Cucsa.349100 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.349100
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	U2 small nuclear ribonucleoprotein a
Location	scaffold03487 : 429768 .. 434665 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCACGCACCGGTCTTTTGCTGTCGTCTCTCGTCGACGCCTTCCCTTCTCTTCCTAAAGCCCTAAACCCCGTCGTCGTCGAAGAAGAAGAAGAAGAAGAAGATGGTGAGACTGACGGTCGATTTAATTTGGAAAAGCCCTCATTTTTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTTCTCTAACTTTTCTCAACTCTTCCTTCTTTCACACTCTCCATCACGCATTTCCTTCTTAACTCTTTTCTTCTTCTTCTTCTCTCAGGTAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGTGAGTCATTCCCACTGCCTCCTTATTATCTCTTTCTTTTAAATTTCTGGAACTCGAACATAGATTTAAATTATATTTACATGCTGGCGAGAATCGTTCTGCAAATTCAACTTCACTTCAAATTAGTAATAACAGTTCTCAATTTCTCTATACCATTACGAAGTTTGTTTGAAGTTTCGTTTTCCTTGAAGACAGCCTAATAAACTCTAATTTGAGGCCATATGCTTTGCATTTTCCCTTGAGTCATAAGAGTTTTAAATTTTATCATATTGAGGATTCAATTGTCGCTTTTAACCACAAGGATCAGATTTGAGTACTAATAGTTTTTTtCCCATAGAATTATGGCTGGTTACCACCTACCCGAGAGGACTTTTGAAAAGTAATGTTCCGTATCCTTTTTGTAAGGCAGAAGTTGGGGTCAAGATTTCTTTAGAGAGAACCCAGCTCACAGTGAATGAAGAGGTGGTTGTGGTTCATAGTTTTCACATCTTTTCTGCATATGATTGATAGATATGAGATGTTAGGCTATATAGAAAGTGATGACCTCCTTTGCCTTCTGTCTTGAGATTAACACTTATGTAGGCCGTAAATATAAAACCTGTTAGGGAGCTTACTGGTGTAAACCAATCAGTATTTTTTtCTTGAATCAAAATTGTGCCCTTTTACCAAGAGGACTACTATTTATACTAGTCTTTCTCTTAACCAGAAATAGCAAGCTTAACTAACTACTCTAACAGCTAACAACCAACTTTCCCAACATCCATATCAACTGAAAATTTACCCACATCACTCACGTTCCAAAATAAGCTCCACAAGAGAAGAACCCAACTGGATTAATTAGAGGCAAGCAGTTATTGTTGTTTTGTATAAAAAACAATAATTGTCAAATTGGAGTCAACCTTGAAGTTCACTGACATATGAGAAAAGATGCCGTCTGAATCAAGTTTCCAAAGCAGTCCATCCTTATAAGTGCTTAGCCTTATCAGATTGAGCTTAATAGAAAAAAGGATGCACTCTTTACTTTTCAATCTCCTAGTCTCCTCCTCAAGCCTACATCCCATAGACTCCTGTTTCTGTAGATTCTTAATTtCGGTTTTTGGAACATCAGTATCTTGTGAGAAATAGGAGTGTCTATCATCCAACCATCTTTCACAAATGTAATTGTCTCTCATGCCAACTTTGTCTACAATTAAATTACAAATTATCAATGGACCTTGGGTTTTGACAACTCCGTGGCTAACAATCAACTCCATGATCACGACCTTCTACATTTGTGAGCCATCGGATGGGATAAGAACAGCATTTACTCCATAAAACTTCTACACCAGTGCCACTGTATTATTAAGGTTAAATTGCATACATCTAGACTAATCTCCTATTAAAATGGACTGAATACACCAAGAAGGTTGCGCAAACAGACACTTGGTTACAACATCATAATATTTTTTACTTGTAGTGCTTTCTCATCTGAACTCATAAGTTTCCTCTTTATCTGTTTGTTTGGGGATAAAATGATTGGCAATTTATCTTGCTTCCACAAAAATGAAAGAAAATGGTTTCTGCTCTTTGTTTCCTTTTATTTTCTAGACATATAACAGTAGCTTTTCCGACCACAAATTTCAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCCTATCTTAATCGATTGGGCACATTGCTGATCAATAACAATAGAATCACTCGTATCAATCCAAATATTGGAGGTGAGCTTTCCATTATGCCTTCATAGTATTATATAGGCACTGTATGGTAACCATTTTGGTTTCGTGTTCTCTTTCAAAATATTATATTTTTTACTCTGAAAATTTTGTTTTGGTGAGTTTTCCACCTTTCATGAGAACACATTTGAAGTCTAAATCAAAATTCAAAAACAAAATCAAGATTTTAAAAATTACTCATTTTACTTCTCAAAATTTTtCTTGGCGTTTTCAAAACGATATTTAAGTGCAGGTGATGAATCAAGGAAATTATATGTGAAAGTATTGTTTACAAGCTTAATTTTCAAAAATAAAAAACCAAAAAACAAAATGGTTATTTGATGGGCTTTAGCAGTATTATTTTTGAAATTATGTTCTTAAAAAATCAATTGTCTTTGTTCATTTCAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCATCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACAAAGAAGCCAAATTATAGATTGTATGTCATCCACAAGTTGAAGTCAGTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGTAACTTTTTCCTGCATTTGGACCTTACTATTTAAGGAATGGCTTTAATTCTATACTTGTTTCTGCATTTTACATCGACAATCCAGAAACGTTTAGAAGAGAATTTCAGGTTTGATTCAAATTTTTTATCCGATGGGGTATTTTGAAAATGTTCTAACTTTTAGTATTTGTAAGTACGTAGACCTTGAGTTTTTTTTtATTGTATTTAATATGATATTTGACTCTAAGTTGTGTTTTGATTGTGCTAGTTTCTAACAAATCTTAAACTTCTTGCTATTTTTAGAAGTATTATGCAATCCATGTTCTATTGTTTATTAGAGACTAGAGAGGACACGTTTCCTGCGCATGATAAATGTGCATATGCTCATATGTTAATACCTAAAGAATACAAATGCATTCAGTTTTAATGTCCACAATCATGTGCCTGAGAATTAGTTTTTTGGCTAAAGAAATAAGAAGTAAAAATACTGAAGAAGTGCCTATAAATAGAGTTGAACTTTATTCTATTATAGTAGAACATCCGTGGACAACTAGGATGTGCACGTGTAAGAGTCACTATTTTTGGACAAGTAGGGTTCCACTCTACTTCATTCAACTCCGATTCAATGTGTATGCTTGGTTTAGAGTCTAATTTTGTTCTTGAATCTAATTGGTGCATACATACAAAAATTTCTTGTTGTGTTGGACTTTGGGCACTAGATATCCAATGCCTACTGCATCTCTTCATTTCTAAATGTCAAATGACAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAGGCGAAGAAGGAATCTGTGAAGACATTCGTTCCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCACCAACACCGGAGCAAATTATAGCTATAAAGGTGTGTACGCTATGAAAAAAaCTTAAGTTCACCTGCCTTTTCTTGTCTGGAGAAAGGTCAAGCTCTAAAACTTTTAGGGTAAAATGCACTTTTGGTCCAGAGTTCAGAGTCAAATTGCTGAGAAAAAAaTTGCTGAAGTTTCAAAACAGATATTTTAATCCATGAGGTCTAGTAAATAGTTCTATATAGTCCTTGACATTTTAATTCATAATGCTTACATGTGAAAAAAAaGTGTATTTTTCCGAACCTCTTTTGTTAACTACCATTTCCTCACGGTAAAAGTATAACAAGAAATGTATTTTTAGGGATTAAAAATTCAAATGGCATCACCTAATATATGGCTTTTGTACAAGTGTTTCACCATCACATGCTTCCTACAACATCTTCTGATCAATCCATTTTTCACATTACAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGTATGCTTCGTTTTCGTGTCTTCTACAGTCCCCCTCCTCAAAAGGAAAATGCAGGAGAAAAATCTCTATTTAAATGTTATGGGAGTAATAACGTGAGAAAACTCTTCTTTGTTGGCACAGGCGCTCAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGACAATATTGCACAAAACATCACAAAAGACAAAGACGATAAGACAATGTCCGATAGCGGAGACGAAGAACATGTAACAAATGATGAATCCACACCTATGGAGCAGGTACCACAAACCTTTATGCCTCAGATCGGTTGTTTTCTTTGAGCATATTTCTTTCTTATACCTTTGACGATTTCTAGTTAACGATGTATATCATGTATGTTTTTCATTATTCTGTTTGTGGTTGTAGGAATAACAGTAGAAAACTATTGCTGTGACTACTGTGGTGGCTCATCTGTAAGTGTTCATCGGTAGCGATCCTGTCGTGCTGAGTTGTGGACATTTTTAAAAGAACCATTTGAGAAGTCTAAGCATGGCACTTCCCGGGCAGGGGATGTTAGGCGGATCTTTTGCTTCTCTTTGTAAGAGTTGGGTTCTCTTCTTCTTTTACTTTCTTTCATTTTTCCTTTTTCGGGTAAAGAATATTCTTAAAATATGTACGGAGATTTTGTTGTATTTACCACACTTTTGATGGCTTTTGAAATTTCCTTTACTTTAAAATATAATATGTAAAACGATTATTTAGCGTAGTGTGGGGTTTTGCCTCTTTTTTTtGTTCCTTTTATCTTCGAACATTGAAGTCAGAAAAAaGGAAAAGAAGAGAAAAAGTACAATTGGTTTTTTGTACATTTC

mRNA sequence

TCCACGCACCGGTCTTTTGCTGTCGTCTCTCGTCGACGCCTTCCCTTCTCTTCCTAAAGCCCTAAACCCCGTCGTCGTCgaagaagaagaagaagaagaagaTGGTGAGACTGACGGTCGATTTAATTTGGAAAAGCCCTCATTTTTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCCTATCTTAATCGATTGGGCACATTGCTGATCAATAACAATAGAATCACTCGTATCAATCCAAATATTGGAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCATCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACAAAGAAGCCAAATTATAGATTGTATGTCATCCACAAGTTGAAGTCAGTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAGGCGAAGAAGGAATCTGTGAAGACATTCGTTCCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCACCAACACCGGAGCAAATTATAGCTATAAAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGCGCTCAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGACAATATTGCACAAAACATCACAAAAGACAAAGACGATAAGACAATGTCCGATAGCGGAGACGAAGAACATGTAACAAATGATGAATCCACACCTATGGAGCAGGAATAACAGTAGAAAACTATTGCTGTGACTACTGTGGTGGCTCATCTGTAAGTGTTCATCGGTAGCGATCCTGTCGTGCTGAGTTGTGGACATTTTTAAAAGAACCATTTGAGAAGTCTAAGCATGGCACTTCCCGGGCAGGGGATGTTAGGCGGATCTTTTGCTTCTCTTTGTAAGAGTTGGGTTCTCTTCTTCTTTTACTTTCTTTCATTTTTCCTTTTTCGGGTAAAGAATATTCTTAAAATATGTACGGAGATTTTGTTGTATTTACCACACTTTTGATGGCTTTTGAAATTTCCTTTACTTTAAAATATAATATGTAAAACGATTATTTAGCGTAGTGTGGGGTTTTGCCTCTTTTTTTTGTTCCTTTTATCTTCGAACATTGAAGTCAGAAAAAAGGAAAAGAAGAGAAAAAGTACAATTGGTTTTTTGTACATTTC

Coding sequence (CDS)

ATGGTGAGACTGACGGTCGATTTAATTTGGAAAAGCCCTCATTTTTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCCTATCTTAATCGATTGGGCACATTGCTGATCAATAACAATAGAATCACTCGTATCAATCCAAATATTGGAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCATCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACAAAGAAGCCAAATTATAGATTGTATGTCATCCACAAGTTGAAGTCAGTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAGGCGAAGAAGGAATCTGTGAAGACATTCGTTCCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCACCAACACCGGAGCAAATTATAGCTATAAAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGCGCTCAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGACAATATTGCACAAAACATCACAAAAGACAAAGACGATAAGACAATGTCCGATAGCGGAGACGAAGAACATGTAACAAATGATGAATCCACACCTATGGAGCAGGAATAA

Protein sequence

MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNIAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE*

Homology

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BLAST of Cucsa.349100 vs. Swiss-Prot
Match: RU2A_ARATH (U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 SV=2)

HSP 1 Score: 370.2 bits (949), Expect = 2.1e-101
Identity = 191/239 (79.92%), Postives = 209/239 (87.45%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN 
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPN+GEFLP LH+LVLTNNRLVNLVEIDPLAS+ KLQ+LSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKK NYRLYVIHKLKS+RVLDF K++ KER EA +LFSSKE EEE KK S +   
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSRE--- 180

Query: 181 PGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 240
             EV+K S+  E  +TP V APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Sbjct: 181 --EVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGL 234

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BLAST of Cucsa.349100 vs. Swiss-Prot
Match: RU2A_HUMAN (U2 small nuclear ribonucleoprotein A' OS=Homo sapiens GN=SNRPA1 PE=1 SV=2)

HSP 1 Score: 226.5 bits (576), Expect = 3.7e-58
Identity = 128/238 (53.78%), Postives = 162/238 (68.07%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 237
           F PG    A  P ++K+      P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Sbjct: 181 FNPG----AGLPTDKKK----GGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIP 230

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BLAST of Cucsa.349100 vs. Swiss-Prot
Match: RU2A_MACFA (U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis GN=SNRPA1 PE=2 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.7e-58
Identity = 128/238 (53.78%), Postives = 162/238 (68.07%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 237
           F PG    A  P ++K+      P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Sbjct: 181 FNPG----AGLPTDKKK----GGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIP 230

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BLAST of Cucsa.349100 vs. Swiss-Prot
Match: RU2A_MOUSE (U2 small nuclear ribonucleoprotein A' OS=Mus musculus GN=Snrpa1 PE=1 SV=2)

HSP 1 Score: 223.4 bits (568), Expect = 3.1e-57
Identity = 127/238 (53.36%), Postives = 161/238 (67.65%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 180
           L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 181 FVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 237
           F PG    A  P ++K+      P+   + AIK AI N+ TL EV RL+  L+SGQ+P
Sbjct: 181 FNPG----AGLPTDKKK----GGPSAGDVEAIKNAIANASTLAEVERLKGLLQSGQIP 230

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BLAST of Cucsa.349100 vs. Swiss-Prot
Match: RU2A_CAEEL (Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans GN=mog-2 PE=1 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.7e-50
Identity = 110/238 (46.22%), Postives = 154/238 (64.71%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT +L  + P F N++  RE++LRG KI VIEN+G T DQFD IDL+DN+I KL+N 
Sbjct: 1   MVRLTTELFAERPQFVNSVNMREINLRGQKIPVIENMGVTRDQFDVIDLTDNDIRKLDNF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           P  +RL TL ++NNRI  I P+I   LPNL TL LTNN +  L +I+PLA   KL++++ 
Sbjct: 61  PTFSRLNTLYLHNNRINYIAPDIATKLPNLKTLALTNNNICELGDIEPLAECKKLEYVTF 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEE--EAKKESVKT 180
           + N IT K NYR+Y+I+KL +VRV+DF +VR  ER  A+ +F  K  ++  +A ++SV T
Sbjct: 121 IGNPITHKDNYRMYMIYKLPTVRVIDFNRVRLTEREAAKKMFKGKSGKKARDAIQKSVHT 180

Query: 181 FVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 237
             P E+E       E  +   +  T E    IK AI N+++L EV  L+  L SG++P
Sbjct: 181 EDPSEIEP-----NENSSGGGARLTDEDREKIKEAIKNAKSLSEVNYLQSILASGKVP 233

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BLAST of Cucsa.349100 vs. TrEMBL
Match: E5GB46_CUCME (U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 1.3e-147
Identity = 274/279 (98.21%), Postives = 274/279 (98.21%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNIAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE 280
           LLEDN A NITKDKDDKT S SGDEEHVTNDESTPMEQE
Sbjct: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE 279

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BLAST of Cucsa.349100 vs. TrEMBL
Match: M5XHK1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018334mg PE=4 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 7.5e-119
Identity = 226/285 (79.30%), Postives = 243/285 (85.26%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT DL+WKSPHFFNA+KERELDLRGNKIAVIENLGATEDQFD IDLSDNEIVKLEN+
Sbjct: 1   MVRLTADLVWKSPHFFNALKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENL 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTL+INNNRITRINPNIGEFLP LHTL+LTNNRLVNLVEIDPL SL KLQFLSL
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEFLPKLHTLILTNNRLVNLVEIDPLESLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKS+RVLDFKKV+NKERLEA+ LFSSKEVEEE KK S KTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVKNKERLEAQTLFSSKEVEEETKKVSAKTFV 180

Query: 181 PGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           P EV   S   EE+QTP V APTPEQI+AIKAAIVNSQTLEEVARLEQALKSGQLPADL 
Sbjct: 181 PTEVPNVSDVAEEQQTPKVVAPTPEQIMAIKAAIVNSQTLEEVARLEQALKSGQLPADLK 240

Query: 241 LLEDNIAQNITKDKDDKTMSDSGDE-------EHVTNDESTPMEQ 279
           +L+D+   N  K  DDK   +S +E       +    DE+ PMEQ
Sbjct: 241 ILDDDTETNSVKVNDDKMEVNSENEANAPKDVDEQKKDEAEPMEQ 285

[Close]

BLAST of Cucsa.349100 vs. TrEMBL
Match: A0A059ADU7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01697 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 3.7e-118
Identity = 222/287 (77.35%), Postives = 246/287 (85.71%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRL+ DLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFD IDLSDNEIVKLEN 
Sbjct: 1   MVRLSADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTL+LTNNRLVNL EIDPLASL +LQ+L L
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLILTNNRLVNLAEIDPLASLPRLQYLGL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNN+TKKPNYRLYVIHKLKS+RVLDF+KV++KERLEA  LFSSKEVEEEAKKES KTF+
Sbjct: 121 LDNNVTKKPNYRLYVIHKLKSLRVLDFRKVKSKERLEAEQLFSSKEVEEEAKKESTKTFM 180

Query: 181 PGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGEV+K S+P EE+Q P V APTPEQIIAIKAAIVNSQTLEEVARLE+ALKSGQLPADL 
Sbjct: 181 PGEVQKVSEPTEEQQAPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 240

Query: 241 LLEDNIAQNITKDKDDKTMSDSGDE--------EHVTNDESTPMEQE 280
           + E        +++D++  S + DE        E  T++E  PM+QE
Sbjct: 241 IPEVVTGAGSVEERDEEMTSTNQDEADVEQKNVEEQTDNEPAPMDQE 287

[Close]

BLAST of Cucsa.349100 vs. TrEMBL
Match: U7DXL9_POPTR (U2 small nuclear ribonucleoprotein A OS=Populus trichocarpa GN=POPTR_0381s00210g PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 3.7e-118
Identity = 225/285 (78.95%), Postives = 245/285 (85.96%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLENM
Sbjct: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTL+INNNRITRINPNIGE+LP LHTLVLTNNRLVNL EIDPL+SL KLQFLSL
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDN ITKKPNYRLYVIHKLKS+RVLDFKKV+ KER EA +LFSSKEVEEEAK+ESVKTF 
Sbjct: 121 LDNTITKKPNYRLYVIHKLKSLRVLDFKKVKAKERAEAEHLFSSKEVEEEAKRESVKTFT 180

Query: 181 PGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGE+    +  EE+Q P V APTPEQIIAIKAAIVNSQTLEEVARLE+AL SGQLPADL 
Sbjct: 181 PGEIPNIPEVAEEQQAPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALNSGQLPADLK 240

Query: 241 LLEDNIAQNITKDKDDKTMSDSGDE------EHVTNDESTPMEQE 280
           +L+D    N  K++DDK  +DS +E      E   ++E+TPMEQE
Sbjct: 241 ILDDT-GSNSVKEQDDKMATDSQNEAEPNNLEEQKDNEATPMEQE 284

[Close]

BLAST of Cucsa.349100 vs. TrEMBL
Match: D7TFN0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0150g00590 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 1.1e-117
Identity = 221/287 (77.00%), Postives = 246/287 (85.71%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT DLIWKSPHFFNAI+ERELDLRGNK+AVIENLGATEDQFD IDLSDNEIVKLEN+
Sbjct: 1   MVRLTADLIWKSPHFFNAIRERELDLRGNKVAVIENLGATEDQFDTIDLSDNEIVKLENL 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGE+LP LHTLVLTNNRLVNL EIDPL+S  KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSFPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIH+LKS+R+LDFKKV+NKERLEA NLF+SKEVEEEAK+E +KTF 
Sbjct: 121 LDNNITKKPNYRLYVIHRLKSLRLLDFKKVKNKERLEAENLFASKEVEEEAKQEPLKTFT 180

Query: 181 PGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGE+  A +P EE+Q P V  P+PE++IAIKAAIVNSQTLEEVARLE+ALKSGQLPADL 
Sbjct: 181 PGEMPNALEPAEEQQIPKVVGPSPEELIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 240

Query: 241 LLEDNIAQNITKDKDDKTMSD----SGDE----EHVTNDESTPMEQE 280
            L +N   ++  +KDDK +S     S DE    E   ND+  PMEQE
Sbjct: 241 SLVENTRADVVNEKDDKMVSSNPNTSRDEPKTVEEQKNDDVAPMEQE 287

[Close]

BLAST of Cucsa.349100 vs. TAIR10
Match: AT1G09760.1 (AT1G09760.1 U2 small nuclear ribonucleoprotein A)

HSP 1 Score: 370.2 bits (949), Expect = 1.2e-102
Identity = 191/239 (79.92%), Postives = 209/239 (87.45%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN 
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPN+GEFLP LH+LVLTNNRLVNLVEIDPLAS+ KLQ+LSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKK NYRLYVIHKLKS+RVLDF K++ KER EA +LFSSKE EEE KK S +   
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSRE--- 180

Query: 181 PGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 240
             EV+K S+  E  +TP V APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Sbjct: 181 --EVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGL 234

[Close]

BLAST of Cucsa.349100 vs. NCBI nr
Match: gi|778711690|ref|XP_004140564.2| (PREDICTED: U2 small nuclear ribonucleoprotein A', partial [Cucumis sativus])

HSP 1 Score: 538.9 bits (1387), Expect = 5.3e-150
Identity = 277/278 (99.64%), Postives = 277/278 (99.64%), Query Frame = 1


Query: 2   VRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMP 61
           VRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMP
Sbjct: 13  VRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMP 72

Query: 62  YLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSLL 121
           YLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSLL
Sbjct: 73  YLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSLL 132

Query: 122 DNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVP 181
           DNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVP
Sbjct: 133 DNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVP 192

Query: 182 GEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNL 241
           GEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNL
Sbjct: 193 GEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNL 252

Query: 242 LEDNIAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE 280
           LEDN AQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE
Sbjct: 253 LEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE 290

[Close]

BLAST of Cucsa.349100 vs. NCBI nr
Match: gi|659119954|ref|XP_008459932.1| (PREDICTED: U2 small nuclear ribonucleoprotein A' [Cucumis melo])

HSP 1 Score: 530.4 bits (1365), Expect = 1.9e-147
Identity = 274/279 (98.21%), Postives = 274/279 (98.21%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
            GEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN
Sbjct: 181 SGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 241 LLEDNIAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE 280
           LLEDN A NITKDKDDKT S SGDEEHVTNDESTPMEQE
Sbjct: 241 LLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE 279

[Close]

BLAST of Cucsa.349100 vs. NCBI nr
Match: gi|645231236|ref|XP_008222301.1| (PREDICTED: U2 small nuclear ribonucleoprotein A' [Prunus mume])

HSP 1 Score: 438.7 bits (1127), Expect = 7.5e-120
Identity = 229/286 (80.07%), Postives = 245/286 (85.66%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT DL+WKSPHFFNA+KERELDLRGNKIAVIENLGATEDQFD IDLSDNEIVKLEN+
Sbjct: 1   MVRLTADLVWKSPHFFNALKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENL 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTL+INNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLSL
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKS+RVLDFKKV+NKERLEA+ LFSSKEVEEE KK S KTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVKNKERLEAQTLFSSKEVEEETKKVSAKTFV 180

Query: 181 PGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           P EV   S   EE+QTP V APTPEQI+AIKAAIVNSQTLEEVARLEQALKSGQLPADL 
Sbjct: 181 PTEVPNVSDVAEEQQTPKVVAPTPEQIMAIKAAIVNSQTLEEVARLEQALKSGQLPADLK 240

Query: 241 LLEDNIAQNITKDKDDKTMSDSGDE-------EHVTNDESTPMEQE 280
           +L+D+   N  K  DDK   +S +E       +    DE+ PMEQE
Sbjct: 241 ILDDDTETNSVKVNDDKMDVNSENEANAPKDVDEQKKDEAEPMEQE 286

[Close]

BLAST of Cucsa.349100 vs. NCBI nr
Match: gi|596228279|ref|XP_007224240.1| (hypothetical protein PRUPE_ppa018334mg, partial [Prunus persica])

HSP 1 Score: 434.9 bits (1117), Expect = 1.1e-118
Identity = 226/285 (79.30%), Postives = 243/285 (85.26%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT DL+WKSPHFFNA+KERELDLRGNKIAVIENLGATEDQFD IDLSDNEIVKLEN+
Sbjct: 1   MVRLTADLVWKSPHFFNALKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENL 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTL+INNNRITRINPNIGEFLP LHTL+LTNNRLVNLVEIDPL SL KLQFLSL
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEFLPKLHTLILTNNRLVNLVEIDPLESLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDNNITKKPNYRLYVIHKLKS+RVLDFKKV+NKERLEA+ LFSSKEVEEE KK S KTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVKNKERLEAQTLFSSKEVEEETKKVSAKTFV 180

Query: 181 PGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           P EV   S   EE+QTP V APTPEQI+AIKAAIVNSQTLEEVARLEQALKSGQLPADL 
Sbjct: 181 PTEVPNVSDVAEEQQTPKVVAPTPEQIMAIKAAIVNSQTLEEVARLEQALKSGQLPADLK 240

Query: 241 LLEDNIAQNITKDKDDKTMSDSGDE-------EHVTNDESTPMEQ 279
           +L+D+   N  K  DDK   +S +E       +    DE+ PMEQ
Sbjct: 241 ILDDDTETNSVKVNDDKMEVNSENEANAPKDVDEQKKDEAEPMEQ 285

[Close]

BLAST of Cucsa.349100 vs. NCBI nr
Match: gi|566256109|ref|XP_006388045.1| (U2 small nuclear ribonucleoprotein A' [Populus trichocarpa])

HSP 1 Score: 432.6 bits (1111), Expect = 5.4e-118
Identity = 225/285 (78.95%), Postives = 245/285 (85.96%), Query Frame = 1


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60
           MVRLT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLENM
Sbjct: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60

Query: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120
           PYLNRLGTL+INNNRITRINPNIGE+LP LHTLVLTNNRLVNL EIDPL+SL KLQFLSL
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSLPKLQFLSL 120

Query: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180
           LDN ITKKPNYRLYVIHKLKS+RVLDFKKV+ KER EA +LFSSKEVEEEAK+ESVKTF 
Sbjct: 121 LDNTITKKPNYRLYVIHKLKSLRVLDFKKVKAKERAEAEHLFSSKEVEEEAKRESVKTFT 180

Query: 181 PGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240
           PGE+    +  EE+Q P V APTPEQIIAIKAAIVNSQTLEEVARLE+AL SGQLPADL 
Sbjct: 181 PGEIPNIPEVAEEQQAPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALNSGQLPADLK 240

Query: 241 LLEDNIAQNITKDKDDKTMSDSGDE------EHVTNDESTPMEQE 280
           +L+D    N  K++DDK  +DS +E      E   ++E+TPMEQE
Sbjct: 241 ILDDT-GSNSVKEQDDKMATDSQNEAEPNNLEEQKDNEATPMEQE 284

The following BLAST results are available for this feature:

BLAST of Cucsa.349100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RU2A_ARATH	2.1e-101	79.92	U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 ...	[more]
RU2A_HUMAN	3.7e-58	53.78	U2 small nuclear ribonucleoprotein A' OS=Homo sapiens GN=SNRPA1 PE=1 SV=2	[more]
RU2A_MACFA	3.7e-58	53.78	U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis GN=SNRPA1 PE=2 SV=1	[more]
RU2A_MOUSE	3.1e-57	53.36	U2 small nuclear ribonucleoprotein A' OS=Mus musculus GN=Snrpa1 PE=1 SV=2	[more]
RU2A_CAEEL	3.7e-50	46.22	Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans GN=mog-...	[more]

BLAST of Cucsa.349100 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB46_CUCME	1.3e-147	98.21	U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
M5XHK1_PRUPE	7.5e-119	79.30	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018334mg PE=4 S...	[more]
A0A059ADU7_EUCGR	3.7e-118	77.35	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01697 PE=4 SV=1	[more]
U7DXL9_POPTR	3.7e-118	78.95	U2 small nuclear ribonucleoprotein A OS=Populus trichocarpa GN=POPTR_0381s00210g...	[more]
D7TFN0_VITVI	1.1e-117	77.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0150g00590 PE=4 SV=...	[more]

BLAST of Cucsa.349100 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09760.1	1.2e-102	79.92	U2 small nuclear ribonucleoprotein A	[more]

BLAST of Cucsa.349100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778711690\|ref\|XP_004140564.2\|	5.3e-150	99.64	PREDICTED: U2 small nuclear ribonucleoprotein A', partial [Cucumis sativus]	[more]
gi\|659119954\|ref\|XP_008459932.1\|	1.9e-147	98.21	PREDICTED: U2 small nuclear ribonucleoprotein A' [Cucumis melo]	[more]
gi\|645231236\|ref\|XP_008222301.1\|	7.5e-120	80.07	PREDICTED: U2 small nuclear ribonucleoprotein A' [Prunus mume]	[more]
gi\|596228279\|ref\|XP_007224240.1\|	1.1e-118	79.30	hypothetical protein PRUPE_ppa018334mg, partial [Prunus persica]	[more]
gi\|566256109\|ref\|XP_006388045.1\|	5.4e-118	78.95	U2 small nuclear ribonucleoprotein A' [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001611	Leu-rich_rpt
IPR003603	U2A'_phosphoprotein32A_C
IPR001611	Leu-rich_rpt
IPR003603	U2A'_phosphoprotein32A_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0001510	RNA methylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0015030	Cajal body
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.349100.1	Cucsa.349100.1	mRNA
Cucsa.349100.2	Cucsa.349100.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001611	Leucine-rich repeat	PROFILE	PS51450	LRR	coord: 55..76 score: 6.588coord: 30..51 score: 7.288coord: 6..27 score: 5
IPR003603	U2A'/phosphoprotein 32 family A, C-terminal	SMART	SM00446	LRRcap_2	coord: 69..87 score: 0.
None	No IPR available	PANTHER	PTHR10552	U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 2..206 score: 2.4
None	No IPR available	PFAM	PF14580	LRR_9	coord: 1..114 score: 3.3
None	No IPR available	unknown	SSF52075	Outer arm dynein light chain 1	coord: 3..108 score: 1.44

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.349100	Csa6G089220	Cucumber (Chinese Long) v2	cgycuB490
Cucsa.349100	MELO3C022370	Melon (DHL92) v3.5.1	cgymeB564
Cucsa.349100	CSPI06G07220	Wild cucumber (PI 183967)	cgycpiB517
Cucsa.349100	CmaCh08G000310	Cucurbita maxima (Rimu)	cgycmaB0955
Cucsa.349100	CmoCh08G000340	Cucurbita moschata (Rifu)	cgycmoB0955
Cucsa.349100	Lsi09G017790	Bottle gourd (USVL1VR-Ls)	cgylsiB562
Cucsa.349100	Cp4.1LG17g09550	Cucurbita pepo (Zucchini)	cgycpeB0911
Cucsa.349100	MELO3C022370.2	Melon (DHL92) v3.6.1	cgymedB565
Cucsa.349100	CsaV3_6G007610	Cucumber (Chinese Long) v3	cgycucB532
Cucsa.349100	Cla97C06G110920	Watermelon (97103) v2	cgywmbB596
Cucsa.349100	Bhi12G002109	Wax gourd	cgywgoB696
Cucsa.349100	Carg03798	Silver-seed gourd	carcgyB1099

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.349100	Silver-seed gourd	carcgyB0012
Cucsa.349100	Cucurbita maxima (Rimu)	cgycmaB0951
Cucsa.349100	Cucurbita moschata (Rifu)	cgycmoB0951
Cucsa.349100	Watermelon (Charleston Gray)	cgywcgB595
Cucsa.349100	Watermelon (97103) v1	cgywmB626
Cucsa.349100	Cucurbita pepo (Zucchini)	cgycpeB0907