MELO3C022370 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022370
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	U2 small nuclear ribonucleoprotein a
Location	chr11 : 30209602 .. 30214884 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGGATCCACGCACCGGTCTTTTGGTGTCGTTCCTCGTCGATGCCTTCCCTTCCCTTCTCTTCCTCCTAAAGCCCTAAACCCCATCGTCGTCGTTCTGGTCGTCGTCGAAGAAGAAGAAGAAGAAGAAGATGGTGAGACTGACGGTCGATTTAATCTGGAAAAGTCCTCATTTCTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTTCTCTATCTTTTCTCAACTCTTCCTTCTTTCACTCTCTCCATCACACATTTCCTTCTTCACTCCTTTCTTCTTCTCTCCAGGTAACAAGATAGCGGTGATAGAAAACCTAGGTGCCACCGAGGTGAGTCATTCCCACTGCCTCCTTACTGTCTCTTTGTTTTAAATCTCTGGAACTCGAACATAGATTTAAATTATCTTTACATGCTGGCGAGAATCTTTCTACAGAATTCAACTTCACTTCAAATGAGTAATTATAGTTCCCATTTTCTCTATACCATTGTGAAGTTTGTTTGAAAGTTTCATTTTCCTTGAAGACAGCCTAGTAAATTCCAATTTGAGGCCATATGCTGTGCATTTTCCCTTGAGTCATTCAAGCTTTAAATTTTATCATATTGAGGATTCAATTGTCCCTTTCAACCACAAGGATGAGATTTGAGTACTAATTGTTTTCTTACCATAGAATTATGGCTATATGGAAAGTGATGACCTCCTTTGCCTTCTATCTTGAGTAATTACACTTCTGTAGGCCATAAATATACCCAGACCTGTTAAGGAACTTACTGGTGTAAACCAGTTAGTATTTTTCTCTTGACTCAAAATTGTGCCCTTTACAGATAGGACTAGTATTTATACTAGTCTTTCTCTTAACGAAAAATAGCGAGCTTAACTAACTATTCTAACAGCTAACAACCAACTTTCCCAACATCCATATCAACTGAAAATTTACCCAATCACATCACTCACGTTCCAAAATAAGCTCCACAGGAGCAGAACACAACTGGATTAATTAGAGTCGAGCAGTTATTGTTGTTTTGTATAAAAAACAATAATAGTAAAATTGGAGTCAACCTTGAAGTTAACTAACATATGAGAAAAGAGGCCGTCTGAATCAAGTTTCCAGAGCAGTCCATCCTTATAAGTGCCTAGCTTTATCAGATTGAGCTTAAGAGAGAAAAGGATGCACTCTTTAATTTTCGATTTCCTAGTCTCCTCCTCAAGCCTACATCCCAAAGACTCCTCTTTCTGTAGATTCTTATGGAGAGCTACTTCGGTTTTTTGGATCATTAGTATTTTGAAAGAAATAGGAGTGTCTATCAATGGACCTTGGGTTTTGACAACTCATGGCTAACAATCAACTCCGTGATCATGACCTTCTACATTTGGGAGCCATCAAATGGGATAAGAACATCATTTACTCCATAAAACTTCTACAACAGTGCCACTATATCTTTAAGGTTAAATTGCATACATCTAAACTATTCTCCTATTAAAATGGACTGATACACCAAGAAGGTTGCGCCAACAGACACTTGGTTACAACACCATAATATTTTTTACTTGAAGTGCTTTCTCATCTAAACTCATAAGTTTCCCCTTTATCTGTTTGTTCGGGGATAAAATGATTGGCAATTTATCTTGCTTTCACAAAAATGAAAGAAAATGGTGTCTGTTCTTTGTTTCCTTTTATTTTCTAGACATATAATGGTAGCTTTTCCGACCAAAAATTTCAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCCTATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGTATCAATCCAAATATTGGAGGTGAGCTTTCCATTATGCCTTCATAGGATTATATAGGCGCCGTATGGTAACCATTTTTGTTCTGTGTTCTTTTCGAAATATTATGCTTTTTTACTCTCAAAATTTTGTTTTGGTGAGTTTTCCACCTTTCTTGAGAACACATTTGAAGTCTAAATCAAAATTCAAAAACAAAATCAAGATTTTAAAAACTACTCATTTAACTTTTAAAAAATTTTCTTGGCTTTTTTAAAACGATATTTAAGTGCAGGTGATGGAATAAGGAAATTATATATAAAAGTAGTGTTTACAAGCTTAATTTTCAAAAATAAGAAACCAAAAAACTAAAATGGTTATTTAATGGGCTAGCAGTATTATTTTTGAAATTATGTTCTTAAAAAATCAATTGTCTTTGTTCATTTCAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCATCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACGAAGAAGCCAAATTATCGATTGTATGTCATTCACAAGTTGAAGTCGGTCCGCGTGCTTGATTTCAAGAAAGTCAGAAACAAGGTAACTTTTTCCTGCTTTCAGACCTTACTATTTAAGGAATGGCTATAATTCTGTGCTTGTTTCTGCATTTTACATCAACAATCCCGAAACATTTAGATGACAATCTCAGGTTTGTTTCAAAAATTTTAGAGCCGATGGTGTATTTTGAAAATGTTGTAACTTTTAGTATTTGCAAGTATGTAGACATTGAGTTTTCTTATTGTATTTAATATGATATTTGACTCTAAGTTGTGCTTTGATTGCGATAGTTCTTAAAAAAATTTTAAGTTCTTGCTATTTTTAAAAATACATATATTATGCAATCCATGTTCTATTGTTTATTAGAGACTAAAGAGTACATGTTTCCTGCACATGATAAATGTGCATATGCTCTTATGTTAATACCTGAAGAATTCAAATGAATTCAGTTTTAATGTCCAGCTATTTATTATTAACAATCATGTGCCTGAGAATTAGTTTTTTGGCTAGAAAAATAAGAAGTAAAAATACTGAAGGAGTGCCTATAAATAGAATTGAACTTTATTCTATTAGAGTAGAACATCCGTGGACATCTAGGATGTTCACGTGTAAGAGTCACTATTTTTGGACAAGTAGGGTTCCACTCTACTTCATTCAACTCCGATTCAATGTGTATGCTTGGTTTAGAGTCTAATTTTATTCTTGAATCTAATTGGTGAGTTTATACAAAAATTTCCTGTTGTGACGGACTTTGGTTACTAGATAACCAATGCCTACTGCATCTCTTCATTTCTAAATGTGAAATGACAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAAGCAAAGAAGGAATCTGTGAAGACATTCGTTTCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCGCCAACACCGGAGCAAATTATAGCTATAAAGGTGTGTACTTTATATAAAAAATTTAAGTTCACCTGCCTTTTTGTTTGGAGAAAGGTCAAGTTCTAAAACTCTTAGGGTAAAATGCACTTTCGGTCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGCTTACTCGTCATTTTTTCCTTGGTCAATTAACAGTGGTTTTTGTTAAAACTCAAAAGACAAAAATTGTATTTTTCCGAACCTCTTTTGTTGACTACCATTTCCTCATCCCTAAAAGTATAACAAGAAATTTATTTTTAGGGATTAAAAATTCCAATGGTAAATAGTAACATTCCTGATATGGGATCACCTAATATATTAGTGTATGCCAACTCGATTGATTTGTTCTTGGACATTTATGTGATCTTTTCAAATACACGGAATTAATTCCTTTAGTTTGATCTTTGTTCATTGGTTTATTTGCACTTGGCTTTTAAAGAAGTGTTTCACCATCACATGTTTCCTACAACATCTTCTGATCAATCCATTCTTTACGTTACAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGTATGCTTCGTTTTTTTTTTTTTTTGTCTTCTACAGACCCTCCCTCCTCAAAAGGAAAATGCAGGAGAAAAATCTCTATTTAAATGTTATGGGAATAATAACGTTGGAAAATTCTTTGTTGGCACAGGCGCTTAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGATAATACCGCACCAAACATCACAAAAGATAAAGATGATAAGACAACGTCTGGTAGCGGAGATGAAGAACATGTAACGAATGATGAATCTACACCTATGGAGCAGGTACCACAAACCTTTATGCCTTCGATCGGTTGTTTTCTCTCACGTTTTTTTTGAGCATATTTCTTTTTTATATGTATATCATGTATGTTATTCATTGTTCTGTTTGTGGTTGTAGGAATAATAGTAGAAAATTATTGCTGTGACTACTGTGGTGGCTCATCTATAAGTATTCATCAATGGCGATCCTGTCGTGCTGATTTGTGGACATTTTTTAAAAAACCATTTGAGAAGTCTAAGCATGGCACTTCCCAGCCAGGGGAATGTTAGGCGGATCTTTTGCCTCTCTTTGTAAGAGTTGGGCTCTCTTTTCTTTTCCCTTTATTTCATTTTTCCTTTTTTTTTTTTTCTTTGGGTAAAGAATATTCTAAAAATATGTACGGAGTTTTTGTTTTTGCTGTATTTACAACACTTTGATGGCTTTTGAAATTTCCTTACTTTAAAATATATGTACGATTATTTAGCTT

mRNA sequence

AATGGATCCACGCACCGGTCTTTTGGTGTCGTTCCTCGTCGATGCCTTCCCTTCCCTTCTCTTCCTCCTAAAGCCCTAAACCCCATCGTCGTCGTTCTGGTCGTCGTCGAAGAAGAAGAAGAAGAAGAAGATGGTGAGACTGACGGTCGATTTAATCTGGAAAAGTCCTCATTTCTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTAACAAGATAGCGGTGATAGAAAACCTAGGTGCCACCGAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCCTATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGTATCAATCCAAATATTGGAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCATCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACGAAGAAGCCAAATTATCGATTGTATGTCATTCACAAGTTGAAGTCGGTCCGCGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAAGCAAAGAAGGAATCTGTGAAGACATTCGTTTCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCGCCAACACCGGAGCAAATTATAGCTATAAAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGCGCTTAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGATAATACCGCACCAAACATCACAAAAGATAAAGATGATAAGACAACGTCTGGTAGCGGAGATGAAGAACATGTAACGAATGATGAATCTACACCTATGGAGCAGGAATAATAGTAGAAAATTATTGCTGTGACTACTGTGGTGGCTCATCTATAAGTATTCATCAATGGCGATCCTGTCGTGCTGATTTGTGGACATTTTTTAAAAAACCATTTGAGAAGTCTAAGCATGGCACTTCCCAGCCAGGGGAATGTTAGGCGGATCTTTTGCCTCTCTTTGTAAGAGTTGGGCTCTCTTTTCTTTTCCCTTTATTTCATTTTTCCTTTTTTTTTTTTTCTTTGGGTAAAGAATATTCTAAAAATATGTACGGAGTTTTTGTTTTTGCTGTATTTACAACACTTTGATGGCTTTTGAAATTTCCTTACTTTAAAATATATGTACGATTATTTAGCTT

Coding sequence (CDS)

ATGGTGAGACTGACGGTCGATTTAATCTGGAAAAGTCCTCATTTCTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTAACAAGATAGCGGTGATAGAAAACCTAGGTGCCACCGAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCCTATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGTATCAATCCAAATATTGGAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCATCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACGAAGAAGCCAAATTATCGATTGTATGTCATTCACAAGTTGAAGTCGGTCCGCGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAAGCAAAGAAGGAATCTGTGAAGACATTCGTTTCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCGCCAACACCGGAGCAAATTATAGCTATAAAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGCGCTTAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGATAATACCGCACCAAACATCACAAAAGATAAAGATGATAAGACAACGTCTGGTAGCGGAGATGAAGAACATGTAACGAATGATGAATCTACACCTATGGAGCAGGAATAA

Protein sequence

MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE*

Homology

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BLAST of MELO3C022370 vs. Swiss-Prot
Match: RU2A_ARATH (U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 SV=2)

HSP 1 Score: 370.2 bits (949), Expect = 2.1e-101
Identity = 191/239 (79.92%), Postives = 207/239 (86.61%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN 
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPN+GEFLP LH+LVLTNNRLVNLVEIDPLAS+ KLQ+LSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKK NYRLYVIHKLKS+RVLDF K++ KER EA +LFSSKE EEE KK S +   
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSRE--- 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 240
             EV+K S+  E  +TP V APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Sbjct: 181 --EVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGL 234

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BLAST of MELO3C022370 vs. Swiss-Prot
Match: RU2A_HUMAN (U2 small nuclear ribonucleoprotein A' OS=Homo sapiens GN=SNRPA1 PE=1 SV=2)

HSP 1 Score: 223.4 bits (568), Expect = 3.1e-57
Identity = 127/238 (53.36%), Postives = 159/238 (66.81%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FVSGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 237
           F  G    A  P ++K+      P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Sbjct: 181 FNPG----AGLPTDKKK----GGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIP 230

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BLAST of MELO3C022370 vs. Swiss-Prot
Match: RU2A_MACFA (U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis GN=SNRPA1 PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 3.1e-57
Identity = 127/238 (53.36%), Postives = 159/238 (66.81%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FVSGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 237
           F  G    A  P ++K+      P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Sbjct: 181 FNPG----AGLPTDKKK----GGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIP 230

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BLAST of MELO3C022370 vs. Swiss-Prot
Match: RU2A_MOUSE (U2 small nuclear ribonucleoprotein A' OS=Mus musculus GN=Snrpa1 PE=1 SV=2)

HSP 1 Score: 222.2 bits (565), Expect = 6.9e-57
Identity = 133/267 (49.81%), Postives = 170/267 (63.67%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FVSGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPAD 240
           F  G    A  P ++K+      P+   + AIK AI N+ TL EV RL+  L+SGQ+P  
Sbjct: 181 FNPG----AGLPTDKKK----GGPSAGDVEAIKNAIANASTLAEVERLKGLLQSGQIPG- 240

Query: 241 LNLLEDNTAPNITKD---KDDKTTSGS 263
               E  + P+   +   +DD  T+GS
Sbjct: 241 ---RERRSGPSDEGEEEIEDDTVTNGS 255

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BLAST of MELO3C022370 vs. Swiss-Prot
Match: RU2A_CAEEL (Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans GN=mog-2 PE=1 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.1e-49
Identity = 109/238 (45.80%), Postives = 151/238 (63.45%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT +L  + P F N++  RE++LRG KI VIEN+G T DQFD IDL+DN+I KL+N 
Sbjct: 1   MVRLTTELFAERPQFVNSVNMREINLRGQKIPVIENMGVTRDQFDVIDLTDNDIRKLDNF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           P  +RL TL ++NNRI  I P+I   LPNL TL LTNN +  L +I+PLA   KL++++ 
Sbjct: 61  PTFSRLNTLYLHNNRINYIAPDIATKLPNLKTLALTNNNICELGDIEPLAECKKLEYVTF 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEE--EAKKESVKT 180
           + N IT K NYR+Y+I+KL +VRV+DF +VR  ER  A+ +F  K  ++  +A ++SV T
Sbjct: 121 IGNPITHKDNYRMYMIYKLPTVRVIDFNRVRLTEREAAKKMFKGKSGKKARDAIQKSVHT 180

Query: 181 FVSGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 237
               E+E       E  +   +  T E    IK AI N+++L EV  L+  L SG++P
Sbjct: 181 EDPSEIEP-----NENSSGGGARLTDEDREKIKEAIKNAKSLSEVNYLQSILASGKVP 233

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BLAST of MELO3C022370 vs. TrEMBL
Match: E5GB46_CUCME (U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 542.7 bits (1397), Expect = 2.6e-151
Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE 280
           LLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE
Sbjct: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE 279

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BLAST of MELO3C022370 vs. TrEMBL
Match: M5XHK1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018334mg PE=4 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 1.3e-118
Identity = 226/285 (79.30%), Postives = 242/285 (84.91%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT DL+WKSPHFFNA+KERELDLRGNKIAVIENLGATEDQFD IDLSDNEIVKLEN+
Sbjct: 1   MVRLTADLVWKSPHFFNALKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENL 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTL+INNNRITRINPNIGEFLP LHTL+LTNNRLVNLVEIDPL SL KLQFLSL
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEFLPKLHTLILTNNRLVNLVEIDPLESLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKS+RVLDFKKV+NKERLEA+ LFSSKEVEEE KK S KTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVKNKERLEAQTLFSSKEVEEETKKVSAKTFV 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
             EV   S   EE+QTP V APTPEQI+AIKAAIVNSQTLEEVARLEQALKSGQLPADL 
Sbjct: 181 PTEVPNVSDVAEEQQTPKVVAPTPEQIMAIKAAIVNSQTLEEVARLEQALKSGQLPADLK 240

Query: 241 LLEDNTAPNITKDKDDKTTSGSGDE-------EHVTNDESTPMEQ 279
           +L+D+T  N  K  DDK    S +E       +    DE+ PMEQ
Sbjct: 241 ILDDDTETNSVKVNDDKMEVNSENEANAPKDVDEQKKDEAEPMEQ 285

[Close]

BLAST of MELO3C022370 vs. TrEMBL
Match: A0A059ADU7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01697 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 1.7e-118
Identity = 223/287 (77.70%), Postives = 247/287 (86.06%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRL+ DLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFD IDLSDNEIVKLEN 
Sbjct: 1   MVRLSADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTL+LTNNRLVNL EIDPLASL +LQ+L L
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLILTNNRLVNLAEIDPLASLPRLQYLGL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNN+TKKPNYRLYVIHKLKS+RVLDF+KV++KERLEA  LFSSKEVEEEAKKES KTF+
Sbjct: 121 LDNNVTKKPNYRLYVIHKLKSLRVLDFRKVKSKERLEAEQLFSSKEVEEEAKKESTKTFM 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GEV+K S+P EE+Q P V APTPEQIIAIKAAIVNSQTLEEVARLE+ALKSGQLPADL 
Sbjct: 181 PGEVQKVSEPTEEQQAPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 240

Query: 241 LLEDNTAPNITKDKDDKTTSGSGDE--------EHVTNDESTPMEQE 280
           + E  T     +++D++ TS + DE        E  T++E  PM+QE
Sbjct: 241 IPEVVTGAGSVEERDEEMTSTNQDEADVEQKNVEEQTDNEPAPMDQE 287

[Close]

BLAST of MELO3C022370 vs. TrEMBL
Match: D7TFN0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0150g00590 PE=4 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 2.4e-117
Identity = 221/287 (77.00%), Postives = 245/287 (85.37%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT DLIWKSPHFFNAI+ERELDLRGNK+AVIENLGATEDQFD IDLSDNEIVKLEN+
Sbjct: 1   MVRLTADLIWKSPHFFNAIRERELDLRGNKVAVIENLGATEDQFDTIDLSDNEIVKLENL 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGE+LP LHTLVLTNNRLVNL EIDPL+S  KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSFPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIH+LKS+R+LDFKKV+NKERLEA NLF+SKEVEEEAK+E +KTF 
Sbjct: 121 LDNNITKKPNYRLYVIHRLKSLRLLDFKKVKNKERLEAENLFASKEVEEEAKQEPLKTFT 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GE+  A +P EE+Q P V  P+PE++IAIKAAIVNSQTLEEVARLE+ALKSGQLPADL 
Sbjct: 181 PGEMPNALEPAEEQQIPKVVGPSPEELIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 240

Query: 241 LLEDNTAPNITKDKDDKTTSG----SGDE----EHVTNDESTPMEQE 280
            L +NT  ++  +KDDK  S     S DE    E   ND+  PMEQE
Sbjct: 241 SLVENTRADVVNEKDDKMVSSNPNTSRDEPKTVEEQKNDDVAPMEQE 287

[Close]

BLAST of MELO3C022370 vs. TrEMBL
Match: U7DXL9_POPTR (U2 small nuclear ribonucleoprotein A OS=Populus trichocarpa GN=POPTR_0381s00210g PE=4 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 5.4e-117
Identity = 224/285 (78.60%), Postives = 244/285 (85.61%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLENM
Sbjct: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTL+INNNRITRINPNIGE+LP LHTLVLTNNRLVNL EIDPL+SL KLQFLSL
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDN ITKKPNYRLYVIHKLKS+RVLDFKKV+ KER EA +LFSSKEVEEEAK+ESVKTF 
Sbjct: 121 LDNTITKKPNYRLYVIHKLKSLRVLDFKKVKAKERAEAEHLFSSKEVEEEAKRESVKTFT 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GE+    +  EE+Q P V APTPEQIIAIKAAIVNSQTLEEVARLE+AL SGQLPADL 
Sbjct: 181 PGEIPNIPEVAEEQQAPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALNSGQLPADLK 240

Query: 241 LLEDNTAPNITKDKDDKTTSGSGDE------EHVTNDESTPMEQE 280
           +L+D T  N  K++DDK  + S +E      E   ++E+TPMEQE
Sbjct: 241 ILDD-TGSNSVKEQDDKMATDSQNEAEPNNLEEQKDNEATPMEQE 284

[Close]

BLAST of MELO3C022370 vs. TAIR10
Match: AT1G09760.1 (AT1G09760.1 U2 small nuclear ribonucleoprotein A)

HSP 1 Score: 370.2 bits (949), Expect = 1.2e-102
Identity = 191/239 (79.92%), Postives = 207/239 (86.61%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN 
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPN+GEFLP LH+LVLTNNRLVNLVEIDPLAS+ KLQ+LSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKK NYRLYVIHKLKS+RVLDF K++ KER EA +LFSSKE EEE KK S +   
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSRE--- 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 240
             EV+K S+  E  +TP V APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Sbjct: 181 --EVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGL 234

[Close]

BLAST of MELO3C022370 vs. NCBI nr
Match: gi|659119954|ref|XP_008459932.1| (PREDICTED: U2 small nuclear ribonucleoprotein A' [Cucumis melo])

HSP 1 Score: 542.7 bits (1397), Expect = 3.7e-151
Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE 280
           LLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE
Sbjct: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE 279

[Close]

BLAST of MELO3C022370 vs. NCBI nr
Match: gi|778711690|ref|XP_004140564.2| (PREDICTED: U2 small nuclear ribonucleoprotein A', partial [Cucumis sativus])

HSP 1 Score: 530.8 bits (1366), Expect = 1.4e-147
Identity = 274/278 (98.56%), Postives = 274/278 (98.56%), Query Frame = 1


Query: 2   VRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMP 61
           VRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMP
Sbjct: 13  VRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMP 72

Query: 62  YLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSLL 121
           YLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSLL
Sbjct: 73  YLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSLL 132

Query: 122 DNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVS 181
           DNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 
Sbjct: 133 DNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVP 192

Query: 182 GEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNL 241
           GEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNL
Sbjct: 193 GEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNL 252

Query: 242 LEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE 280
           LEDNTA NITKDKDDKT S SGDEEHVTNDESTPMEQE
Sbjct: 253 LEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE 290

[Close]

BLAST of MELO3C022370 vs. NCBI nr
Match: gi|645231236|ref|XP_008222301.1| (PREDICTED: U2 small nuclear ribonucleoprotein A' [Prunus mume])

HSP 1 Score: 438.3 bits (1126), Expect = 9.8e-120
Identity = 229/286 (80.07%), Postives = 244/286 (85.31%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT DL+WKSPHFFNA+KERELDLRGNKIAVIENLGATEDQFD IDLSDNEIVKLEN+
Sbjct: 1   MVRLTADLVWKSPHFFNALKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENL 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTL+INNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLSL
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKS+RVLDFKKV+NKERLEA+ LFSSKEVEEE KK S KTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVKNKERLEAQTLFSSKEVEEETKKVSAKTFV 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
             EV   S   EE+QTP V APTPEQI+AIKAAIVNSQTLEEVARLEQALKSGQLPADL 
Sbjct: 181 PTEVPNVSDVAEEQQTPKVVAPTPEQIMAIKAAIVNSQTLEEVARLEQALKSGQLPADLK 240

Query: 241 LLEDNTAPNITKDKDDKTTSGSGDE-------EHVTNDESTPMEQE 280
           +L+D+T  N  K  DDK    S +E       +    DE+ PMEQE
Sbjct: 241 ILDDDTETNSVKVNDDKMDVNSENEANAPKDVDEQKKDEAEPMEQE 286

[Close]

BLAST of MELO3C022370 vs. NCBI nr
Match: gi|596228279|ref|XP_007224240.1| (hypothetical protein PRUPE_ppa018334mg, partial [Prunus persica])

HSP 1 Score: 434.1 bits (1115), Expect = 1.8e-118
Identity = 226/285 (79.30%), Postives = 242/285 (84.91%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT DL+WKSPHFFNA+KERELDLRGNKIAVIENLGATEDQFD IDLSDNEIVKLEN+
Sbjct: 1   MVRLTADLVWKSPHFFNALKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENL 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTL+INNNRITRINPNIGEFLP LHTL+LTNNRLVNLVEIDPL SL KLQFLSL
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEFLPKLHTLILTNNRLVNLVEIDPLESLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKS+RVLDFKKV+NKERLEA+ LFSSKEVEEE KK S KTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVKNKERLEAQTLFSSKEVEEETKKVSAKTFV 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
             EV   S   EE+QTP V APTPEQI+AIKAAIVNSQTLEEVARLEQALKSGQLPADL 
Sbjct: 181 PTEVPNVSDVAEEQQTPKVVAPTPEQIMAIKAAIVNSQTLEEVARLEQALKSGQLPADLK 240

Query: 241 LLEDNTAPNITKDKDDKTTSGSGDE-------EHVTNDESTPMEQ 279
           +L+D+T  N  K  DDK    S +E       +    DE+ PMEQ
Sbjct: 241 ILDDDTETNSVKVNDDKMEVNSENEANAPKDVDEQKKDEAEPMEQ 285

[Close]

BLAST of MELO3C022370 vs. NCBI nr
Match: gi|702479418|ref|XP_010032790.1| (PREDICTED: U2 small nuclear ribonucleoprotein A' [Eucalyptus grandis])

HSP 1 Score: 433.7 bits (1114), Expect = 2.4e-118
Identity = 223/287 (77.70%), Postives = 247/287 (86.06%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRL+ DLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFD IDLSDNEIVKLEN 
Sbjct: 1   MVRLSADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTL+LTNNRLVNL EIDPLASL +LQ+L L
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLILTNNRLVNLAEIDPLASLPRLQYLGL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNN+TKKPNYRLYVIHKLKS+RVLDF+KV++KERLEA  LFSSKEVEEEAKKES KTF+
Sbjct: 121 LDNNVTKKPNYRLYVIHKLKSLRVLDFRKVKSKERLEAEQLFSSKEVEEEAKKESTKTFM 180

Query: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GEV+K S+P EE+Q P V APTPEQIIAIKAAIVNSQTLEEVARLE+ALKSGQLPADL 
Sbjct: 181 PGEVQKVSEPTEEQQAPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 240

Query: 241 LLEDNTAPNITKDKDDKTTSGSGDE--------EHVTNDESTPMEQE 280
           + E  T     +++D++ TS + DE        E  T++E  PM+QE
Sbjct: 241 IPEVVTGAGSVEERDEEMTSTNQDEADVEQKNVEEQTDNEPAPMDQE 287

The following BLAST results are available for this feature:

BLAST of MELO3C022370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RU2A_ARATH	2.1e-101	79.92	U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 ...	[more]
RU2A_HUMAN	3.1e-57	53.36	U2 small nuclear ribonucleoprotein A' OS=Homo sapiens GN=SNRPA1 PE=1 SV=2	[more]
RU2A_MACFA	3.1e-57	53.36	U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis GN=SNRPA1 PE=2 SV=1	[more]
RU2A_MOUSE	6.9e-57	49.81	U2 small nuclear ribonucleoprotein A' OS=Mus musculus GN=Snrpa1 PE=1 SV=2	[more]
RU2A_CAEEL	3.1e-49	45.80	Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans GN=mog-...	[more]

BLAST of MELO3C022370 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB46_CUCME	2.6e-151	100.00	U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
M5XHK1_PRUPE	1.3e-118	79.30	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018334mg PE=4 S...	[more]
A0A059ADU7_EUCGR	1.7e-118	77.70	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01697 PE=4 SV=1	[more]
D7TFN0_VITVI	2.4e-117	77.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0150g00590 PE=4 SV=...	[more]
U7DXL9_POPTR	5.4e-117	78.60	U2 small nuclear ribonucleoprotein A OS=Populus trichocarpa GN=POPTR_0381s00210g...	[more]

BLAST of MELO3C022370 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09760.1	1.2e-102	79.92	U2 small nuclear ribonucleoprotein A	[more]

BLAST of MELO3C022370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119954\|ref\|XP_008459932.1\|	3.7e-151	100.00	PREDICTED: U2 small nuclear ribonucleoprotein A' [Cucumis melo]	[more]
gi\|778711690\|ref\|XP_004140564.2\|	1.4e-147	98.56	PREDICTED: U2 small nuclear ribonucleoprotein A', partial [Cucumis sativus]	[more]
gi\|645231236\|ref\|XP_008222301.1\|	9.8e-120	80.07	PREDICTED: U2 small nuclear ribonucleoprotein A' [Prunus mume]	[more]
gi\|596228279\|ref\|XP_007224240.1\|	1.8e-118	79.30	hypothetical protein PRUPE_ppa018334mg, partial [Prunus persica]	[more]
gi\|702479418\|ref\|XP_010032790.1\|	2.4e-118	77.70	PREDICTED: U2 small nuclear ribonucleoprotein A' [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001611	Leu-rich_rpt
IPR003603	U2A'_phosphoprotein32A_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0001510	RNA methylation
biological_process	GO:0009409	response to cold
biological_process	GO:0008150	biological_process
cellular_component	GO:0015030	Cajal body
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU50087	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022370T1	MELO3C022370T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU50087	MU50087	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001611	Leucine-rich repeat	PROFILE	PS51450	LRR	coord: 89..110 score: 7.288coord: 43..64 score: 6.226coord: 20..41 score: 6.657coord: 65..86 score: 5.771coord: 114..135 score: 6
IPR003603	U2A'/phosphoprotein 32 family A, C-terminal	SMART	SM00446	LRRcap_2	coord: 128..146 score: 0.
None	No IPR available	PANTHER	PTHR10552	U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 1..242 score: 1.7
None	No IPR available	PFAM	PF14580	LRR_9	coord: 1..173 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C022370	Csa6G089220	Cucumber (Chinese Long) v2	cumeB442
MELO3C022370	Cla007083	Watermelon (97103) v1	mewmB140
MELO3C022370	Cla97C06G110920	Watermelon (97103) v2	mewmbB127
MELO3C022370	Bhi12G002109	Wax gourd	mewgoB099
MELO3C022370	CSPI06G07220	Wild cucumber (PI 183967)	cpimeB433
MELO3C022370	Cucsa.349100	Cucumber (Gy14) v1	cgymeB564
MELO3C022370	CmaCh08G000310	Cucurbita maxima (Rimu)	cmameB817
MELO3C022370	CmaCh17G013900	Cucurbita maxima (Rimu)	cmameB315
MELO3C022370	CmoCh08G000340	Cucurbita moschata (Rifu)	cmomeB801
MELO3C022370	Lsi09G017790	Bottle gourd (USVL1VR-Ls)	lsimeB017
MELO3C022370	Cp4.1LG17g09550	Cucurbita pepo (Zucchini)	cpemeB284
MELO3C022370	CsGy6G007220	Cucumber (Gy14) v2	cgybmeB379
MELO3C022370	Carg03798	Silver-seed gourd	carmeB0951
MELO3C022370	CsaV3_6G007610	Cucumber (Chinese Long) v3	cucmeB444

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C022370	Cucurbita moschata (Rifu)	cmomeB308
MELO3C022370	Watermelon (Charleston Gray)	mewcgB124
MELO3C022370	Cucurbita pepo (Zucchini)	cpemeB114
MELO3C022370	Silver-seed gourd	carmeB0010