEENMQHLKYE-AANMMKKIEQLEASKRKLLGEGIG 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           +CSI+ELQQ+E QLEKSV  IRARK +VF+EQI+QLK KEK L AEN KL EKW S    
Sbjct: 121 TCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESE 180

Query: 181 VKEVERGENLMNYAESSSPSSEVETELFIGPP 213
           V   +  E+     E SSPSSEVET+LFIG P
Sbjct: 181 VWSNKNQESTGRGDEESSPSSEVETQLFIGLP 209

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BLAST of CmoCh08G009120 vs. Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.5e-51
Identity = 120/216 (55.56%), Postives = 161/216 (74.54%), Query Frame = 1


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
           MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVAL+IFSPR KLYEF++S
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           S+ AT+ERY++  + KE  +    ND   +    +E + L KKIEQLE+SKRK+LGE + 
Sbjct: 61  SIAATIERYQR--RIKEIGNNHKRNDNSQQ--ARDETSGLTKKIEQLEISKRKLLGEGID 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           +CSI+ELQQ+E QL++S+ +IRA+K ++  E+I++LK +E+ L  EN  L EKW     G
Sbjct: 121 ACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKW--LGMG 180

Query: 181 VKEVERGENLMNYAE-SSSPSSEVETELFIGPPETR 216
              +   ++ ++ +E +   + EVET LFIGPPETR
Sbjct: 181 TATIASSQSTLSSSEVNIDDNMEVETGLFIGPPETR 210

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BLAST of CmoCh08G009120 vs. Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2)

HSP 1 Score: 194.9 bits (494), Expect = 9.4e-49
Identity = 117/216 (54.17%), Postives = 153/216 (70.83%), Query Frame = 1


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEF-AN 60
           MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEF ++
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61  SSMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDL 120
           SS+  T+ERY+K  +   +    + N  Q    + +E   L +KIE LE+S RKM+GE L
Sbjct: 61  SSIPKTVERYQKRIQDLGSNHKRNDNSQQ----SKDETYGLARKIEHLEISTRKMMGEGL 120

Query: 121 GSCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAE 180
            + SI+ELQQ+E QL++S+ KIRA+K ++  E+ ++LK KE+ L AEN  L+EK E +  
Sbjct: 121 DASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQGR 180

Query: 181 GVKEVERGENLMNYAESSSPSSEVETELFIGPPETR 216
           G+       +  +  +      EV T+LFIGPPETR
Sbjct: 181 GIIGRISSSSSTSELDIDDNEMEVVTDLFIGPPETR 212

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BLAST of CmoCh08G009120 vs. Swiss-Prot
Match: AGL42_ARATH (MADS-box protein AGL42 OS=Arabidopsis thaliana GN=AGL42 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-46
Identity = 113/215 (52.56%), Postives = 153/215 (71.16%), Query Frame = 1


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
           MVRGK +M+ IENATSRQVTFSKRRNGL+KKA+ELSVLCDA+++LIIFS RG+LYEF++S
Sbjct: 1   MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
            MQ T+ERYRK+ K  E  +  S   I L+ L  +EA+ ++ KIE LE  KRK+LG+ + 
Sbjct: 61  DMQKTIERYRKYTKDHETSNHDS--QIHLQQLK-QEASHMITKIELLEFHKRKLLGQGIA 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           SCS++ELQ+++ QL++S+ K+R RK ++F+EQ+++LK KEK L  EN KL +K       
Sbjct: 121 SCSLEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQK------N 180

Query: 181 VKEVERGENLMNYAESSSP---SSEVETELFIGPP 213
           V    RG +     E       + EVET+LFIG P
Sbjct: 181 VINPWRGSSTDQQQEKYKVIDLNLEVETDLFIGLP 206

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BLAST of CmoCh08G009120 vs. Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.0e-46
Identity = 114/215 (53.02%), Postives = 151/215 (70.23%), Query Frame = 1


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
           MVRGKTQM+ IEN TSRQVTFSKRRNGL+KKAFELSVLCDAEVALI+FSPRGKLYEFA++
Sbjct: 1   MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASA 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           S Q T+ERYR +  TKE +   +V    +E +   +A  L KK+E LE  KRK+LGE L 
Sbjct: 61  STQKTIERYRTY--TKENIGNKTVQQ-DIEQVK-ADADGLAKKLEALETYKRKLLGEKLD 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESE--- 180
            CSI+EL  +E++LE+S+  IR RK ++ EEQ+ +L+ KE  L  +N +L EK +++   
Sbjct: 121 ECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREKCKNQPPL 180

Query: 181 AEGVKEVERGENLMNYAESSSPSSEVETELFIGPP 213
           +  +      EN      +++ + +VETELFIG P
Sbjct: 181 SAPLTVRAEDENPDRNINTTNDNMDVETELFIGLP 211

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BLAST of CmoCh08G009120 vs. TrEMBL
Match: O81662_PIMBR (Transcription activator OS=Pimpinella brachycarpa GN=MADS1 PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 8.5e-65
Identity = 147/215 (68.37%), Postives = 175/215 (81.40%), Query Frame = 1


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
           MVRGKTQMR IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKL+EFA+S
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLHEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           SM  T+ERYRKH K  ++ + P V ++Q  HL H E A+L KKIE LEVSKRK+LGE LG
Sbjct: 61  SMHETIERYRKHTKDVQSNNTPVVQNMQ--HLKH-ETASLAKKIELLEVSKRKLLGEGLG 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           +CSI+ELQQ+E QLEKSVC +RARK++VF+EQI+QLK KEK L A+NA LL K++ +   
Sbjct: 121 TCSINELQQIEQQLEKSVCTVRARKMQVFKEQIEQLKEKEKTLAADNAILLAKYDVQPR- 180

Query: 181 VKEVERGENLMNYAESSSPSSEVETELFIGPPETR 216
            +  E G NL +  E+S  +S+VETELFIGPPE R
Sbjct: 181 QESPEDGGNLTSTTENSE-NSDVETELFIGPPEKR 210

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BLAST of CmoCh08G009120 vs. TrEMBL
Match: T1QFT7_BRACI (MADS box transcription factor SOC1 variant 8 OS=Brassica carinata GN=SOC1 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 9.4e-64
Identity = 147/218 (67.43%), Postives = 170/218 (77.98%), Query Frame = 1


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
           MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV+LIIFSP+ KLYEFA+S
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKAKLYEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           +MQ T++RY +H K + +  P  V++  L+HL H EAA +MKKIEQLE SKRK+LGE +G
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKP--VSEENLQHLKH-EAANMMKKIEQLEASKRKLLGEGIG 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKW---ESE 180
           SCSI+ELQQ+E QLEKSV  IRARK +VF+EQI+QLK KEK L AEN KL EKW   E E
Sbjct: 121 SCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENKKLAEKWGSHEIE 180

Query: 181 AEGVKEVERGENLMNYAESSSPSSEVETELFIGPPETR 216
               K  E G       E SSPSSEVETELFIG P +R
Sbjct: 181 VRSNKNQESGRG----DEESSPSSEVETELFIGLPVSR 211

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BLAST of CmoCh08G009120 vs. TrEMBL
Match: T1QFU1_BRACI (MADS box transcription factor SOC1 variant 7 OS=Brassica carinata GN=SOC1 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.2e-63
Identity = 147/218 (67.43%), Postives = 171/218 (78.44%), Query Frame = 1


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
           MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV+LIIFSP+ KLYEFA+S
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKAKLYEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           +MQ T++RY +H  TK+ +    V++  L+HL H EAA +MKKIEQLE SKRK+LGE +G
Sbjct: 61  NMQDTIDRYLRH--TKDRVSSKPVSEENLQHLKH-EAANMMKKIEQLEASKRKLLGEGIG 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKW---ESE 180
           SCSI+ELQQ+ELQLEKSV  IRARK +VF+EQI+QLK KEK L AEN KL EKW   E E
Sbjct: 121 SCSIEELQQIELQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENKKLAEKWGSHEIE 180

Query: 181 AEGVKEVERGENLMNYAESSSPSSEVETELFIGPPETR 216
               K  E G       E SSPSSEVET+LFIG P +R
Sbjct: 181 VWSNKNQESGRG----DEESSPSSEVETQLFIGLPVSR 211

[Close]

BLAST of CmoCh08G009120 vs. TrEMBL
Match: V9M0H9_BRAJU (MADS box transcription factor SOC1 variant 5 OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.7e-63
Identity = 146/215 (67.91%), Postives = 170/215 (79.07%), Query Frame = 1


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
           MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV+LIIFSP+GKLYEFA+S
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           +MQ T++RY +H K + +  P  V++  L+HL H EAA +MKKIEQLE SKRK+LGE +G
Sbjct: 61  NMQDTVDRYLRHTKDRVSTKP--VSEENLQHLKH-EAANMMKKIEQLEASKRKLLGEGIG 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKW---ESE 180
           SCSI+ELQQ+E QLEKSV  IRARK +VF+EQI+QLK KEK L AEN KL EKW   E E
Sbjct: 121 SCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENKKLTEKWGSHEIE 180

Query: 181 AEGVKEVERGENLMNYAESSSPSSEVETELFIGPP 213
               K  E G+      E SSPSSEVET+LFIG P
Sbjct: 181 VWSNKNQESGKG----DEESSPSSEVETQLFIGLP 208

[Close]

BLAST of CmoCh08G009120 vs. TrEMBL
Match: A0A078JU96_BRANA (BnaC04g53290D protein OS=Brassica napus GN=BnaC04g53290D PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.7e-63
Identity = 146/215 (67.91%), Postives = 168/215 (78.14%), Query Frame = 1


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
           MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV+LIIFSP+ KLYEFA+S
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKAKLYEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           +MQ T++RY +H K + +  P  V++  L+HL H EAA +MKKIEQLE SKRK+LGE +G
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKP--VSEENLQHLKH-EAANMMKKIEQLEASKRKLLGEGIG 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKW---ESE 180
           SCSI+ELQQ+E QLEKSV  IRARK +VF+EQI+QLK KEK L AEN KL EKW   E E
Sbjct: 121 SCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENKKLAEKWGSHEIE 180

Query: 181 AEGVKEVERGENLMNYAESSSPSSEVETELFIGPP 213
               K  E G       E SSPSSEVETELFIG P
Sbjct: 181 VRSNKNQESGRG----DEESSPSSEVETELFIGLP 208

[Close]

BLAST of CmoCh08G009120 vs. TAIR10
Match: AT2G45660.1 (AT2G45660.1 AGAMOUS-like 20)

HSP 1 Score: 249.2 bits (635), Expect = 2.4e-66
Identity = 141/212 (66.51%), Postives = 169/212 (79.72%), Query Frame = 1


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
           MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV+LIIFSP+GKLYEFA+S
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           +MQ T++RY +H K + +  P  V++  ++HL +E AA +MKKIEQLE SKRK+LGE +G
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKP--VSEENMQHLKYE-AANMMKKIEQLEASKRKLLGEGIG 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           +CSI+ELQQ+E QLEKSV  IRARK +VF+EQI+QLK KEK L AEN KL EKW S    
Sbjct: 121 TCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESE 180

Query: 181 VKEVERGENLMNYAESSSPSSEVETELFIGPP 213
           V   +  E+     E SSPSSEVET+LFIG P
Sbjct: 181 VWSNKNQESTGRGDEESSPSSEVETQLFIGLP 209

[Close]

BLAST of CmoCh08G009120 vs. TAIR10
Match: AT4G22950.1 (AT4G22950.1 AGAMOUS-like 19)

HSP 1 Score: 204.1 bits (518), Expect = 8.7e-53
Identity = 120/216 (55.56%), Postives = 161/216 (74.54%), Query Frame = 1


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
           MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVAL+IFSPR KLYEF++S
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           S+ AT+ERY++  + KE  +    ND   +    +E + L KKIEQLE+SKRK+LGE + 
Sbjct: 61  SIAATIERYQR--RIKEIGNNHKRNDNSQQ--ARDETSGLTKKIEQLEISKRKLLGEGID 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           +CSI+ELQQ+E QL++S+ +IRA+K ++  E+I++LK +E+ L  EN  L EKW     G
Sbjct: 121 ACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKW--LGMG 180

Query: 181 VKEVERGENLMNYAE-SSSPSSEVETELFIGPPETR 216
              +   ++ ++ +E +   + EVET LFIGPPETR
Sbjct: 181 TATIASSQSTLSSSEVNIDDNMEVETGLFIGPPETR 210

[Close]

BLAST of CmoCh08G009120 vs. TAIR10
Match: AT4G11880.1 (AT4G11880.1 AGAMOUS-like 14)

HSP 1 Score: 194.9 bits (494), Expect = 5.3e-50
Identity = 117/216 (54.17%), Postives = 153/216 (70.83%), Query Frame = 1


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEF-AN 60
           MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEF ++
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61  SSMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDL 120
           SS+  T+ERY+K  +   +    + N  Q    + +E   L +KIE LE+S RKM+GE L
Sbjct: 61  SSIPKTVERYQKRIQDLGSNHKRNDNSQQ----SKDETYGLARKIEHLEISTRKMMGEGL 120

Query: 121 GSCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAE 180
            + SI+ELQQ+E QL++S+ KIRA+K ++  E+ ++LK KE+ L AEN  L+EK E +  
Sbjct: 121 DASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQGR 180

Query: 181 GVKEVERGENLMNYAESSSPSSEVETELFIGPPETR 216
           G+       +  +  +      EV T+LFIGPPETR
Sbjct: 181 GIIGRISSSSSTSELDIDDNEMEVVTDLFIGPPETR 212

[Close]

BLAST of CmoCh08G009120 vs. TAIR10
Match: AT5G62165.1 (AT5G62165.1 AGAMOUS-like 42)

HSP 1 Score: 188.0 bits (476), Expect = 6.5e-48
Identity = 113/215 (52.56%), Postives = 153/215 (71.16%), Query Frame = 1


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
           MVRGK +M+ IENATSRQVTFSKRRNGL+KKA+ELSVLCDA+++LIIFS RG+LYEF++S
Sbjct: 1   MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
            MQ T+ERYRK+ K  E  +  S   I L+ L  +EA+ ++ KIE LE  KRK+LG+ + 
Sbjct: 61  DMQKTIERYRKYTKDHETSNHDS--QIHLQQLK-QEASHMITKIELLEFHKRKLLGQGIA 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           SCS++ELQ+++ QL++S+ K+R RK ++F+EQ+++LK KEK L  EN KL +K       
Sbjct: 121 SCSLEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQK------N 180

Query: 181 VKEVERGENLMNYAESSSP---SSEVETELFIGPP 213
           V    RG +     E       + EVET+LFIG P
Sbjct: 181 VINPWRGSSTDQQQEKYKVIDLNLEVETDLFIGLP 206

[Close]

BLAST of CmoCh08G009120 vs. TAIR10
Match: AT5G51870.3 (AT5G51870.3 AGAMOUS-like 71)

HSP 1 Score: 161.0 bits (406), Expect = 8.5e-40
Identity = 101/222 (45.50%), Postives = 146/222 (65.77%), Query Frame = 1


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
           MVRGK +++ IEN TSRQVTFSKRR+GL KKA ELSVLCDA+VA I+FS  G+L+E+++S
Sbjct: 1   MVRGKIEIKKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQSGRLHEYSSS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
            M+  ++RY K +      + P V +  L+ L   E   ++KKI+ LEV  RK+LG+ L 
Sbjct: 61  QMEKIIDRYGKFSNAFYVAERPQV-ERYLQELK-MEIDRMVKKIDLLEVHHRKLLGQGLD 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESE--- 180
           SCS+ ELQ+++ Q+EKS+  +R+RK E++ +Q+K+LK KE+ L  E  +LLE+   E   
Sbjct: 121 SCSVTELQEIDTQIEKSLRIVRSRKAELYADQLKKLKEKERELLNERKRLLEEQNRERLM 180

Query: 181 ----AEGVKEVERGENLMNYAESSSPSSEVETELFIGPPETR 216
                  ++  ++G         +  SSEVET+LFIG P TR
Sbjct: 181 RPVVPATLQICDKGNT--EGGHRTKHSSEVETDLFIGLPVTR 218

[Close]

BLAST of CmoCh08G009120 vs. NCBI nr
Match: gi|449471671|ref|XP_004153376.1| (PREDICTED: MADS-box protein SOC1-like [Cucumis sativus])

HSP 1 Score: 339.7 bits (870), Expect = 3.8e-90
Identity = 187/225 (83.11%), Postives = 204/225 (90.67%), Query Frame = 1


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
           MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFA++
Sbjct: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFAST 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDI-QLEHLNHEEAATLMKKIEQLEVSKRKMLGEDL 120
           SMQAT+ERYRK AK KEALDPP VN+I QLEHLNHEEAA+L+KKIEQLEVSKRKMLGEDL
Sbjct: 61  SMQATIERYRKRAKAKEALDPPFVNNIVQLEHLNHEEAASLIKKIEQLEVSKRKMLGEDL 120

Query: 121 GSCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESE-A 180
           GSCS+DELQQ+E QLEKSVCKIRARK+EVFEEQIKQLK KEK+L+ ENAKLL+KWESE  
Sbjct: 121 GSCSLDELQQLEHQLEKSVCKIRARKIEVFEEQIKQLKQKEKVLQDENAKLLQKWESEGG 180

Query: 181 EGVKEVERGENLMNYAESSSPSSEVETELFIGPPETRPRTFLSLN 224
           +G    E GE ++NYAESSSPSSEVETEL IGP    PR FLS++
Sbjct: 181 DGGVNNEGGEKMLNYAESSSPSSEVETELLIGP----PRRFLSIH 221

[Close]

BLAST of CmoCh08G009120 vs. NCBI nr
Match: gi|659120339|ref|XP_008460142.1| (PREDICTED: MADS-box protein SOC1-like [Cucumis melo])

HSP 1 Score: 336.3 bits (861), Expect = 4.2e-89
Identity = 186/225 (82.67%), Postives = 203/225 (90.22%), Query Frame = 1


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
           MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFA+S
Sbjct: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDI-QLEHLNHEEAATLMKKIEQLEVSKRKMLGEDL 120
           SMQAT+ERYRK AKTKEALDPP VN+I QLEH NHEEAA+L+KKIEQLEVSKRKMLGEDL
Sbjct: 61  SMQATIERYRKRAKTKEALDPPFVNNIVQLEHFNHEEAASLIKKIEQLEVSKRKMLGEDL 120

Query: 121 GSCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESE-A 180
           GSCS+DELQQ+E QLEKSV KIRARK+EVFEEQIKQL+ KEK+L+ ENAKLL+KWESE  
Sbjct: 121 GSCSLDELQQLEHQLEKSVSKIRARKIEVFEEQIKQLRQKEKVLQDENAKLLQKWESEGG 180

Query: 181 EGVKEVERGENLMNYAESSSPSSEVETELFIGPPETRPRTFLSLN 224
           +G    E GE ++NYAESSSPSSEVETEL IGP    PR FLS++
Sbjct: 181 DGGVNNEGGEKMLNYAESSSPSSEVETELLIGP----PRRFLSIH 221

[Close]

BLAST of CmoCh08G009120 vs. NCBI nr
Match: gi|1000982184|ref|XP_002511767.2| (PREDICTED: MADS-box protein SOC1 isoform X1 [Ricinus communis])

HSP 1 Score: 255.8 bits (652), Expect = 7.2e-65
Identity = 148/220 (67.27%), Postives = 171/220 (77.73%), Query Frame = 1


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
           MVRGKTQMR IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALI+FSPRGKLYEFA+S
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           SMQ T+ERYR+H K  +    P+  D  ++H    EA  LMKKIE LEVSKRK+LG+ LG
Sbjct: 61  SMQDTIERYRRHVKEHQTNKKPT--DENMQHQLKSEAGNLMKKIELLEVSKRKLLGQGLG 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEA-E 180
           SC+++ELQQ+E QLEKSV  IRARK +VF+EQI+QLK KEK L AENA+L EK   +A  
Sbjct: 121 SCNLEELQQIEQQLEKSVSSIRARKNQVFKEQIEQLKEKEKQLAAENARLSEKCGVQALP 180

Query: 181 GVKEVERGENLMNYAESSSPSSEVETELFIGPPETRPRTF 220
           G+KE E         E  SP S+VETELFIGPPETR + F
Sbjct: 181 GLKEQEENRPY----EEGSPVSDVETELFIGPPETRTKRF 214

[Close]

BLAST of CmoCh08G009120 vs. NCBI nr
Match: gi|3493647|gb|AAC33475.1| (transcription activator [Spuriopimpinella brachycarpa])

HSP 1 Score: 255.0 bits (650), Expect = 1.2e-64
Identity = 147/215 (68.37%), Postives = 175/215 (81.40%), Query Frame = 1


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
           MVRGKTQMR IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKL+EFA+S
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLHEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           SM  T+ERYRKH K  ++ + P V ++Q  HL H E A+L KKIE LEVSKRK+LGE LG
Sbjct: 61  SMHETIERYRKHTKDVQSNNTPVVQNMQ--HLKH-ETASLAKKIELLEVSKRKLLGEGLG 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEG 180
           +CSI+ELQQ+E QLEKSVC +RARK++VF+EQI+QLK KEK L A+NA LL K++ +   
Sbjct: 121 TCSINELQQIEQQLEKSVCTVRARKMQVFKEQIEQLKEKEKTLAADNAILLAKYDVQPR- 180

Query: 181 VKEVERGENLMNYAESSSPSSEVETELFIGPPETR 216
            +  E G NL +  E+S  +S+VETELFIGPPE R
Sbjct: 181 QESPEDGGNLTSTTENSE-NSDVETELFIGPPEKR 210

[Close]

BLAST of CmoCh08G009120 vs. NCBI nr
Match: gi|433688853|gb|AGB51146.1| (MADS box transcription factor SOC1 variant 8 [Brassica carinata])

HSP 1 Score: 251.5 bits (641), Expect = 1.4e-63
Identity = 147/218 (67.43%), Postives = 170/218 (77.98%), Query Frame = 1


Query: 1   MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
           MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV+LIIFSP+ KLYEFA+S
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKAKLYEFASS 60

Query: 61  SMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLG 120
           +MQ T++RY +H K + +  P  V++  L+HL H EAA +MKKIEQLE SKRK+LGE +G
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKP--VSEENLQHLKH-EAANMMKKIEQLEASKRKLLGEGIG 120

Query: 121 SCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKW---ESE 180
           SCSI+ELQQ+E QLEKSV  IRARK +VF+EQI+QLK KEK L AEN KL EKW   E E
Sbjct: 121 SCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENKKLAEKWGSHEIE 180

Query: 181 AEGVKEVERGENLMNYAESSSPSSEVETELFIGPPETR 216
               K  E G       E SSPSSEVETELFIG P +R
Sbjct: 181 VRSNKNQESGRG----DEESSPSSEVETELFIGLPVSR 211

The following BLAST results are available for this feature:

BLAST of CmoCh08G009120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SOC1_ARATH	4.2e-65	66.51	MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1	[more]
AGL19_ARATH	1.5e-51	55.56	Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1	[more]
AGL14_ARATH	9.4e-49	54.17	Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2	[more]
AGL42_ARATH	1.1e-46	52.56	MADS-box protein AGL42 OS=Arabidopsis thaliana GN=AGL42 PE=2 SV=1	[more]
MAD50_ORYSJ	2.0e-46	53.02	MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 ...	[more]

BLAST of CmoCh08G009120 vs. TrEMBL


Match Name	E-value	Identity	Description
O81662_PIMBR	8.5e-65	68.37	Transcription activator OS=Pimpinella brachycarpa GN=MADS1 PE=2 SV=1	[more]
T1QFT7_BRACI	9.4e-64	67.43	MADS box transcription factor SOC1 variant 8 OS=Brassica carinata GN=SOC1 PE=4 S...	[more]
T1QFU1_BRACI	1.2e-63	67.43	MADS box transcription factor SOC1 variant 7 OS=Brassica carinata GN=SOC1 PE=4 S...	[more]
V9M0H9_BRAJU	2.7e-63	67.91	MADS box transcription factor SOC1 variant 5 OS=Brassica juncea PE=2 SV=1	[more]
A0A078JU96_BRANA	2.7e-63	67.91	BnaC04g53290D protein OS=Brassica napus GN=BnaC04g53290D PE=4 SV=1	[more]

BLAST of CmoCh08G009120 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45660.1	2.4e-66	66.51	AGAMOUS-like 20	[more]
AT4G22950.1	8.7e-53	55.56	AGAMOUS-like 19	[more]
AT4G11880.1	5.3e-50	54.17	AGAMOUS-like 14	[more]
AT5G62165.1	6.5e-48	52.56	AGAMOUS-like 42	[more]
AT5G51870.3	8.5e-40	45.50	AGAMOUS-like 71	[more]

BLAST of CmoCh08G009120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449471671\|ref\|XP_004153376.1\|	3.8e-90	83.11	PREDICTED: MADS-box protein SOC1-like [Cucumis sativus]	[more]
gi\|659120339\|ref\|XP_008460142.1\|	4.2e-89	82.67	PREDICTED: MADS-box protein SOC1-like [Cucumis melo]	[more]
gi\|1000982184\|ref\|XP_002511767.2\|	7.2e-65	67.27	PREDICTED: MADS-box protein SOC1 isoform X1 [Ricinus communis]	[more]
gi\|3493647\|gb\|AAC33475.1\|	1.2e-64	68.37	transcription activator [Spuriopimpinella brachycarpa]	[more]
gi\|433688853\|gb\|AGB51146.1\|	1.4e-63	67.43	MADS box transcription factor SOC1 variant 8 [Brassica carinata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox
IPR002487	TF_Kbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046983	protein dimerization activity
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010077	maintenance of inflorescence meristem identity
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009911	positive regulation of flower development
biological_process	GO:0000060	protein import into nucleus, translocation
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0008134	transcription factor binding
molecular_function	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G009120.1	CmoCh08G009120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 2.8E-29coord: 38..59 score: 2.8E-29coord: 3..23 score: 2.8
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..57 score: 5.7
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 score: 6.0
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57 scor
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 1..61 score: 3
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 3..89 score: 4.19
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 93..174 score: 2.8
IPR002487	Transcription factor, K-box	PROFILE	PS51297	K_BOX	coord: 90..180 score: 14
None	No IPR available	unknown	Coil	Coil	coord: 146..173 scor
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..215 score: 4.8
None	No IPR available	PANTHER	PTHR11945:SF208	MADS-BOX PROTEIN SOC1	coord: 2..215 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G009120	Cucsa.257910	Cucumber (Gy14) v1	cgycmoB0722
CmoCh08G009120	Cucsa.362960	Cucumber (Gy14) v1	cgycmoB1013
CmoCh08G009120	CmaCh08G009430	Cucurbita maxima (Rimu)	cmacmoB912
CmoCh08G009120	Cla006944	Watermelon (97103) v1	cmowmB862
CmoCh08G009120	Csa3G124870	Cucumber (Chinese Long) v2	cmocuB875
CmoCh08G009120	Csa6G076720	Cucumber (Chinese Long) v2	cmocuB880
CmoCh08G009120	MELO3C022515	Melon (DHL92) v3.5.1	cmomeB806
CmoCh08G009120	ClCG06G000230	Watermelon (Charleston Gray)	cmowcgB796
CmoCh08G009120	CSPI06G05710	Wild cucumber (PI 183967)	cmocpiB893
CmoCh08G009120	CSPI03G09280	Wild cucumber (PI 183967)	cmocpiB886
CmoCh08G009120	Lsi09G019140	Bottle gourd (USVL1VR-Ls)	cmolsiB804
CmoCh08G009120	Cp4.1LG17g02550	Cucurbita pepo (Zucchini)	cmocpeB853
CmoCh08G009120	MELO3C022515.2	Melon (DHL92) v3.6.1	cmomedB909
CmoCh08G009120	CsaV3_6G006020	Cucumber (Chinese Long) v3	cmocucB1047
CmoCh08G009120	CsaV3_3G009400	Cucumber (Chinese Long) v3	cmocucB1036
CmoCh08G009120	Cla97C06G109510	Watermelon (97103) v2	cmowmbB892
CmoCh08G009120	Bhi01G001014	Wax gourd	cmowgoB1107
CmoCh08G009120	CsGy6G005660	Cucumber (Gy14) v2	cgybcmoB846
CmoCh08G009120	CsGy3G016560	Cucumber (Gy14) v2	cgybcmoB432
CmoCh08G009120	Carg11097	Silver-seed gourd	carcmoB1452

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G009120	Watermelon (97103) v2	cmowmbB888
CmoCh08G009120	Cucurbita moschata (Rifu)	cmocmoB235
CmoCh08G009120	Cucurbita moschata (Rifu)	cmocmoB297
CmoCh08G009120	Cucurbita moschata (Rifu)	cmocmoB314
CmoCh08G009120	Cucurbita moschata (Rifu)	cmocmoB486
CmoCh08G009120	Cucurbita maxima (Rimu)	cmacmoB281
CmoCh08G009120	Cucurbita maxima (Rimu)	cmacmoB365
CmoCh08G009120	Cucurbita maxima (Rimu)	cmacmoB839
CmoCh08G009120	Wild cucumber (PI 183967)	cmocpiB891
CmoCh08G009120	Melon (DHL92) v3.5.1	cmomeB833
CmoCh08G009120	Melon (DHL92) v3.5.1	cmomeB835
CmoCh08G009120	Watermelon (Charleston Gray)	cmowcgB793
CmoCh08G009120	Watermelon (97103) v1	cmowmB857
CmoCh08G009120	Watermelon (97103) v1	cmowmB859
CmoCh08G009120	Cucurbita pepo (Zucchini)	cmocpeB833
CmoCh08G009120	Cucumber (Gy14) v2	cgybcmoB426
CmoCh08G009120	Melon (DHL92) v3.6.1	cmomedB941
CmoCh08G009120	Melon (DHL92) v3.6.1	cmomedB944
CmoCh08G009120	Silver-seed gourd	carcmoB0326
CmoCh08G009120	Silver-seed gourd	carcmoB0853
CmoCh08G009120	Cucumber (Chinese Long) v3	cmocucB1041