Cucsa.349100.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.349100.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	U2 small nuclear ribonucleoprotein a
Location	scaffold03487 : 429768 .. 434665 (+)
Sequence length	1466

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCACGCACCGGTCTTTTGCTGTCGTCTCTCGTCGACGCCTTCCCTTCTCTTCCTAAAGCCCTAAACCCCGTCGTCGTCGAAGAAGAAGAAGAAGAAGAAGATGGTGAGACTGACGGTCGATTTAATTTGGAAAAGCCCTCATTTTTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTTCTCTAACTTTTCTCAACTCTTCCTTCTTTCACACTCTCCATCACGCATTTCCTTCTTAACTCTTTTCTTCTTCTTCTTCTCTCAGGTAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGTGAGTCATTCCCACTGCCTCCTTATTATCTCTTTCTTTTAAATTTCTGGAACTCGAACATAGATTTAAATTATATTTACATGCTGGCGAGAATCGTTCTGCAAATTCAACTTCACTTCAAATTAGTAATAACAGTTCTCAATTTCTCTATACCATTACGAAGTTTGTTTGAAGTTTCGTTTTCCTTGAAGACAGCCTAATAAACTCTAATTTGAGGCCATATGCTTTGCATTTTCCCTTGAGTCATAAGAGTTTTAAATTTTATCATATTGAGGATTCAATTGTCGCTTTTAACCACAAGGATCAGATTTGAGTACTAATAGTTTTTTtCCCATAGAATTATGGCTGGTTACCACCTACCCGAGAGGACTTTTGAAAAGTAATGTTCCGTATCCTTTTTGTAAGGCAGAAGTTGGGGTCAAGATTTCTTTAGAGAGAACCCAGCTCACAGTGAATGAAGAGGTGGTTGTGGTTCATAGTTTTCACATCTTTTCTGCATATGATTGATAGATATGAGATGTTAGGCTATATAGAAAGTGATGACCTCCTTTGCCTTCTGTCTTGAGATTAACACTTATGTAGGCCGTAAATATAAAACCTGTTAGGGAGCTTACTGGTGTAAACCAATCAGTATTTTTTtCTTGAATCAAAATTGTGCCCTTTTACCAAGAGGACTACTATTTATACTAGTCTTTCTCTTAACCAGAAATAGCAAGCTTAACTAACTACTCTAACAGCTAACAACCAACTTTCCCAACATCCATATCAACTGAAAATTTACCCACATCACTCACGTTCCAAAATAAGCTCCACAAGAGAAGAACCCAACTGGATTAATTAGAGGCAAGCAGTTATTGTTGTTTTGTATAAAAAACAATAATTGTCAAATTGGAGTCAACCTTGAAGTTCACTGACATATGAGAAAAGATGCCGTCTGAATCAAGTTTCCAAAGCAGTCCATCCTTATAAGTGCTTAGCCTTATCAGATTGAGCTTAATAGAAAAAAGGATGCACTCTTTACTTTTCAATCTCCTAGTCTCCTCCTCAAGCCTACATCCCATAGACTCCTGTTTCTGTAGATTCTTAATTtCGGTTTTTGGAACATCAGTATCTTGTGAGAAATAGGAGTGTCTATCATCCAACCATCTTTCACAAATGTAATTGTCTCTCATGCCAACTTTGTCTACAATTAAATTACAAATTATCAATGGACCTTGGGTTTTGACAACTCCGTGGCTAACAATCAACTCCATGATCACGACCTTCTACATTTGTGAGCCATCGGATGGGATAAGAACAGCATTTACTCCATAAAACTTCTACACCAGTGCCACTGTATTATTAAGGTTAAATTGCATACATCTAGACTAATCTCCTATTAAAATGGACTGAATACACCAAGAAGGTTGCGCAAACAGACACTTGGTTACAACATCATAATATTTTTTACTTGTAGTGCTTTCTCATCTGAACTCATAAGTTTCCTCTTTATCTGTTTGTTTGGGGATAAAATGATTGGCAATTTATCTTGCTTCCACAAAAATGAAAGAAAATGGTTTCTGCTCTTTGTTTCCTTTTATTTTCTAGACATATAACAGTAGCTTTTCCGACCACAAATTTCAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCCTATCTTAATCGATTGGGCACATTGCTGATCAATAACAATAGAATCACTCGTATCAATCCAAATATTGGAGGTGAGCTTTCCATTATGCCTTCATAGTATTATATAGGCACTGTATGGTAACCATTTTGGTTTCGTGTTCTCTTTCAAAATATTATATTTTTTACTCTGAAAATTTTGTTTTGGTGAGTTTTCCACCTTTCATGAGAACACATTTGAAGTCTAAATCAAAATTCAAAAACAAAATCAAGATTTTAAAAATTACTCATTTTACTTCTCAAAATTTTtCTTGGCGTTTTCAAAACGATATTTAAGTGCAGGTGATGAATCAAGGAAATTATATGTGAAAGTATTGTTTACAAGCTTAATTTTCAAAAATAAAAAACCAAAAAACAAAATGGTTATTTGATGGGCTTTAGCAGTATTATTTTTGAAATTATGTTCTTAAAAAATCAATTGTCTTTGTTCATTTCAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCATCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACAAAGAAGCCAAATTATAGATTGTATGTCATCCACAAGTTGAAGTCAGTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGTAACTTTTTCCTGCATTTGGACCTTACTATTTAAGGAATGGCTTTAATTCTATACTTGTTTCTGCATTTTACATCGACAATCCAGAAACGTTTAGAAGAGAATTTCAGGTTTGATTCAAATTTTTTATCCGATGGGGTATTTTGAAAATGTTCTAACTTTTAGTATTTGTAAGTACGTAGACCTTGAGTTTTTTTTtATTGTATTTAATATGATATTTGACTCTAAGTTGTGTTTTGATTGTGCTAGTTTCTAACAAATCTTAAACTTCTTGCTATTTTTAGAAGTATTATGCAATCCATGTTCTATTGTTTATTAGAGACTAGAGAGGACACGTTTCCTGCGCATGATAAATGTGCATATGCTCATATGTTAATACCTAAAGAATACAAATGCATTCAGTTTTAATGTCCACAATCATGTGCCTGAGAATTAGTTTTTTGGCTAAAGAAATAAGAAGTAAAAATACTGAAGAAGTGCCTATAAATAGAGTTGAACTTTATTCTATTATAGTAGAACATCCGTGGACAACTAGGATGTGCACGTGTAAGAGTCACTATTTTTGGACAAGTAGGGTTCCACTCTACTTCATTCAACTCCGATTCAATGTGTATGCTTGGTTTAGAGTCTAATTTTGTTCTTGAATCTAATTGGTGCATACATACAAAAATTTCTTGTTGTGTTGGACTTTGGGCACTAGATATCCAATGCCTACTGCATCTCTTCATTTCTAAATGTCAAATGACAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAGGCGAAGAAGGAATCTGTGAAGACATTCGTTCCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCACCAACACCGGAGCAAATTATAGCTATAAAGGTGTGTACGCTATGAAAAAAaCTTAAGTTCACCTGCCTTTTCTTGTCTGGAGAAAGGTCAAGCTCTAAAACTTTTAGGGTAAAATGCACTTTTGGTCCAGAGTTCAGAGTCAAATTGCTGAGAAAAAAaTTGCTGAAGTTTCAAAACAGATATTTTAATCCATGAGGTCTAGTAAATAGTTCTATATAGTCCTTGACATTTTAATTCATAATGCTTACATGTGAAAAAAAaGTGTATTTTTCCGAACCTCTTTTGTTAACTACCATTTCCTCACGGTAAAAGTATAACAAGAAATGTATTTTTAGGGATTAAAAATTCAAATGGCATCACCTAATATATGGCTTTTGTACAAGTGTTTCACCATCACATGCTTCCTACAACATCTTCTGATCAATCCATTTTTCACATTACAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGTATGCTTCGTTTTCGTGTCTTCTACAGTCCCCCTCCTCAAAAGGAAAATGCAGGAGAAAAATCTCTATTTAAATGTTATGGGAGTAATAACGTGAGAAAACTCTTCTTTGTTGGCACAGGCGCTCAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGACAATATTGCACAAAACATCACAAAAGACAAAGACGATAAGACAATGTCCGATAGCGGAGACGAAGAACATGTAACAAATGATGAATCCACACCTATGGAGCAGGTACCACAAACCTTTATGCCTCAGATCGGTTGTTTTCTTTGAGCATATTTCTTTCTTATACCTTTGACGATTTCTAGTTAACGATGTATATCATGTATGTTTTTCATTATTCTGTTTGTGGTTGTAGGAATAACAGTAGAAAACTATTGCTGTGACTACTGTGGTGGCTCATCTGTAAGTGTTCATCGGTAGCGATCCTGTCGTGCTGAGTTGTGGACATTTTTAAAAGAACCATTTGAGAAGTCTAAGCATGGCACTTCCCGGGCAGGGGATGTTAGGCGGATCTTTTGCTTCTCTTTGTAAGAGTTGGGTTCTCTTCTTCTTTTACTTTCTTTCATTTTTCCTTTTTCGGGTAAAGAATATTCTTAAAATATGTACGGAGATTTTGTTGTATTTACCACACTTTTGATGGCTTTTGAAATTTCCTTTACTTTAAAATATAATATGTAAAACGATTATTTAGCGTAGTGTGGGGTTTTGCCTCTTTTTTTtGTTCCTTTTATCTTCGAACATTGAAGTCAGAAAAAaGGAAAAGAAGAGAAAAAGTACAATTGGTTTTTTGTACATTTC

mRNA sequence

TCCACGCACCGGTCTTTTGCTGTCGTCTCTCGTCGACGCCTTCCCTTCTCTTCCTAAAGCCCTAAACCCCGTCGTCGTCgaagaagaagaagaagaagaagaTGGTGAGACTGACGGTCGATTTAATTTGGAAAAGCCCTCATTTTTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTTCTCTAACTTTTCTCAACTCTTCCTTCTTTCACACTCTCCATCACGCATTTCCTTCTTAACTCTTTTCTTCTTCTTCTTCTCTCAGGTAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCCTATCTTAATCGATTGGGCACATTGCTGATCAATAACAATAGAATCACTCGTATCAATCCAAATATTGGAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCATCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACAAAGAAGCCAAATTATAGATTGTATGTCATCCACAAGTTGAAGTCAGTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAGGCGAAGAAGGAATCTGTGAAGACATTCGTTCCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCACCAACACCGGAGCAAATTATAGCTATAAAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGCGCTCAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGACAATATTGCACAAAACATCACAAAAGACAAAGACGATAAGACAATGTCCGATAGCGGAGACGAAGAACATGTAACAAATGATGAATCCACACCTATGGAGCAGGAATAACAGTAGAAAACTATTGCTGTGACTACTGTGGTGGCTCATCTGTAAGTGTTCATCGGTAGCGATCCTGTCGTGCTGAGTTGTGGACATTTTTAAAAGAACCATTTGAGAAGTCTAAGCATGGCACTTCCCGGGCAGGGGATGTTAGGCGGATCTTTTGCTTCTCTTTGTAAGAGTTGGGTTCTCTTCTTCTTTTACTTTCTTTCATTTTTCCTTTTTCGGGTAAAGAATATTCTTAAAATATGTACGGAGATTTTGTTGTATTTACCACACTTTTGATGGCTTTTGAAATTTCCTTTACTTTAAAATATAATATGTAAAACGATTATTTAGCGTAGTGTGGGGTTTTGCCTCTTTTTTTTGTTCCTTTTATCTTCGAACATTGAAGTCAGAAAAAAGGAAAAGAAGAGAAAAAGTACAATTGGTTTTTTGTACATTTC

Coding sequence (CDS)

ATGCCCTATCTTAATCGATTGGGCACATTGCTGATCAATAACAATAGAATCACTCGTATCAATCCAAATATTGGAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCATCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACAAAGAAGCCAAATTATAGATTGTATGTCATCCACAAGTTGAAGTCAGTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAGGCGAAGAAGGAATCTGTGAAGACATTCGTTCCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCACCAACACCGGAGCAAATTATAGCTATAAAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGCGCTCAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGACAATATTGCACAAAACATCACAAAAGACAAAGACGATAAGACAATGTCCGATAGCGGAGACGAAGAACATGTAACAAATGATGAATCCACACCTATGGAGCAGGAATAA

Protein sequence

MPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNIAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE*

Homology

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BLAST of Cucsa.349100.2 vs. Swiss-Prot
Match: RU2A_ARATH (U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 SV=2)

HSP 1 Score: 261.2 bits (666), Expect = 1.1e-68
Identity = 136/179 (75.98%), Postives = 153/179 (85.47%), Query Frame = 1


Query: 2   PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 61
           PYLNRLGTLLINNNRITRINPN+GEFLP LH+LVLTNNRLVNLVEIDPLAS+ KLQ+LSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 62  LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 121
           LDNNITKK NYRLYVIHKLKS+RVLDF K++ KER EA +LFSSKE EEE KK S +   
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSRE--- 180

Query: 122 PGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 181
             EV+K S+  E  +TP V APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Sbjct: 181 --EVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGL 234

[Close]

BLAST of Cucsa.349100.2 vs. Swiss-Prot
Match: RU2A_HUMAN (U2 small nuclear ribonucleoprotein A' OS=Homo sapiens GN=SNRPA1 PE=1 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 5.3e-36
Identity = 89/178 (50.00%), Postives = 114/178 (64.04%), Query Frame = 1


Query: 2   PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 61
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 62  LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 121
           L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 122 FVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 178
           F PG    A  P ++K+      P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Sbjct: 181 FNPG----AGLPTDKKK----GGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIP 230

[Close]

BLAST of Cucsa.349100.2 vs. Swiss-Prot
Match: RU2A_MACFA (U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis GN=SNRPA1 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.3e-36
Identity = 89/178 (50.00%), Postives = 114/178 (64.04%), Query Frame = 1


Query: 2   PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 61
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 62  LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 121
           L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 122 FVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 178
           F PG    A  P ++K+      P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Sbjct: 181 FNPG----AGLPTDKKK----GGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIP 230

[Close]

BLAST of Cucsa.349100.2 vs. Swiss-Prot
Match: RU2A_MOUSE (U2 small nuclear ribonucleoprotein A' OS=Mus musculus GN=Snrpa1 PE=1 SV=2)

HSP 1 Score: 149.4 bits (376), Expect = 4.5e-35
Identity = 88/178 (49.44%), Postives = 113/178 (63.48%), Query Frame = 1


Query: 2   PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 61
           P L RL TLL+NNNRI RI   + + LP L  L+LTNN LV L ++DPLASL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 62  LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKT 121
           L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 122 FVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 178
           F PG    A  P ++K+      P+   + AIK AI N+ TL EV RL+  L+SGQ+P
Sbjct: 181 FNPG----AGLPTDKKK----GGPSAGDVEAIKNAIANASTLAEVERLKGLLQSGQIP 230

[Close]

BLAST of Cucsa.349100.2 vs. Swiss-Prot
Match: RU2A_CAEEL (Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans GN=mog-2 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.3e-29
Identity = 75/178 (42.13%), Postives = 109/178 (61.24%), Query Frame = 1


Query: 2   PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 61
           P  +RL TL ++NNRI  I P+I   LPNL TL LTNN +  L +I+PLA   KL++++ 
Sbjct: 61  PTFSRLNTLYLHNNRINYIAPDIATKLPNLKTLALTNNNICELGDIEPLAECKKLEYVTF 120

Query: 62  LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEE--EAKKESVKT 121
           + N IT K NYR+Y+I+KL +VRV+DF +VR  ER  A+ +F  K  ++  +A ++SV T
Sbjct: 121 IGNPITHKDNYRMYMIYKLPTVRVIDFNRVRLTEREAAKKMFKGKSGKKARDAIQKSVHT 180

Query: 122 FVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP 178
             P E+E       E  +   +  T E    IK AI N+++L EV  L+  L SG++P
Sbjct: 181 EDPSEIEP-----NENSSGGGARLTDEDREKIKEAIKNAKSLSEVNYLQSILASGKVP 233

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BLAST of Cucsa.349100.2 vs. TrEMBL
Match: A0A0A0K9F1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G089220 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 3.6e-116
Identity = 219/220 (99.55%), Postives = 219/220 (99.55%), Query Frame = 1


Query: 1   MPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLS 60
           MPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLS
Sbjct: 1   MPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLS 60

Query: 61  LLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF 120
           LLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF
Sbjct: 61  LLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF 120

Query: 121 VPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 180
           VPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
Sbjct: 121 VPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 180

Query: 181 NLLEDNIAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE 221
           NLLEDN AQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE
Sbjct: 181 NLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE 220

[Close]

BLAST of Cucsa.349100.2 vs. TrEMBL
Match: E5GB46_CUCME (U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 4.9e-113
Identity = 215/220 (97.73%), Postives = 215/220 (97.73%), Query Frame = 1


Query: 1   MPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLS 60
           MPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLS
Sbjct: 60  MPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLS 119

Query: 61  LLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF 120
           LLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF
Sbjct: 120 LLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF 179

Query: 121 VPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 180
           V GEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
Sbjct: 180 VSGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 239

Query: 181 NLLEDNIAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE 221
           NLLEDN A NITKDKDDKT S SGDEEHVTNDESTPMEQE
Sbjct: 240 NLLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE 279

[Close]

BLAST of Cucsa.349100.2 vs. TrEMBL
Match: M5XHK1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018334mg PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.5e-85
Identity = 171/226 (75.66%), Postives = 186/226 (82.30%), Query Frame = 1


Query: 1   MPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLS 60
           +PYLNRLGTL+INNNRITRINPNIGEFLP LHTL+LTNNRLVNLVEIDPL SL KLQFLS
Sbjct: 60  LPYLNRLGTLIINNNRITRINPNIGEFLPKLHTLILTNNRLVNLVEIDPLESLPKLQFLS 119

Query: 61  LLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF 120
           LLDNNITKKPNYRLYVIHKLKS+RVLDFKKV+NKERLEA+ LFSSKEVEEE KK S KTF
Sbjct: 120 LLDNNITKKPNYRLYVIHKLKSLRVLDFKKVKNKERLEAQTLFSSKEVEEETKKVSAKTF 179

Query: 121 VPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 180
           VP EV   S   EE+QTP V APTPEQI+AIKAAIVNSQTLEEVARLEQALKSGQLPADL
Sbjct: 180 VPTEVPNVSDVAEEQQTPKVVAPTPEQIMAIKAAIVNSQTLEEVARLEQALKSGQLPADL 239

Query: 181 NLLEDNIAQNITKDKDDKTMSDSGDE-------EHVTNDESTPMEQ 220
            +L+D+   N  K  DDK   +S +E       +    DE+ PMEQ
Sbjct: 240 KILDDDTETNSVKVNDDKMEVNSENEANAPKDVDEQKKDEAEPMEQ 285

[Close]

BLAST of Cucsa.349100.2 vs. TrEMBL
Match: U7DXL9_POPTR (U2 small nuclear ribonucleoprotein A OS=Populus trichocarpa GN=POPTR_0381s00210g PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 4.3e-85
Identity = 169/226 (74.78%), Postives = 189/226 (83.63%), Query Frame = 1


Query: 1   MPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLS 60
           MPYLNRLGTL+INNNRITRINPNIGE+LP LHTLVLTNNRLVNL EIDPL+SL KLQFLS
Sbjct: 60  MPYLNRLGTLIINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSLPKLQFLS 119

Query: 61  LLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF 120
           LLDN ITKKPNYRLYVIHKLKS+RVLDFKKV+ KER EA +LFSSKEVEEEAK+ESVKTF
Sbjct: 120 LLDNTITKKPNYRLYVIHKLKSLRVLDFKKVKAKERAEAEHLFSSKEVEEEAKRESVKTF 179

Query: 121 VPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 180
            PGE+    +  EE+Q P V APTPEQIIAIKAAIVNSQTLEEVARLE+AL SGQLPADL
Sbjct: 180 TPGEIPNIPEVAEEQQAPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALNSGQLPADL 239

Query: 181 NLLEDNIAQNITKDKDDKTMSDSGDE------EHVTNDESTPMEQE 221
            +L+D    N  K++DDK  +DS +E      E   ++E+TPMEQE
Sbjct: 240 KILDDT-GSNSVKEQDDKMATDSQNEAEPNNLEEQKDNEATPMEQE 284

[Close]

BLAST of Cucsa.349100.2 vs. TrEMBL
Match: A0A059ADU7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01697 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 5.6e-85
Identity = 166/227 (73.13%), Postives = 189/227 (83.26%), Query Frame = 1


Query: 2   PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 61
           PYLNRLGTLLINNNRITRINPNIGEFLP LHTL+LTNNRLVNL EIDPLASL +LQ+L L
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHTLILTNNRLVNLAEIDPLASLPRLQYLGL 120

Query: 62  LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 121
           LDNN+TKKPNYRLYVIHKLKS+RVLDF+KV++KERLEA  LFSSKEVEEEAKKES KTF+
Sbjct: 121 LDNNVTKKPNYRLYVIHKLKSLRVLDFRKVKSKERLEAEQLFSSKEVEEEAKKESTKTFM 180

Query: 122 PGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 181
           PGEV+K S+P EE+Q P V APTPEQIIAIKAAIVNSQTLEEVARLE+ALKSGQLPADL 
Sbjct: 181 PGEVQKVSEPTEEQQAPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 240

Query: 182 LLEDNIAQNITKDKDDKTMSDSGDE--------EHVTNDESTPMEQE 221
           + E        +++D++  S + DE        E  T++E  PM+QE
Sbjct: 241 IPEVVTGAGSVEERDEEMTSTNQDEADVEQKNVEEQTDNEPAPMDQE 287

[Close]

BLAST of Cucsa.349100.2 vs. TAIR10
Match: AT1G09760.1 (AT1G09760.1 U2 small nuclear ribonucleoprotein A)

HSP 1 Score: 261.2 bits (666), Expect = 6.0e-70
Identity = 136/179 (75.98%), Postives = 153/179 (85.47%), Query Frame = 1


Query: 2   PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 61
           PYLNRLGTLLINNNRITRINPN+GEFLP LH+LVLTNNRLVNLVEIDPLAS+ KLQ+LSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 62  LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 121
           LDNNITKK NYRLYVIHKLKS+RVLDF K++ KER EA +LFSSKE EEE KK S +   
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSRE--- 180

Query: 122 PGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 181
             EV+K S+  E  +TP V APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Sbjct: 181 --EVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGL 234

[Close]

BLAST of Cucsa.349100.2 vs. NCBI nr
Match: gi|778711690|ref|XP_004140564.2| (PREDICTED: U2 small nuclear ribonucleoprotein A', partial [Cucumis sativus])

HSP 1 Score: 425.6 bits (1093), Expect = 5.2e-116
Identity = 219/220 (99.55%), Postives = 219/220 (99.55%), Query Frame = 1


Query: 1   MPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLS 60
           MPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLS
Sbjct: 71  MPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLS 130

Query: 61  LLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF 120
           LLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF
Sbjct: 131 LLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF 190

Query: 121 VPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 180
           VPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
Sbjct: 191 VPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 250

Query: 181 NLLEDNIAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE 221
           NLLEDN AQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE
Sbjct: 251 NLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE 290

[Close]

BLAST of Cucsa.349100.2 vs. NCBI nr
Match: gi|700191191|gb|KGN46395.1| (hypothetical protein Csa_6G089220 [Cucumis sativus])

HSP 1 Score: 425.6 bits (1093), Expect = 5.2e-116
Identity = 219/220 (99.55%), Postives = 219/220 (99.55%), Query Frame = 1


Query: 1   MPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLS 60
           MPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLS
Sbjct: 1   MPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLS 60

Query: 61  LLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF 120
           LLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF
Sbjct: 61  LLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF 120

Query: 121 VPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 180
           VPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
Sbjct: 121 VPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 180

Query: 181 NLLEDNIAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE 221
           NLLEDN AQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE
Sbjct: 181 NLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE 220

[Close]

BLAST of Cucsa.349100.2 vs. NCBI nr
Match: gi|659119954|ref|XP_008459932.1| (PREDICTED: U2 small nuclear ribonucleoprotein A' [Cucumis melo])

HSP 1 Score: 415.2 bits (1066), Expect = 7.0e-113
Identity = 215/220 (97.73%), Postives = 215/220 (97.73%), Query Frame = 1


Query: 1   MPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLS 60
           MPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLS
Sbjct: 60  MPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLS 119

Query: 61  LLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF 120
           LLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF
Sbjct: 120 LLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF 179

Query: 121 VPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 180
           V GEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
Sbjct: 180 VSGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 239

Query: 181 NLLEDNIAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE 221
           NLLEDN A NITKDKDDKT S SGDEEHVTNDESTPMEQE
Sbjct: 240 NLLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE 279

[Close]

BLAST of Cucsa.349100.2 vs. NCBI nr
Match: gi|645231236|ref|XP_008222301.1| (PREDICTED: U2 small nuclear ribonucleoprotein A' [Prunus mume])

HSP 1 Score: 327.8 bits (839), Expect = 1.5e-86
Identity = 174/227 (76.65%), Postives = 188/227 (82.82%), Query Frame = 1


Query: 1   MPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLS 60
           +PYLNRLGTL+INNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPLASL KLQFLS
Sbjct: 60  LPYLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLS 119

Query: 61  LLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF 120
           LLDNNITKKPNYRLYVIHKLKS+RVLDFKKV+NKERLEA+ LFSSKEVEEE KK S KTF
Sbjct: 120 LLDNNITKKPNYRLYVIHKLKSLRVLDFKKVKNKERLEAQTLFSSKEVEEETKKVSAKTF 179

Query: 121 VPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 180
           VP EV   S   EE+QTP V APTPEQI+AIKAAIVNSQTLEEVARLEQALKSGQLPADL
Sbjct: 180 VPTEVPNVSDVAEEQQTPKVVAPTPEQIMAIKAAIVNSQTLEEVARLEQALKSGQLPADL 239

Query: 181 NLLEDNIAQNITKDKDDKTMSDSGDE-------EHVTNDESTPMEQE 221
            +L+D+   N  K  DDK   +S +E       +    DE+ PMEQE
Sbjct: 240 KILDDDTETNSVKVNDDKMDVNSENEANAPKDVDEQKKDEAEPMEQE 286

[Close]

BLAST of Cucsa.349100.2 vs. NCBI nr
Match: gi|596228279|ref|XP_007224240.1| (hypothetical protein PRUPE_ppa018334mg, partial [Prunus persica])

HSP 1 Score: 323.9 bits (829), Expect = 2.1e-85
Identity = 171/226 (75.66%), Postives = 186/226 (82.30%), Query Frame = 1


Query: 1   MPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLS 60
           +PYLNRLGTL+INNNRITRINPNIGEFLP LHTL+LTNNRLVNLVEIDPL SL KLQFLS
Sbjct: 60  LPYLNRLGTLIINNNRITRINPNIGEFLPKLHTLILTNNRLVNLVEIDPLESLPKLQFLS 119

Query: 61  LLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTF 120
           LLDNNITKKPNYRLYVIHKLKS+RVLDFKKV+NKERLEA+ LFSSKEVEEE KK S KTF
Sbjct: 120 LLDNNITKKPNYRLYVIHKLKSLRVLDFKKVKNKERLEAQTLFSSKEVEEETKKVSAKTF 179

Query: 121 VPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL 180
           VP EV   S   EE+QTP V APTPEQI+AIKAAIVNSQTLEEVARLEQALKSGQLPADL
Sbjct: 180 VPTEVPNVSDVAEEQQTPKVVAPTPEQIMAIKAAIVNSQTLEEVARLEQALKSGQLPADL 239

Query: 181 NLLEDNIAQNITKDKDDKTMSDSGDE-------EHVTNDESTPMEQ 220
            +L+D+   N  K  DDK   +S +E       +    DE+ PMEQ
Sbjct: 240 KILDDDTETNSVKVNDDKMEVNSENEANAPKDVDEQKKDEAEPMEQ 285

The following BLAST results are available for this feature:

BLAST of Cucsa.349100.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RU2A_ARATH	1.1e-68	75.98	U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 ...	[more]
RU2A_HUMAN	5.3e-36	50.00	U2 small nuclear ribonucleoprotein A' OS=Homo sapiens GN=SNRPA1 PE=1 SV=2	[more]
RU2A_MACFA	5.3e-36	50.00	U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis GN=SNRPA1 PE=2 SV=1	[more]
RU2A_MOUSE	4.5e-35	49.44	U2 small nuclear ribonucleoprotein A' OS=Mus musculus GN=Snrpa1 PE=1 SV=2	[more]
RU2A_CAEEL	6.3e-29	42.13	Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans GN=mog-...	[more]

BLAST of Cucsa.349100.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9F1_CUCSA	3.6e-116	99.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G089220 PE=4 SV=1	[more]
E5GB46_CUCME	4.9e-113	97.73	U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
M5XHK1_PRUPE	1.5e-85	75.66	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018334mg PE=4 S...	[more]
U7DXL9_POPTR	4.3e-85	74.78	U2 small nuclear ribonucleoprotein A OS=Populus trichocarpa GN=POPTR_0381s00210g...	[more]
A0A059ADU7_EUCGR	5.6e-85	73.13	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01697 PE=4 SV=1	[more]

BLAST of Cucsa.349100.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09760.1	6.0e-70	75.98	U2 small nuclear ribonucleoprotein A	[more]

BLAST of Cucsa.349100.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778711690\|ref\|XP_004140564.2\|	5.2e-116	99.55	PREDICTED: U2 small nuclear ribonucleoprotein A', partial [Cucumis sativus]	[more]
gi\|700191191\|gb\|KGN46395.1\|	5.2e-116	99.55	hypothetical protein Csa_6G089220 [Cucumis sativus]	[more]
gi\|659119954\|ref\|XP_008459932.1\|	7.0e-113	97.73	PREDICTED: U2 small nuclear ribonucleoprotein A' [Cucumis melo]	[more]
gi\|645231236\|ref\|XP_008222301.1\|	1.5e-86	76.65	PREDICTED: U2 small nuclear ribonucleoprotein A' [Prunus mume]	[more]
gi\|596228279\|ref\|XP_007224240.1\|	2.1e-85	75.66	hypothetical protein PRUPE_ppa018334mg, partial [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001611	Leu-rich_rpt
IPR003603	U2A'_phosphoprotein32A_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0001510	RNA methylation
cellular_component	GO:0015030	Cajal body
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0019013	viral nucleocapsid
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.349100	Cucsa.349100	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.349100.2	Cucsa.349100.2-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.349100.2.five_prime_UTR.1	Cucsa.349100.2.five_prime_UTR.1	five_prime_UTR
Cucsa.349100.2.five_prime_UTR.2	Cucsa.349100.2.five_prime_UTR.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.349100.2.CDS.1	Cucsa.349100.2.CDS.1	CDS
Cucsa.349100.2.CDS.2	Cucsa.349100.2.CDS.2	CDS
Cucsa.349100.2.CDS.3	Cucsa.349100.2.CDS.3	CDS
Cucsa.349100.2.CDS.4	Cucsa.349100.2.CDS.4	CDS
Cucsa.349100.2.CDS.5	Cucsa.349100.2.CDS.5	CDS
Cucsa.349100.2.CDS.6	Cucsa.349100.2.CDS.6	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.349100.2.three_prime_UTR.1	Cucsa.349100.2.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001611	Leucine-rich repeat	PROFILE	PS51450	LRR	coord: 55..76 score: 6.588coord: 30..51 score: 7.288coord: 6..27 score: 5
IPR003603	U2A'/phosphoprotein 32 family A, C-terminal	SMART	SM00446	LRRcap_2	coord: 69..87 score: 0.
None	No IPR available	PANTHER	PTHR10552	U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 2..206 score: 2.4
None	No IPR available	PFAM	PF14580	LRR_9	coord: 1..114 score: 3.3
None	No IPR available	unknown	SSF52075	Outer arm dynein light chain 1	coord: 3..108 score: 1.44