Cp4.1LG17g09550 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG17g09550
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	U2 small nuclear ribonucleoprotein a
Location	Cp4.1LG17 : 7288250 .. 7297052 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAAAATAAAAATAATAATTTTAATTGAAAATATTATGGCCAAAATTCGCCGAAGTGAGAAGCCCAAATGTGAATTATTTTGGGCCGTCTGGAAATCCATAAAGGCGCTGGCTCGGTCTGAAATTTGAACGTTGAGTCTTCTTTCGATCCACGCTGCGCTGCCTTTGATGTCGCTTGTCGCCGACGCGTTCCCTTCACTTACACTCGCCCTAAAGCCCTAAACCCCCGTCGTCGTTGTCGTCATCGTCGTCGTCCAGTGAACTAAACTCAGAAGAACATGGTGAGACTCACAGTCGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAGGAGCGAGAACTGGACCTTCGAGGTTGGCTGTCTTTTCTCAACTCTTACTTCTTTCCCTATCTCGGCCACGCATTTCTTAACTCCTTTCTTCTCGTCTCCAGGAAACAAGATAGCAGTTATAGAAAACCTAGGTGCCACCGAGGTGAGTGATTTCTACCGCTTTATTTCTCTTGTTTTAAATCTGTGCAACACCAAGATCTGTCAAGTTCGATTCCGGAGTGTTTTTACCCTGCTATGATCGTACCTAACTTCATCATACTATTTCTCCTCTCGGGTTAGTTTTGTTGTAGTCTAAACTTCAAATTAAATTCCTACCCGCTATTTTATGGGGTTAATTGTTTTTCTGGTACGTCGCCTTCCTTACATGCTGGTGAAAACCCTTCGGTGTGAGTTTTCATTTTCTTGTTTTGCTACGATCACTTGTACTATTTTGAAGGTTCAATGCAGTTTCATTTTACAAAAGACTCCAATTTTCAGCCATATGATGCTAAAATTCATTAACTAATTTAAATTTATCTTACCGAGTGTCCTATTGTTCTTTTTAACCACAACTATCAGAATCTGAGCCCGAATATCATTTTTCTATGGAGTTATGGCCTTGTCATAGAACCGCTGACCTGGAAGTACTTCTGAAAACTCGTCTTCGGTTTCGTTTTTAAGCAAAGGTTGGGGTCAAGGTTTCTTTAGAGAGAACCAAGCTTGAATGAAGAGGTGGTTCATAGTTTTCACATCCTTTCTGCATAAGTGATAGATTTGAGATTTGATGCGATGTAGAAAGCACTGGACTCCTTTGCATTCTATCTTGAGTAACAAGTCCTTAACCATATTTTTTAAAGTTGCAACTTTGCTCAGGTTGTTTGGAACCTCTATTTTGAAGTGTTTGGTTTTCAGTCTTGTAAAAACAAATGTCTTAGGGAGATGATTGAACAGTTCCTTTCCCATCGGTTGTCTTGGGAGAAGGAGATGCATTGTTGTAGGCAAGGGTTTGTGCTATGTTGCGAGACTTGTTGATATGGTAACCCTAGCTAGTTGAATAAATGCTTTGGATATGAAACCGCTAGTTCACAAATGCTAAAACCTTCAAATCAATTTGTTTTCATTCCAAATGATTGCAACTCTTGGAAATTTGATCTAACAACCTTTTTAAGAATAAGACCTTTAGATCTAAATATATCTGAGAGTCTCGAAGTAATAGAGAATCATTCCAAGGGAAAGTAAGGTTCAGATTACCTTGTTGATCGAATGTCTAAAGGATAGAATACTTGTTTGAGATTTGATCACTCCACAAGTAAGATTGATCTAGTNAAAAAGAAAAAAGAAAAAAGCTCTCGACTAAAAGAAGGCATAAATGCTCTTTTTACTAAATTTTTTAAGTCTACTTTACGTAGACAACATACATGGCTTTATATAGTATTAAAAAAAAGCCTTGACCTTCTATGAGACATTTCAAGGGTAAATGGCTTTTTATACTTTATGATCATAATTAGCCATTGTGTAAATGTAACCTTAAAGTAAATAAAAAGCCTTAAAATATATTAATGGAATACCACAACTCTAAATTATCATCCACTCAAATTTTGCAACCATCCAAGAATAAATGAAGCTTGGTTCTTCTCTAATGGTTAATTGCAACTTGAATTTATCTTATGGTAATTTGAACAACATTTTTGTTACATCTTCCTTAAAGTCATACTTTAGAGTGGTTGAGAGAGATTCTAGTGAAGTGTGGTTTCTTGTTAGGTTCTATGTTTCTCTTTGAACTTCCGTGATGAGACTGTTTTATACTTATTCTTTATGTCTTGTTTTACTTGATTGAAGCCTATTTCTTTAGTGCGGTTTCCTTTTGTAAGTTCAGTTTTTGAATGCTTATATATTCCTTCAATTTCTCTTAATGAATGTTCAATTCTTTATAGAGTATATATATATATATATATGTATGTATGTATTTATGTATAAAATAAACTCGGACCTGTTTAGGGAATTTACGGGTGTAAACCAAATAGGAGTAACTCTTATTGAATTTCCCCATTATATGCAAGAGTAGTATTTATACTAGCATAACTCTTAACCGAAACTAACAAACTTAACAAACCACTCCAACGGCTACCTACAGATTTATCATAGGATTATCTACATCACTTACCTACCCAAATGAGTTCCACGAAAGTAGAACACAACTTGGACTAATTAGAGTTTAGTTTGAGGTTAACCAACATATGAGTAGAAAGGCCATTTGAATCGAGTTTCCAAACCAATCTACCTTATCAATGCTTGGCTTTACTAGAGTGATCTTAAAAGAAAAAAAGATTCACTCTTTAATTTTCTAGCAAACAATCTTCTCCTCAAGCTTACATCCCATTGACACTCTCGGAAAGATTCTTGATGAGAGCTCCTTGGGTGTTTGGGACAGAATTATTTTGAAAAGAAACAGAAGTGGCCTCTTTTGATAACCAAAATTTAGAAAGAGTACCATCATGGAAGTTTCATAAACAAAGAATAAACTGTCTAAGAATTTGTGTCCTTTTACATGGCCTTATATACAAAAGACAATGCCCTCTGCAAATTTTCCCATGATCTTGACTGGAGTCATATTGATCATCAGCAAGCTGCCTCCCTCGAGGTCGTTTTCACCGAAGAAGAGGTGGGGAAGGCGATTTAGCATCTGGGCTTGACAAAACTCCAGGACCGGGTGCTTTTATCTCAAAATTTTTTCGCAAATGCTGGAACTTGATGAGAGCTGATATCTTGAGAGTATTCCAAGATTTTTTTTCCGAAACGGAGTTATCATTGGAAACCTAAATGAAACATACATATTTATGATCTCAAAGAAACTGGATGCCCACATTGTTGCAAACTTTCGTCTTATAATTTTCACGACTGGACTATATTAAATCATAGTAAGGATATTATCATTATATCTTAAAAAGGTTCTCCCCTTCACAAAAACCGAGCAACAATCAAATTTTTTTGAGGGGCGACAAATTCTCGATGTATCCCTCATGGAAAACAAACTCATAGATGAATGGAAAAGAAAGAAACAAAAACGTGTAGCCATCAAACTTGACATGGAAAAGGCCTTTGACAAGGTTGATTGGACTTTCCTCGAAAGCATTCTTGTGGCAAAAGGCTTTGGCTCAAAATGGTGAAGGTGGATAATAGGATGCATCTCATCCACAAACTTCTCCACCATCATCAATGGAAGTTCGAGAGGGAAGATTTATGCCACTCGTGGTCTCCGACAAGGAGATCCACTGTCCCCTCTTCTTTTCATCATGGTAATGGACGGCCGACTGACAAAAGCAGAATGCGAAGGGCAGATAAAAGGTTTTCAAATTGGTATGAAGGCTTAAGCATCAACCACCTTCAGTTCGTGGACGACACAATCCTCTTTTCTGATTTGGCAGATGCCTCTTCCATAAAAAAACATAGTCGAGATGGTAAAAACCTTTGAAAGATTCTTTGGACTATCAATCTTCAAGAAACAAAGATCTTAGGCATCAATATTAGCACGAAGATTATTGAATAATTTACTAGCATATGTGGTTGTAAACAAGGAGAATGATCGAATATGTACCTAGGACCACCTCTAAAAGGAAACCGCAGATCTTTTTTCTTCTGGAAGATTATTATTGAAAAAATAGAAAGAAGGTTGTCAACAAAAAGTGGCCACTGATATAGAAAAACTATTCAGAAACTACTTGTGGAAAGATAACCCACACCTTGCCAAATGGATATGGGGATATCATCACGAAGATTAGGCATTGTGGAGAAATCTTATAAAGGCCAAATATACTCCTACATCAACCCCCCNCCCCCCCCCCCCCCCCTCTCTTCTACAAAAGAGCCTGGGAAGTACCTAAAGAAACATCAAAACCTCATCACCAACCGAACTTGCCATAGAGTGGGTGATGGAGGAAACACATCATTTTGGACCGACCCATGGATTGAAAACACCACACTAGCCTTGAGGTATCCACCTTTGTATAGGCTCTCTCATAGCAAAAAAGCCACAATCAAAGAAACGTAGAATGTTGTCAACAAATTCTGGGACCTTAAGTTTGGTAGGAATTTAAAGGATAATGAAGCAACAGAATGGGCCGAATTAAGCCTTGCCCTCGCCCCTGTGGTATTGTCAAACGCAGCAGACTCATTGACTTGGCTCTCCCGTGTTGACGGGGTCTTCTCTACAAAATCTTTGATGATCGACATGGAGAAAAAAGTAGAAGTGATAAATCCCACGCTCAATGACAGTATGGAAAGGACATCATCCTAAAAAGGTGAAGTTCTTCCTTGGGGAAATAGCACATAAAGCCATTATCACAAGTGAAAATCTTCAAAAAAAAGAATGTCTTACATTATTCTTTCTCCAAATTGGTGTCCATTATGCAAGAAAAAAAGTGAACCACTTATTTATGCAATGCACATATGCTCAAAATTTCTGGACAACGATTCTCAATATATTCAGATGACATCTCACATTTCCTAGGGAGGTAAAAGATCTATTGGACATGACCTTAACGTACCACCCTTTCTAGAATACAAAAGTCCTACTATGGAAAAGCCTCATCCCGACTTTCTTTAGAAATATGTGGAAAGAAAGAAACCAGAGAATATTCACAGAAAAGACATGGACTTGTACAAAACTTTTCGACAATATTGTTTACCAAGCTATATCTTGGTGTTAACTGTCTAATATTTTTACTTCCTATAGTTATACCTCCCTCATTGTAAATTGGGAAGGTCTTTTATACACCAGGGATATTACATCCCTTTTGTAAATTTCAATCGTCAATAAAATGACCTCTTTTATATATATATATATATATTTTTTAAGTATGTCTCTCATGTAAACTTAATTGAAAATACAAGTTTGCAACGAGCCTGTAGTTTCGGAAACTCCATGGCTAAAAGTCACCTCCATGGCTAAAAGTCAACTCCATGATCACCTGATTGGATAAGAACCATATTTACTGTATAAAACTTTTCACCGAAAGCCTCCTCATGAAAGTATCTCCATAGCCACCTTATCAGTAAGGCTTCTTCATTGTGTCTCAGGTATCCCATGTTCAATCCACCTAAAGAAATAGGGACTCTGGAAGTGCAGCCCACTTCCACTTGACTAAGTGACAACCTTAATTTAAGTTTTGTAAATAACATTCTCATTCTTATGTCTTAAGCTTCCAGGGTTGATTTCTCACTACCCTTGAGTACTTTGTTTTCAATTGAATAGAAATGATGTTCCTTAATCCTTTATTTGAAAGATTTAGTCCAAAGTCTCTTGCAATATTGAGTTGGACTTGTGTTTGTTCACCTTATTCTTCCTTTCCAAGAGCCNGAAAAAAGCAAAGAAAATAAAGTGCTGCCACCAAAAGTCTCTAGAAGGGTTTCCTGTTAAAAGAACTCATAAAATATATTTGCACCGAGGCCTCCAACCTTGTGGTGAGTGTATGTGTGCGCGCGGGGGTGGGGGAGGGGTGCACCAGCACACCACTAAGTTGCTTGAGAATTAGAGTGCCTTAAAGTAGAAGTAAAAAGACCATAATATTAAAAGGTGGACCGAAGTTTCATTTTCTTTTTGACAAAACAATGCCCCCATCTGTTAAATTGGACAGAATATATCAAGAAGGTGGCACCCTCACACAGTGGGCTAAATTTCATTAATATTCTTAACTTGAAAGTGCTTTCTCATCTAAACCCTAAGTTTCCCATTCCTTTTGCTGGTTGTACGAGGATAAAAAGTTTGTTAACTTATCTGGCTCTGCCAAAAGTGAAAGAAAGTGATGTCTACTCTTGGTTTTCTTTTATTTGTAACCATATAATGTTAGATTTCCTTGACCATAAATTTCAGGACCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCATATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGTATTAATCCAAATATTGGAGGTGAGCTTTCCATTATGCTTTAGCAATCTTGTTTTTGGAAGTAAGTGTTTTAAAAAAGTTTATTTCTTCATTCTTGCCAGAGTTCTTACCAAAATTACACACGTTGGTTCTTACGAACAACAGACTTGTGAACTTGGTAGAGATTGACCCGTTGGCATCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTAGACAACAATATTACGAAGAAGCCAAACTATAGATTGTATGTCATTCACAAGTTAAGGTCACTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGTAACTTATTCCTGCATTCAAATCTTATTATTGATAAAATGGCTGTATCTTAACATATGTTTGTAAATTCTTAAACTTCATTCGATAATAATTTTATTTTGGTTTAAGAAGTTATTTTTAAAATTTTAGCCAATGGTTCTCTATTATAAAATCTTAACATATGTTTGTAAATTCTTAGATTTCTTGCGATAAAAAAAGATAAAGAAATAAAGAAACCACCTACATTCATGTACGATACATTAATAGATATCTCCTGCCCCCTACATCTCTTCATTTCTTAACGGCAATGGCAGGAGAGATTGGAGGCTAGGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCAAAAAAGGAATCTGTGAAGACTTTTGTTCCAGGTGAGGTAGAGAATGCATCCAAACCTGTGGAGGAGAAACAAACTTCAACCATGTCTGCACCAACACCGGAGCAAATTATAGCTATTAAGGTGTGTACATTTTATACTATCTAAAGTTTAAGATCTCTTTCACTGAAACATATGTTTGCAAGTTGTTAAGATCTTCTGTTTTCTTACTGTTTAACTTTGTAGAGATTTTTAGGGCCTGCTACTTTTCTTTTCTGGGAAGAGGGCAAGTTCCAAAACTTTTACTATTGATTATCATTTCCTCACAAAAAAAGTATGACAAGGTGGTTATCGATGGATCTTCATCCTCCCTTCTCCCTCTGGTCTAAGGAGCTCTTTCTATTCTAGGTTGGAGAGTCTTGTGTTTTTTATCTTGAGTTTGTCTCTTTCTTGTGTAAATCATTTTCTCTCGATTCCTTCTCATCCTCGTTCTCACACCCTTTTGAAGCTAAACTTTATAACTTGGAGGTGGAAGGTGGTCAATTTTTCTTCAAGGCAGTCATAGATGGGAGGAACTATCCTTTAACTTTATCCAGAGATATCTTTTAGTATGTGATGCCTAGAAATAGGACAATTATGTTCCAAATGTAGAAATAAAATTTGTAGGATATAATTTAGAATTTTATTTATTTTCTAGAATCTAATTATTCTAATTATAAATCAATTATTCTTGATTCTTATTTTTAATCAAAAGTGATCAGTTAAAATTAAAGAAATTAAATCGAATAATCAATTTTTAGGGGGTCTTTTATAAATTGGGTAGGACCCGACTTTGTTATTAATTATGGGTATTTTTGTTGGCGGGCTTATTTTTATTGACCACCTTATGTTTCCAATTATGTTGTGCGATCAATTAACTCTCTATGTTACAGGCGGCCATTGTTAATTCCCAAACTCTTGAAGAGGTTGCAAGATTGGAACAGGTGTGCTTGGTTTTCTATTGTAAAAGAAGAAAAAGGAAAAAAAAAAAGATCTCTATTTAAATGTTAGTATGAGAATCATAACGTTCAAGAATTGTTCTTTGTTGCCAGGCACTAAAGTCAGGTCAGCTACCTGCAGATTTGAATCTTTTGGAAGATAATACTGTGACAAATACCACAAAAGATACAGACGATAAGACAATGTCTGATGGTGGAGATGAAGAAAATGTATCCAAGGATGCAAAAGAACAATCGAATGATGAATCTACACCTATGGAGCAGGTACCACTACTTTTATGCTAAATGAGTGATGCCTTTGTGCTGTTTTATTTTTTTTTATTTTTTTTAAAGCTCATATGTAAACTCAATACACGCCCCTCGTGCGGTTGTTTTCTCTCATTCCTGGTAAAGCTTGTTATCGCAAGCACATGTCTATTTATATAGCTAAGCTGTTCTAATATACAGTTAATTTTATGTAGGAATAGTAGATGATAATCGTTGCTCGTACTACTTGGTGGCTCATCTATTAGCTTTCATCGATTGGTGATCCTGTTGGGCTGATTTGTGGACATTTTAAAGAACTTTTTGAGAAGTCCAAGCATGTCACATCTCAGCCTGGGGACGTTAGACCTCTACTTCGCCTCTTTTTTAGGAGTTGGTTCTTTTTCTCCCTTCTAGTTTCTTTTCCTTGTTTGGGTAAAGAATTTTTTAAATATATGTATGGATAGATATCAGAGACGTGATGTGGTTTATGTTGTATCTACGACACTCGTAATTGCTTTGAATTTTTCTTCTTTAAAAAATGTACGGATATTTGGCATAGATACCAGGACTTGCAGAGTTAGCCTCTTTTTTCGTCTAACTTTAACATTTTTGCGAATATAGAATAAACTTGTAT

mRNA sequence

TGAAAAATAAAAATAATAATTTTAATTGAAAATATTATGGCCAAAATTCGCCGAAGTGAGAAGCCCAAATGTGAATTATTTTGGGCCGTCTGGAAATCCATAAAGGCGCTGGCTCGGTCTGAAATTTGAACGTTGAGTCTTCTTTCGATCCACGCTGCGCTGCCTTTGATGTCGCTTGTCGCCGACGCGTTCCCTTCACTTACACTCGCCCTAAAGCCCTAAACCCCCGTCGTCGTTGTCGTCATCGTCGTCGTCCAGTGAACTAAACTCAGAAGAACATGGTGAGACTCACAGTCGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAGGAGCGAGAACTGGACCTTCGAGGAAACAAGATAGCAGTTATAGAAAACCTAGGTGCCACCGAGGACCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCATATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGTATTAATCCAAATATTGGAGAGTTCTTACCAAAATTACACACGTTGGTTCTTACGAACAACAGACTTGTGAACTTGGTAGAGATTGACCCGTTGGCATCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTAGACAACAATATTACGAAGAAGCCAAACTATAGATTGTATGTCATTCACAAGTTAAGGTCACTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCAAAAAAGGAATCTGTGAAGACTTTTGTTCCAGGTGAGGTAGAGAATGCATCCAAACCTGTGGAGGAGAAACAAACTTCAACCATGTCTGCACCAACACCGGAGCAAATTATAGCTATTAAGGCGGCCATTGTTAATTCCCAAACTCTTGAAGAGGTTGCAAGATTGGAACAGGCACTAAAGTCAGGTCAGCTACCTGCAGATTTGAATCTTTTGGAAGATAATACTGTGACAAATACCACAAAAGATACAGACGATAAGACAATGTCTGATGGTGGAGATGAAGAAAATGTATCCAAGGATGCAAAAGAACAATCGAATGATGAATCTACACCTATGGAGCAGGAATAGTAGATGATAATCGTTGCTCGTACTACTTGGTGGCTCATCTATTAGCTTTCATCGATTGGTGATCCTGTTGGGCTGATTTGTGGACATTTTAAAGAACTTTTTGAGAAGTCCAAGCATGTCACATCTCAGCCTGGGGACGTTAGACCTCTACTTCGCCTCTTTTTTAGGAGTTGGTTCTTTTTCTCCCTTCTAGTTTCTTTTCCTTGTTTGGGTAAAGAATTTTTTAAATATATGTATGGATAGATATCAGAGACGTGATGTGGTTTATGTTGTATCTACGACACTCGTAATTGCTTTGAATTTTTCTTCTTTAAAAAATGTACGGATATTTGGCATAGATACCAGGACTTGCAGAGTTAGCCTCTTTTTTCGTCTAACTTTAACATTTTTGCGAATATAGAATAAACTTGTAT

Coding sequence (CDS)

ATGGTGAGACTCACAGTCGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAGGAGCGAGAACTGGACCTTCGAGGAAACAAGATAGCAGTTATAGAAAACCTAGGTGCCACCGAGGACCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCATATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGTATTAATCCAAATATTGGAGAGTTCTTACCAAAATTACACACGTTGGTTCTTACGAACAACAGACTTGTGAACTTGGTAGAGATTGACCCGTTGGCATCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTAGACAACAATATTACGAAGAAGCCAAACTATAGATTGTATGTCATTCACAAGTTAAGGTCACTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCAAAAAAGGAATCTGTGAAGACTTTTGTTCCAGGTGAGGTAGAGAATGCATCCAAACCTGTGGAGGAGAAACAAACTTCAACCATGTCTGCACCAACACCGGAGCAAATTATAGCTATTAAGGCGGCCATTGTTAATTCCCAAACTCTTGAAGAGGTTGCAAGATTGGAACAGGCACTAAAGTCAGGTCAGCTACCTGCAGATTTGAATCTTTTGGAAGATAATACTGTGACAAATACCACAAAAGATACAGACGATAAGACAATGTCTGATGGTGGAGATGAAGAAAATGTATCCAAGGATGCAAAAGAACAATCGAATGATGAATCTACACCTATGGAGCAGGAATAG

Protein sequence

MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQE

Homology

[Close]

BLAST of Cp4.1LG17g09550 vs. Swiss-Prot
Match: RU2A_ARATH (U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 SV=2)

HSP 1 Score: 356.3 bits (913), Expect = 3.1e-97
Identity = 190/239 (79.50%), Postives = 209/239 (87.45%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN 
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPN+GEFLPKLH+LVLTNNRLVNLVEIDPLAS+PKLQ+LSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKK NYRLYVIHKL+SLRVLDF K++ KER EA +LFSSKE EEE KK S +   
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSRE--- 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 240
             EV+  S+  E  +T  + APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Sbjct: 181 --EVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGL 234

[Close]

BLAST of Cp4.1LG17g09550 vs. Swiss-Prot
Match: RU2A_HUMAN (U2 small nuclear ribonucleoprotein A' OS=Homo sapiens GN=SNRPA1 PE=1 SV=2)

HSP 1 Score: 213.4 bits (542), Expect = 3.3e-54
Identity = 132/261 (50.57%), Postives = 170/261 (65.13%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FVPGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPA- 240
           F PG    A  P ++K+      P+P  + AIK AI N+ TL EV RL+  L+SGQ+P  
Sbjct: 181 FNPG----AGLPTDKKK----GGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGR 240

Query: 241 ---------DLNLLEDNTVTN 250
                        +E++TVTN
Sbjct: 241 ERRSGPTDDGEEEMEEDTVTN 253

[Close]

BLAST of Cp4.1LG17g09550 vs. Swiss-Prot
Match: RU2A_MACFA (U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis GN=SNRPA1 PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 3.3e-54
Identity = 132/261 (50.57%), Postives = 170/261 (65.13%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FVPGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPA- 240
           F PG    A  P ++K+      P+P  + AIK AI N+ TL EV RL+  L+SGQ+P  
Sbjct: 181 FNPG----AGLPTDKKK----GGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGR 240

Query: 241 ---------DLNLLEDNTVTN 250
                        +E++TVTN
Sbjct: 241 ERRSGPTDDGEEEMEEDTVTN 253

[Close]

BLAST of Cp4.1LG17g09550 vs. Swiss-Prot
Match: RU2A_MOUSE (U2 small nuclear ribonucleoprotein A' OS=Mus musculus GN=Snrpa1 PE=1 SV=2)

HSP 1 Score: 211.8 bits (538), Expect = 9.5e-54
Identity = 132/261 (50.57%), Postives = 169/261 (64.75%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FVPGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPA- 240
           F PG    A  P ++K+      P+   + AIK AI N+ TL EV RL+  L+SGQ+P  
Sbjct: 181 FNPG----AGLPTDKKK----GGPSAGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGR 240

Query: 241 ---------DLNLLEDNTVTN 250
                        +ED+TVTN
Sbjct: 241 ERRSGPSDEGEEEIEDDTVTN 253

[Close]

BLAST of Cp4.1LG17g09550 vs. Swiss-Prot
Match: RU2A_CAEEL (Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans GN=mog-2 PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.8e-45
Identity = 108/238 (45.38%), Postives = 153/238 (64.29%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT +L  + P F N++  RE++LRG KI VIEN+G T DQFD IDL+DN+I KL+N 
Sbjct: 1   MVRLTTELFAERPQFVNSVNMREINLRGQKIPVIENMGVTRDQFDVIDLTDNDIRKLDNF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           P  +RL TL ++NNRI  I P+I   LP L TL LTNN +  L +I+PLA   KL++++ 
Sbjct: 61  PTFSRLNTLYLHNNRINYIAPDIATKLPNLKTLALTNNNICELGDIEPLAECKKLEYVTF 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEE--EAKKESVKT 180
           + N IT K NYR+Y+I+KL ++RV+DF +VR  ER  A+ +F  K  ++  +A ++SV T
Sbjct: 121 IGNPITHKDNYRMYMIYKLPTVRVIDFNRVRLTEREAAKKMFKGKSGKKARDAIQKSVHT 180

Query: 181 FVPGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 237
             P E+E       E  +   +  T E    IK AI N+++L EV  L+  L SG++P
Sbjct: 181 EDPSEIE-----PNENSSGGGARLTDEDREKIKEAIKNAKSLSEVNYLQSILASGKVP 233

[Close]

BLAST of Cp4.1LG17g09550 vs. TrEMBL
Match: E5GB46_CUCME (U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 1.8e-131
Identity = 261/286 (91.26%), Postives = 266/286 (93.01%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GEVE ASKPVEEKQT  +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQE 287
           LLEDNT  N TKD DDKT S  GDEE+V       +NDESTPMEQE
Sbjct: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE 279

[Close]

BLAST of Cp4.1LG17g09550 vs. TrEMBL
Match: M5XHK1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018334mg PE=4 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 1.3e-118
Identity = 233/285 (81.75%), Postives = 251/285 (88.07%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT DL+WKSPHFFNA+KERELDLRGNKIAVIENLGATEDQFD IDLSDNEIVKLEN+
Sbjct: 1   MVRLTADLVWKSPHFFNALKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENL 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTL+INNNRITRINPNIGEFLPKLHTL+LTNNRLVNLVEIDPL SLPKLQFLSL
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEFLPKLHTLILTNNRLVNLVEIDPLESLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKL+SLRVLDFKKV+NKERLEA+ LFSSKEVEEE KK S KTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVKNKERLEAQTLFSSKEVEEETKKVSAKTFV 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           P EV N S   EE+QT  + APTPEQI+AIKAAIVNSQTLEEVARLEQALKSGQLPADL 
Sbjct: 181 PTEVPNVSDVAEEQQTPKVVAPTPEQIMAIKAAIVNSQTLEEVARLEQALKSGQLPADLK 240

Query: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ 286
           +L+D+T TN+ K  DDK   +  +E N  KD  EQ  DE+ PMEQ
Sbjct: 241 ILDDDTETNSVKVNDDKMEVNSENEANAPKDVDEQKKDEAEPMEQ 285

[Close]

BLAST of Cp4.1LG17g09550 vs. TrEMBL
Match: A0A059ADU7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01697 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 4.8e-113
Identity = 224/287 (78.05%), Postives = 252/287 (87.80%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRL+ DLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFD IDLSDNEIVKLEN 
Sbjct: 1   MVRLSADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPKLHTL+LTNNRLVNL EIDPLASLP+LQ+L L
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLILTNNRLVNLAEIDPLASLPRLQYLGL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNN+TKKPNYRLYVIHKL+SLRVLDF+KV++KERLEA  LFSSKEVEEEAKKES KTF+
Sbjct: 121 LDNNVTKKPNYRLYVIHKLKSLRVLDFRKVKSKERLEAEQLFSSKEVEEEAKKESTKTFM 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGEV+  S+P EE+Q   + APTPEQIIAIKAAIVNSQTLEEVARLE+ALKSGQLPADL 
Sbjct: 181 PGEVQKVSEPTEEQQAPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 240

Query: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENV-SKDAKEQSNDESTPMEQE 287
           + E  T   + ++ D++  S   DE +V  K+ +EQ+++E  PM+QE
Sbjct: 241 IPEVVTGAGSVEERDEEMTSTNQDEADVEQKNVEEQTDNEPAPMDQE 287

[Close]

BLAST of Cp4.1LG17g09550 vs. TrEMBL
Match: U7DXL9_POPTR (U2 small nuclear ribonucleoprotein A OS=Populus trichocarpa GN=POPTR_0381s00210g PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 4.8e-113
Identity = 227/286 (79.37%), Postives = 252/286 (88.11%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLENM
Sbjct: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTL+INNNRITRINPNIGE+LPKLHTLVLTNNRLVNL EIDPL+SLPKLQFLSL
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDN ITKKPNYRLYVIHKL+SLRVLDFKKV+ KER EA +LFSSKEVEEEAK+ESVKTF 
Sbjct: 121 LDNTITKKPNYRLYVIHKLKSLRVLDFKKVKAKERAEAEHLFSSKEVEEEAKRESVKTFT 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGE+ N  +  EE+Q   + APTPEQIIAIKAAIVNSQTLEEVARLE+AL SGQLPADL 
Sbjct: 181 PGEIPNIPEVAEEQQAPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALNSGQLPADLK 240

Query: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQE 287
           +L+D T +N+ K+ DDK  +D  +E   + + +EQ ++E+TPMEQE
Sbjct: 241 ILDD-TGSNSVKEQDDKMATDSQNEAEPN-NLEEQKDNEATPMEQE 284

[Close]

BLAST of Cp4.1LG17g09550 vs. TrEMBL
Match: B9RG43_RICCO (U2 small nuclear ribonucleoprotein A, putative OS=Ricinus communis GN=RCOM_1439000 PE=4 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 1.1e-112
Identity = 222/287 (77.35%), Postives = 252/287 (87.80%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLENM
Sbjct: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYL RLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLTRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDN+ITKKPNYRLY+IHKL+SLRVLDFKKV++KER+EA NLF+SKEVEEEA +ES KTF+
Sbjct: 121 LDNSITKKPNYRLYIIHKLKSLRVLDFKKVKSKERMEAENLFASKEVEEEAIRESAKTFI 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGEV N ++  EE+Q   + APTPEQIIAIKAAIVNSQTLEEVARLE+AL SGQ+P DLN
Sbjct: 181 PGEVPNVTEDAEEQQNPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALNSGQIPTDLN 240

Query: 241 LLEDNTVTNTTKDTDDKTMSDGGDE-ENVSKDAKEQSNDESTPMEQE 287
           + ++++  NT ++ DDK  +DG ++ ++   +  EQ + +S  MEQE
Sbjct: 241 IFDNDSELNTVQEKDDKMATDGDNKTDHEPSNLDEQKDSDSASMEQE 287

[Close]

BLAST of Cp4.1LG17g09550 vs. TAIR10
Match: AT1G09760.1 (AT1G09760.1 U2 small nuclear ribonucleoprotein A)

HSP 1 Score: 356.3 bits (913), Expect = 1.8e-98
Identity = 190/239 (79.50%), Postives = 209/239 (87.45%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN 
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPN+GEFLPKLH+LVLTNNRLVNLVEIDPLAS+PKLQ+LSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKK NYRLYVIHKL+SLRVLDF K++ KER EA +LFSSKE EEE KK S +   
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSRE--- 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 240
             EV+  S+  E  +T  + APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Sbjct: 181 --EVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGL 234

[Close]

BLAST of Cp4.1LG17g09550 vs. NCBI nr
Match: gi|778711690|ref|XP_004140564.2| (PREDICTED: U2 small nuclear ribonucleoprotein A', partial [Cucumis sativus])

HSP 1 Score: 483.0 bits (1242), Expect = 3.5e-133
Identity = 263/285 (92.28%), Postives = 268/285 (94.04%), Query Frame = 1


Query: 2   VRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMP 61
           VRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMP
Sbjct: 13  VRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMP 72

Query: 62  YLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSLL 121
           YLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLSLL
Sbjct: 73  YLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSLL 132

Query: 122 DNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVP 181
           DNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVP
Sbjct: 133 DNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVP 192

Query: 182 GEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNL 241
           GEVE ASKPVEEKQT  +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNL
Sbjct: 193 GEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNL 252

Query: 242 LEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQE 287
           LEDNT  N TKD DDKTMSD GDEE+V       +NDESTPMEQE
Sbjct: 253 LEDNTAQNITKDKDDKTMSDSGDEEHV-------TNDESTPMEQE 290

[Close]

BLAST of Cp4.1LG17g09550 vs. NCBI nr
Match: gi|659119954|ref|XP_008459932.1| (PREDICTED: U2 small nuclear ribonucleoprotein A' [Cucumis melo])

HSP 1 Score: 476.9 bits (1226), Expect = 2.5e-131
Identity = 261/286 (91.26%), Postives = 266/286 (93.01%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GEVE ASKPVEEKQT  +SAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQE 287
           LLEDNT  N TKD DDKT S  GDEE+V       +NDESTPMEQE
Sbjct: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE 279

[Close]

BLAST of Cp4.1LG17g09550 vs. NCBI nr
Match: gi|645231236|ref|XP_008222301.1| (PREDICTED: U2 small nuclear ribonucleoprotein A' [Prunus mume])

HSP 1 Score: 437.2 bits (1123), Expect = 2.2e-119
Identity = 236/286 (82.52%), Postives = 253/286 (88.46%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT DL+WKSPHFFNA+KERELDLRGNKIAVIENLGATEDQFD IDLSDNEIVKLEN+
Sbjct: 1   MVRLTADLVWKSPHFFNALKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENL 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTL+INNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKL+SLRVLDFKKV+NKERLEA+ LFSSKEVEEE KK S KTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVKNKERLEAQTLFSSKEVEEETKKVSAKTFV 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           P EV N S   EE+QT  + APTPEQI+AIKAAIVNSQTLEEVARLEQALKSGQLPADL 
Sbjct: 181 PTEVPNVSDVAEEQQTPKVVAPTPEQIMAIKAAIVNSQTLEEVARLEQALKSGQLPADLK 240

Query: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQE 287
           +L+D+T TN+ K  DDK   +  +E N  KD  EQ  DE+ PMEQE
Sbjct: 241 ILDDDTETNSVKVNDDKMDVNSENEANAPKDVDEQKKDEAEPMEQE 286

[Close]

BLAST of Cp4.1LG17g09550 vs. NCBI nr
Match: gi|596228279|ref|XP_007224240.1| (hypothetical protein PRUPE_ppa018334mg, partial [Prunus persica])

HSP 1 Score: 434.1 bits (1115), Expect = 1.9e-118
Identity = 233/285 (81.75%), Postives = 251/285 (88.07%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT DL+WKSPHFFNA+KERELDLRGNKIAVIENLGATEDQFD IDLSDNEIVKLEN+
Sbjct: 1   MVRLTADLVWKSPHFFNALKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENL 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTL+INNNRITRINPNIGEFLPKLHTL+LTNNRLVNLVEIDPL SLPKLQFLSL
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEFLPKLHTLILTNNRLVNLVEIDPLESLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKL+SLRVLDFKKV+NKERLEA+ LFSSKEVEEE KK S KTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVKNKERLEAQTLFSSKEVEEETKKVSAKTFV 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           P EV N S   EE+QT  + APTPEQI+AIKAAIVNSQTLEEVARLEQALKSGQLPADL 
Sbjct: 181 PTEVPNVSDVAEEQQTPKVVAPTPEQIMAIKAAIVNSQTLEEVARLEQALKSGQLPADLK 240

Query: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ 286
           +L+D+T TN+ K  DDK   +  +E N  KD  EQ  DE+ PMEQ
Sbjct: 241 ILDDDTETNSVKVNDDKMEVNSENEANAPKDVDEQKKDEAEPMEQ 285

[Close]

BLAST of Cp4.1LG17g09550 vs. NCBI nr
Match: gi|566256109|ref|XP_006388045.1| (U2 small nuclear ribonucleoprotein A' [Populus trichocarpa])

HSP 1 Score: 415.6 bits (1067), Expect = 6.9e-113
Identity = 227/286 (79.37%), Postives = 252/286 (88.11%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLENM
Sbjct: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120
           PYLNRLGTL+INNNRITRINPNIGE+LPKLHTLVLTNNRLVNL EIDPL+SLPKLQFLSL
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDN ITKKPNYRLYVIHKL+SLRVLDFKKV+ KER EA +LFSSKEVEEEAK+ESVKTF 
Sbjct: 121 LDNTITKKPNYRLYVIHKLKSLRVLDFKKVKAKERAEAEHLFSSKEVEEEAKRESVKTFT 180

Query: 181 PGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGE+ N  +  EE+Q   + APTPEQIIAIKAAIVNSQTLEEVARLE+AL SGQLPADL 
Sbjct: 181 PGEIPNIPEVAEEQQAPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALNSGQLPADLK 240

Query: 241 LLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQE 287
           +L+D T +N+ K+ DDK  +D  +E   + + +EQ ++E+TPMEQE
Sbjct: 241 ILDD-TGSNSVKEQDDKMATDSQNEAEPN-NLEEQKDNEATPMEQE 284

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g09550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RU2A_ARATH	3.1e-97	79.50	U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 ...	[more]
RU2A_HUMAN	3.3e-54	50.57	U2 small nuclear ribonucleoprotein A' OS=Homo sapiens GN=SNRPA1 PE=1 SV=2	[more]
RU2A_MACFA	3.3e-54	50.57	U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis GN=SNRPA1 PE=2 SV=1	[more]
RU2A_MOUSE	9.5e-54	50.57	U2 small nuclear ribonucleoprotein A' OS=Mus musculus GN=Snrpa1 PE=1 SV=2	[more]
RU2A_CAEEL	2.8e-45	45.38	Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans GN=mog-...	[more]

BLAST of Cp4.1LG17g09550 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB46_CUCME	1.8e-131	91.26	U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
M5XHK1_PRUPE	1.3e-118	81.75	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018334mg PE=4 S...	[more]
A0A059ADU7_EUCGR	4.8e-113	78.05	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01697 PE=4 SV=1	[more]
U7DXL9_POPTR	4.8e-113	79.37	U2 small nuclear ribonucleoprotein A OS=Populus trichocarpa GN=POPTR_0381s00210g...	[more]
B9RG43_RICCO	1.1e-112	77.35	U2 small nuclear ribonucleoprotein A, putative OS=Ricinus communis GN=RCOM_14390...	[more]

BLAST of Cp4.1LG17g09550 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09760.1	1.8e-98	79.50	U2 small nuclear ribonucleoprotein A	[more]

BLAST of Cp4.1LG17g09550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778711690\|ref\|XP_004140564.2\|	3.5e-133	92.28	PREDICTED: U2 small nuclear ribonucleoprotein A', partial [Cucumis sativus]	[more]
gi\|659119954\|ref\|XP_008459932.1\|	2.5e-131	91.26	PREDICTED: U2 small nuclear ribonucleoprotein A' [Cucumis melo]	[more]
gi\|645231236\|ref\|XP_008222301.1\|	2.2e-119	82.52	PREDICTED: U2 small nuclear ribonucleoprotein A' [Prunus mume]	[more]
gi\|596228279\|ref\|XP_007224240.1\|	1.9e-118	81.75	hypothetical protein PRUPE_ppa018334mg, partial [Prunus persica]	[more]
gi\|566256109\|ref\|XP_006388045.1\|	6.9e-113	79.37	U2 small nuclear ribonucleoprotein A' [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR003603	U2A'_phosphoprotein32A_C
IPR001611	Leu-rich_rpt

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0001510	RNA methylation
biological_process	GO:0009409	response to cold
biological_process	GO:0008150	biological_process
cellular_component	GO:0015030	Cajal body
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g09550.1	Cp4.1LG17g09550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001611	Leucine-rich repeat	PROFILE	PS51450	LRR	coord: 114..135 score: 6.588coord: 89..110 score: 7.05coord: 65..86 score: 5.771coord: 20..41 score: 6.657coord: 43..64 score: 6
IPR003603	U2A'/phosphoprotein 32 family A, C-terminal	SMART	SM00446	LRRcap_2	coord: 128..146 score: 0.
None	No IPR available	PANTHER	PTHR10552	U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 1..284 score: 6.0E
None	No IPR available	PFAM	PF14580	LRR_9	coord: 1..173 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG17g09550	Cucsa.349100	Cucumber (Gy14) v1	cgycpeB0911
Cp4.1LG17g09550	CmaCh17G013900	Cucurbita maxima (Rimu)	cmacpeB389
Cp4.1LG17g09550	CmaCh08G000310	Cucurbita maxima (Rimu)	cmacpeB914
Cp4.1LG17g09550	CmoCh08G000340	Cucurbita moschata (Rifu)	cmocpeB851
Cp4.1LG17g09550	Cla007083	Watermelon (97103) v1	cpewmB341
Cp4.1LG17g09550	Csa6G089220	Cucumber (Chinese Long) v2	cpecuB322
Cp4.1LG17g09550	MELO3C022370	Melon (DHL92) v3.5.1	cpemeB284
Cp4.1LG17g09550	CSPI06G07220	Wild cucumber (PI 183967)	cpecpiB323
Cp4.1LG17g09550	Lsi09G017790	Bottle gourd (USVL1VR-Ls)	cpelsiB249
Cp4.1LG17g09550	MELO3C022370.2	Melon (DHL92) v3.6.1	cpemedB332
Cp4.1LG17g09550	CsaV3_6G007610	Cucumber (Chinese Long) v3	cpecucB0403
Cp4.1LG17g09550	Bhi12G002109	Wax gourd	cpewgoB0389
Cp4.1LG17g09550	CsGy6G007220	Cucumber (Gy14) v2	cgybcpeB783
Cp4.1LG17g09550	Carg03798	Silver-seed gourd	carcpeB1359

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG17g09550	Cucurbita pepo (Zucchini)	cpecpeB170
Cp4.1LG17g09550	Cucurbita moschata (Rifu)	cmocpeB352
Cp4.1LG17g09550	Watermelon (Charleston Gray)	cpewcgB298
Cp4.1LG17g09550	Silver-seed gourd	carcpeB0022