CmaCh08G009440 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G009440
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	MADS-box transcription factor
Location	Cma_Chr08 : 5883424 .. 5884392 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCAAATATTCCTCCTCTCCCTCTTTTTTTAGCTTTCTCCACCAAATTTGTAAAGTGGGTTTGAAACTACTCCTCAAAAGGAAAGGTGGGTTTGCTTTGTTTTCCTCTTCTCTTCTTTGTGTTCTTCAAATTTTATTTCTGATTCAACCAAAATAGCCCCTCTGCCCCTTTTCTCCTTCTGGGTTTTCAGGTTTCTGGGGTTTTCTTTTGGTTTTAGATTGGTTCTGCCCTTTTGTGCTTCTATTTCAAGGTTTTCTTGTCTTCTTCTGTTTTTTCTCTTAGTTTTTGGGTTTAGGAGGGGAGATTTCAGTGCTTCTGCTCCTTGTTTGATTACACTTTTGTTTCCTTCTGTGGCCTTCCCCTTCTTTTCTTGATCTATAAATTCATCTTTTCCTTTGGGTTTCTTGAGATCCATCTCTGTGTAAGGGTTTATAGTGTTATTCAGGGGTAATTCCTCTATTCTTTGGTGTAAAGGGGTTTCAAATCCTGAGAAAATGGTGAGAGGGAAGACCCAGATGAGGTTAATTGAAAACGCAACAAGCAGGCAAGTCACCTTCTCCAAGAGGCGAAATGGGTTGATGAAAAAAGCCTTTGAGCTCTCAGTTCTGTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCTAGAGGAAAGCTTTATGAATTTGCAAACTCAAGGTACTCTTAACATCTGCTTTTGCTCCAATCCATTCAGATTGTATGGCTTTAATCTTGATCTGCCTATGAATCTTTCCATTTATGAGTGATTTCTTATAGGTCTCAAGTAGCCTGGTTTTTTGCTGTTGTTTTCAATGAAACTATTGGGAGAAGTGAAAAGGGTTTGTACTAAATAACCATAGTTTAAACGCTCATACTGTTGATTACTGTTTGGTTTATATTAATTTATCAGTTGATTCCTTATTTAGATTATGATCGCACCCAAAAGCCTGCAATGGCTGCTCCTTTTTAG

mRNA sequence

TTCCAAATATTCCTCCTCTCCCTCTTTTTTTAGCTTTCTCCACCAAATTTGTAAAGTGGGTTTGAAACTACTCCTCAAAAGGAAAGGGGTTTCAAATCCTGAGAAAATGGTGAGAGGGAAGACCCAGATGAGGTTAATTGAAAACGCAACAAGCAGGCAAGTCACCTTCTCCAAGAGGCGAAATGGGTTGATGAAAAAAGCCTTTGAGCTCTCAGTTCTGTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCTAGAGGAAAGCTTTATGAATTTGCAAACTCAAGGTCTCAAGTAGCCTGGTTTTTTGCTGTTGTTTTCAATGAAACTATTGGGAGAAGTGAAAAGGATTATGATCGCACCCAAAAGCCTGCAATGGCTGCTCCTTTTTAG

Coding sequence (CDS)

ATGGTGAGAGGGAAGACCCAGATGAGGTTAATTGAAAACGCAACAAGCAGGCAAGTCACCTTCTCCAAGAGGCGAAATGGGTTGATGAAAAAAGCCTTTGAGCTCTCAGTTCTGTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCTAGAGGAAAGCTTTATGAATTTGCAAACTCAAGGTCTCAAGTAGCCTGGTTTTTTGCTGTTGTTTTCAATGAAACTATTGGGAGAAGTGAAAAGGATTATGATCGCACCCAAAAGCCTGCAATGGCTGCTCCTTTTTAG

Protein sequence

MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANSRSQVAWFFAVVFNETIGRSEKDYDRTQKPAMAAPF

Homology

[Close]

BLAST of CmaCh08G009440 vs. Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.6e-24
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV+LIIFSP+GKLYEFA+S
Sbjct: 1  MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 NMQ 63

[Close]

BLAST of CmaCh08G009440 vs. Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 9.9e-24
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEF++S
Sbjct: 1  MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61 RS 63
           S
Sbjct: 61 SS 62

[Close]

BLAST of CmaCh08G009440 vs. Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-23
Identity = 54/63 (85.71%), Postives = 60/63 (95.24%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQM+ IEN TSRQVTFSKRRNGL+KKAFELSVLCDAEVALI+FSPRGKLYEFA++
Sbjct: 1  MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASA 60

Query: 61 RSQ 64
           +Q
Sbjct: 61 STQ 63

[Close]

BLAST of CmaCh08G009440 vs. Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-22
Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVAL+IFSPR KLYEF++S
Sbjct: 1  MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

[Close]

BLAST of CmaCh08G009440 vs. Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.1e-22
Identity = 50/62 (80.65%), Postives = 59/62 (95.16%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRG+T+++ IEN TSRQVTFSKRRNGL+KKAFELSVLCDAEVALI+FSPRG+LYEFA++
Sbjct: 1  MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASA 60

Query: 61 RS 63
           S
Sbjct: 61 PS 62

[Close]

BLAST of CmaCh08G009440 vs. TrEMBL
Match: F5HPS4_9CARY (Suppressor of overexpression of constans 1 OS=Gypsophila paniculata GN=GpSOC1 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.0e-23
Identity = 65/90 (72.22%), Postives = 72/90 (80.00%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEFA+S
Sbjct: 1  MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61 RSQVAWFFAVVFNETIGRSEKDYDRTQKPA 91
            Q          ETIGR ++ + R  +PA
Sbjct: 61 SMQ----------ETIGRYQR-HVRDAQPA 79

[Close]

BLAST of CmaCh08G009440 vs. TrEMBL
Match: R4WG15_CHRMO (Suppressor of overexpression of CO1 like protein OS=Chrysanthemum morifolium GN=OpSOC1-1-1 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.6e-23
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQMR IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEFANS
Sbjct: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 SMQ 63

[Close]

BLAST of CmaCh08G009440 vs. TrEMBL
Match: S5SP82_LITCN (SOC1-1 OS=Litchi chinensis PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.6e-23
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQMR IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEFANS
Sbjct: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 SMQ 63

[Close]

BLAST of CmaCh08G009440 vs. TrEMBL
Match: A0A0U2VU98_CAMSI (SOC2 OS=Camellia sinensis GN=SOC2 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.6e-23
Identity = 62/92 (67.39%), Postives = 69/92 (75.00%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQMR IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEFA+S
Sbjct: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61 RSQVAWFFAVVFNETIGRSEKDYDRTQKPAMA 93
          R      F +     +   ++   R Q+   A
Sbjct: 61 RDNGVTSFVLCSISKLLSMQETIQRYQRHTKA 92

[Close]

BLAST of CmaCh08G009440 vs. TrEMBL
Match: G5EN34_9ASTR (Suppressor of overexpression of CO1 like protein OS=Chrysanthemum seticuspe f. boreale GN=CsSOC1 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.6e-23
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQMR IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEFANS
Sbjct: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 SMQ 63

[Close]

BLAST of CmaCh08G009440 vs. TAIR10
Match: AT2G45660.1 (AT2G45660.1 AGAMOUS-like 20)

HSP 1 Score: 110.9 bits (276), Expect = 4.3e-25
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV+LIIFSP+GKLYEFA+S
Sbjct: 1  MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 NMQ 63

[Close]

BLAST of CmaCh08G009440 vs. TAIR10
Match: AT4G11880.1 (AT4G11880.1 AGAMOUS-like 14)

HSP 1 Score: 110.5 bits (275), Expect = 5.6e-25
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEF++S
Sbjct: 1  MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61 RS 63
           S
Sbjct: 61 SS 62

[Close]

BLAST of CmaCh08G009440 vs. TAIR10
Match: AT4G22950.1 (AT4G22950.1 AGAMOUS-like 19)

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-23
Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVAL+IFSPR KLYEF++S
Sbjct: 1  MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

[Close]

BLAST of CmaCh08G009440 vs. TAIR10
Match: AT5G62165.1 (AT5G62165.1 AGAMOUS-like 42)

HSP 1 Score: 99.0 bits (245), Expect = 1.7e-21
Identity = 48/63 (76.19%), Postives = 58/63 (92.06%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGK +M+ IENATSRQVTFSKRRNGL+KKA+ELSVLCDA+++LIIFS RG+LYEF++S
Sbjct: 1  MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 DMQ 63

[Close]

BLAST of CmaCh08G009440 vs. TAIR10
Match: AT4G09960.3 (AT4G09960.3 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 93.2 bits (230), Expect = 9.2e-20
Identity = 44/60 (73.33%), Postives = 55/60 (91.67%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          M RGK +++ IEN+T+RQVTF KRRNGL+KKA+ELSVLCDAEVALI+FS RG+LYE+AN+
Sbjct: 27 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 86

[Close]

BLAST of CmaCh08G009440 vs. NCBI nr
Match: gi|659120339|ref|XP_008460142.1| (PREDICTED: MADS-box protein SOC1-like [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-23
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFA+S
Sbjct: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 SMQ 63

[Close]

BLAST of CmaCh08G009440 vs. NCBI nr
Match: gi|449471671|ref|XP_004153376.1| (PREDICTED: MADS-box protein SOC1-like [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 2.9e-23
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFA++
Sbjct: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFAST 60

Query: 61 RSQ 64
            Q
Sbjct: 61 SMQ 63

[Close]

BLAST of CmaCh08G009440 vs. NCBI nr
Match: gi|333777911|dbj|BAK24000.1| (suppressor of overexpression of constans 1 [Gypsophila paniculata])

HSP 1 Score: 116.3 bits (290), Expect = 2.9e-23
Identity = 65/90 (72.22%), Postives = 72/90 (80.00%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEFA+S
Sbjct: 1  MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61 RSQVAWFFAVVFNETIGRSEKDYDRTQKPA 91
            Q          ETIGR ++ + R  +PA
Sbjct: 61 SMQ----------ETIGRYQR-HVRDAQPA 79

[Close]

BLAST of CmaCh08G009440 vs. NCBI nr
Match: gi|961553544|gb|ALS54682.1| (SOC2 [Camellia sinensis])

HSP 1 Score: 115.9 bits (289), Expect = 3.8e-23
Identity = 62/92 (67.39%), Postives = 69/92 (75.00%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQMR IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEFA+S
Sbjct: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61 RSQVAWFFAVVFNETIGRSEKDYDRTQKPAMA 93
          R      F +     +   ++   R Q+   A
Sbjct: 61 RDNGVTSFVLCSISKLLSMQETIQRYQRHTKA 92

[Close]

BLAST of CmaCh08G009440 vs. NCBI nr
Match: gi|528225689|gb|AGS32267.1| (SOC1-1 [Litchi chinensis])

HSP 1 Score: 115.9 bits (289), Expect = 3.8e-23
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 1


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQMR IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEFANS
Sbjct: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 SMQ 63

The following BLAST results are available for this feature:

BLAST of CmaCh08G009440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SOC1_ARATH	7.6e-24	87.30	MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1	[more]
AGL14_ARATH	9.9e-24	88.71	Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2	[more]
MAD50_ORYSJ	1.3e-23	85.71	MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 ...	[more]
AGL19_ARATH	1.9e-22	86.67	Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1	[more]
MAD56_ORYSJ	7.1e-22	80.65	MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 ...	[more]

BLAST of CmaCh08G009440 vs. TrEMBL


Match Name	E-value	Identity	Description
F5HPS4_9CARY	2.0e-23	72.22	Suppressor of overexpression of constans 1 OS=Gypsophila paniculata GN=GpSOC1 PE...	[more]
R4WG15_CHRMO	2.6e-23	93.65	Suppressor of overexpression of CO1 like protein OS=Chrysanthemum morifolium GN=...	[more]
S5SP82_LITCN	2.6e-23	93.65	SOC1-1 OS=Litchi chinensis PE=2 SV=1	[more]
A0A0U2VU98_CAMSI	2.6e-23	67.39	SOC2 OS=Camellia sinensis GN=SOC2 PE=2 SV=1	[more]
G5EN34_9ASTR	2.6e-23	93.65	Suppressor of overexpression of CO1 like protein OS=Chrysanthemum seticuspe f. b...	[more]

BLAST of CmaCh08G009440 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45660.1	4.3e-25	87.30	AGAMOUS-like 20	[more]
AT4G11880.1	5.6e-25	88.71	AGAMOUS-like 14	[more]
AT4G22950.1	1.1e-23	86.67	AGAMOUS-like 19	[more]
AT5G62165.1	1.7e-21	76.19	AGAMOUS-like 42	[more]
AT4G09960.3	9.2e-20	73.33	K-box region and MADS-box transcription factor family protein	[more]

BLAST of CmaCh08G009440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120339\|ref\|XP_008460142.1\|	1.3e-23	95.24	PREDICTED: MADS-box protein SOC1-like [Cucumis melo]	[more]
gi\|449471671\|ref\|XP_004153376.1\|	2.9e-23	93.65	PREDICTED: MADS-box protein SOC1-like [Cucumis sativus]	[more]
gi\|333777911\|dbj\|BAK24000.1\|	2.9e-23	72.22	suppressor of overexpression of constans 1 [Gypsophila paniculata]	[more]
gi\|961553544\|gb\|ALS54682.1\|	3.8e-23	67.39	SOC2 [Camellia sinensis]	[more]
gi\|528225689\|gb\|AGS32267.1\|	3.8e-23	93.65	SOC1-1 [Litchi chinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G009440.1	CmaCh08G009440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 4.9E-30coord: 3..23 score: 4.9E-30coord: 38..59 score: 4.9
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..57 score: 9.8
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 score: 6.0
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57 scor
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 1..61 score:
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 3..61 score: 4.06
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..63 score: 2.9
None	No IPR available	PANTHER	PTHR11945:SF222	SUBFAMILY NOT NAMED	coord: 2..63 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh08G009440	MELO3C022515	Melon (DHL92) v3.5.1	cmameB822
CmaCh08G009440	CsGy6G005670	Cucumber (Gy14) v2	cgybcmaB864

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G009440	Cucumber (Gy14) v2	cgybcmaB459
CmaCh08G009440	Cucumber (Gy14) v2	cgybcmaB463
CmaCh08G009440	Melon (DHL92) v3.6.1	cmamedB920
CmaCh08G009440	Melon (DHL92) v3.6.1	cmamedB951
CmaCh08G009440	Melon (DHL92) v3.6.1	cmamedB954
CmaCh08G009440	Silver-seed gourd	carcmaB0321
CmaCh08G009440	Silver-seed gourd	carcmaB0879
CmaCh08G009440	Silver-seed gourd	carcmaB1495
CmaCh08G009440	Cucumber (Chinese Long) v3	cmacucB1053
CmaCh08G009440	Cucumber (Chinese Long) v3	cmacucB1060
CmaCh08G009440	Cucumber (Chinese Long) v3	cmacucB1065
CmaCh08G009440	Watermelon (97103) v2	cmawmbB915
CmaCh08G009440	Watermelon (97103) v2	cmawmbB918
CmaCh08G009440	Cucurbita maxima (Rimu)	cmacmaB299
CmaCh08G009440	Cucurbita maxima (Rimu)	cmacmaB373
CmaCh08G009440	Cucurbita maxima (Rimu)	cmacmaB359
CmaCh08G009440	Cucurbita maxima (Rimu)	cmacmaB556
CmaCh08G009440	Cucumber (Gy14) v1	cgycmaB0733
CmaCh08G009440	Cucumber (Gy14) v1	cgycmaB1013
CmaCh08G009440	Cucurbita moschata (Rifu)	cmacmoB885
CmaCh08G009440	Cucurbita moschata (Rifu)	cmacmoB886
CmaCh08G009440	Cucurbita moschata (Rifu)	cmacmoB887
CmaCh08G009440	Cucurbita moschata (Rifu)	cmacmoB911
CmaCh08G009440	Cucurbita moschata (Rifu)	cmacmoB912
CmaCh08G009440	Wild cucumber (PI 183967)	cmacpiB906
CmaCh08G009440	Wild cucumber (PI 183967)	cmacpiB915
CmaCh08G009440	Cucumber (Chinese Long) v2	cmacuB888
CmaCh08G009440	Cucumber (Chinese Long) v2	cmacuB895
CmaCh08G009440	Melon (DHL92) v3.5.1	cmameB851
CmaCh08G009440	Melon (DHL92) v3.5.1	cmameB853
CmaCh08G009440	Watermelon (Charleston Gray)	cmawcgB798
CmaCh08G009440	Watermelon (Charleston Gray)	cmawcgB801
CmaCh08G009440	Watermelon (97103) v1	cmawmB870
CmaCh08G009440	Watermelon (97103) v1	cmawmB872
CmaCh08G009440	Watermelon (97103) v1	cmawmB874
CmaCh08G009440	Cucurbita pepo (Zucchini)	cmacpeB895
CmaCh08G009440	Cucurbita pepo (Zucchini)	cmacpeB916
CmaCh08G009440	Bottle gourd (USVL1VR-Ls)	cmalsiB818
CmaCh08G009440	Bottle gourd (USVL1VR-Ls)	cmalsiB836