CsGy6G007220 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G007220
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	U2 small nuclear ribonucleoprotein A'
Location	Chr6 : 6168755 .. 6173116 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGACTGACGGTCGATTTAATTTGGAAAAGCCCTCATTTTTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTTCTCTAACTTTTCTCAACTCTTCCTTCTTTCACACTCTCCATCACGCATTTCCTTCTTAACTCTTTTCTTCTTCTTCTTCTCTCAGGTAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGTGAGTCATTCCCACTGCCTCCTTATTATCTCTTTCTTTTAAATTTCTGGAACTCGAACATAGATTTAAATTATATTTACATGCTGGCGAGAATCGTTCTGCAAATTCAACTTCACTTCAAATTAGTAATAACAGTTCTCAATTTCTCTATACCATTACGAAGTTTGTTTGAAGTTTCGTTTTCCTTGAAGACAGCCTAATAAACTCTAATTTGAGGCCATATGCTTTGCATTTTCCCTTGAGTCATAAGAGTTTTAAATTTTATCATATTGAGGATTCAATTGTCGCTTTTAACCACAAGGATCAGATTTGAGTACTAATAGTTTTTTTCCCATAGAATTATGGCTGGTTACCACCTACCCGAGAGGACTTTTGAAAAGTAATGTTCCGTATCCTTTTTGTAAGGCAGAAGTTGGGGTCAAGATTTCTTTAGAGAGAACCCAGCTCACAGTGAATGAAGAGGTGGTTGTGGTTCATAGTTTTCACATCTTTTCTGCATATGATTGATAGATATGAGATGTTAGGCTATATAGAAAGTGATGACCTCCTTTGCCTTCTGTCTTGAGATTAACACTTATGTAGGCCGTAAATATAAAACCTGTTAGGGAGCTTACTGGTGTAAACCAATCAGTATTTTTTTCTTGAATCAAAATTGTGCCCTTTTACCAAGAGGACTACTATTTATACTAGTCTTTCTCTTAACCAGAAATAGCAAGCTTAACTAACTACTCTAACAGCTAACAACCAACTTTCCCAACATCCATATCAACTGAAAATTTACCCACATCACTCACGTTCCAAAATAAGCTCCACAAGAGAAGAACCCAACTGGATTAATTAGAGGCAAGCAGTTATTGTTGTTTTGTATAAAAAACAATAATTGTCAAATTGGAGTCAACCTTGAAGTTCACTGACATATGAGAAAAGATGCCGTCTGAATCAAGTTTCCAAAGCAGTCCATCCTTATAAGTGCTTAGCCTTATCAGATTGAGCTTAATAGAAAAAAGGATGCACTCTTTACTTTTCAATCTCCTAGTCTCCTCCTCAAGCCTACATCCCATAGACTCCTGTTTCTGTAGATTCTTAATTTCGGTTTTTGGAACATCAGTATCTTGTGAGAAATAGGAGTGTCTATCATCCAACCATCTTTCACAAATGTAATTGTCTCTCATGCCAACTTTGTCTACAATTAAATTACAAATTATCAATGGACCTTGGGTTTTGACAACTCCGTGGCTAACAATCAACTCCATGATCACGACCTTCTACATTTGTGAGCCATCGGATGGGATAAGAACAGCATTTACTCCATAAAACTTCTACACCAGTGCCACTGTATTATTAAGGTTAAATTGCATACATCTAGACTAATCTCCTATTAAAATGGACTGAATACACCAAGAAGGTTGCGCAAACAGACACTTGGTTACAACATCATAATATTTTTTACTTGTAGTGCTTTCTCATCTGAACTCATAAGTTTCCTCTTTATCTGTTTGTTTGGGGATAAAATGATTGGCAATTTATCTTGCTTCCACAAAAATGAAAGAAAATGGTTTCTGCTCTTTGTTTCCTTTTATTTTCTAGACATATAACAGTAGCTTTTCCGACCACAAATTTCAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCCTATCTTAATCGATTGGGCACATTGCTGATCAATAACAATAGAATCACTCGTATCAATCCAAATATTGGAGGTGAGCTTTCCATTATGCCTTCATAGTATTATATAGGCACTGTATGGTAACCATTTTGGTTTCGTGTTCTCTTTCAAAATATTATATTTTTTACTCTGAAAATTTTGTTTTGGTGAGTTTTCCACCTTTCATGAGAACACATTTGAAGTCTAAATCAAAATTCAAAAACAAAATCAAGATTTTAAAAATTACTCATTTTACTTCTCAAAATTTTTCTTGGCGTTTTCAAAACGATATTTAAGTGCAGGTGATGAATCAAGGAAATTATATGTGAAAGTATTGTTTACAAGCTTAATTTTCAAAAATAAAAAAACCAAAAAAACAAAATGGTTATTTGATGGGCTTTAGCAGTATTATTTTTGAAATTATGTTCTTAAAAAATCAATTGTCTTTGTTCATTTCAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCATCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACAAAGAAGCCAAATTATAGATTGTATGTCATCCACAAGTTGAAGTCAGTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGTAACTTTTTCCTGCATTTGGACCTTACTATTTAAGGAATGGCTTTAATTCTATACTTGTTTCTGCATTTTACATCGACAATCCAGAAACGTTTAGAAGAGAATTTCAGGTTTGATTCAAATTTTTTATCCGATGGGGTATTTTGAAAATGTTCTAACTTTTAGTATTTGTAAGTACGTAGACCTTGAGTTTTTTTTTATTGTATTTAATATGATATTTGACTCTAAGTTGTGTTTTGATTGTGCTAGTTTCTAACAAATCTTAAACTTCTTGCTATTTTTAGAAGTATTATGCAATCCATGTTCTATTGTTTATTAGAGACTAGAGAGGACACGTTTCCTGCGCATGATAAATGTGCATATGCTCATATGTTAATACCTAAAGAATACAAATGCATTCAGTTTTAATGTCCACAATCATGTGCCTGAGAATTAGTTTTTTGGCTAAAGAAATAAGAAGTAAAAATACTGAAGAAGTGCCTATAAATAGAGTTGAACTTTATTCTATTATAGTAGAACATCCGTGGACAACTAGGATGTGCACGTGTAAGAGTCACTATTTTTGGACAAGTAGGGTTCCACTCTACTTCATTCAACTCCGATTCAATGTGTATGCTTGGTTTAGAGTCTAATTTTGTTCTTGAATCTAATTGGTGCATACATACAAAAATTTCTTGTTGTGTTGGACTTTGGGCACTAGATATCCAATGCCTACTGCATCTCTTCATTTCTAAATGTCAAATGACAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAGGCGAAGAAGGAATCTGTGAAGACATTCGTTCCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCACCAACACCGGAGCAAATTATAGCTATAAAGGTGTGTACGCTATGAAAAAAACTTAAGTTCACCTGCCTTTTCTTGTCTGGAGAAAGGTCAAGCTCTAAAACTTTTAGGGTAAAATGCACTTTTGGTCCAGAGTTCAGAGTCAAATTGCTGAGAAAAAAATTGCTGAAGTTTCAAAACAGATATTTTAATCCATGAGGTCTAGTAAATAGTTCTATATAGTCCTTGACATTTTAATTCATAATGCTTACATGTGAAAAAAAAGTGTATTTTTCCGAACCTCTTTTGTTAACTACCATTTCCTCACGGTAAAAGTATAACAAGAAATGTATTTTTAGGGATTAAAAATTCAAATGGCATCACCTAATATATGGCTTTTGTACAAGTGTTTCACCATCACATGCTTCCTACAACATCTTCTGATCAATCCATTTTTCACATTACAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGTATGCTTCGTTTTCGTGTCTTCTACAGTCCCCCTCCTCAAAAGGAAAATGCAGGAGAAAAATCTCTATTTAAATGTTATGGGAGTAATAACGTGAGAAAACTCTTCTTTGTTGGCACAGGCGCTCAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGACAATATTGCACAAAACATCACAAAAGACAAAGACGATAAGACAATGTCCGATAGCGGAGACGAAGAACATGTAACAAATGATGAATCCACACCTATGGAGCAGGTACCACAAACCTTTATGCCTCAGATCGGTTGTTTTCTTTGAGCATATTTCTTTCTTATACCTTTGACGATTTCTAGTTAACGATGTATATCATGTATGTTTTTCATTATTCTGTTTGTGGTTGTAGGAATAA

mRNA sequence

ATGGTGAGACTGACGGTCGATTTAATTTGGAAAAGCCCTCATTTTTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAGGCGAAGAAGGAATCTGTGAAGACATTCGTTCCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCACCAACACCGGAGCAAATTATAGCTATAAAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGCGCTCAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGACAATATTGCACAAAACATCACAAAAGACAAAGACGATAAGACAATGTCCGATAGCGGAGACGAAGAACATGTAACAAATGATGAATCCACACCTATGGAGCAGGAATAA

Coding sequence (CDS)

ATGGTGAGACTGACGGTCGATTTAATTTGGAAAAGCCCTCATTTTTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAGGCGAAGAAGGAATCTGTGAAGACATTCGTTCCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCACCAACACCGGAGCAAATTATAGCTATAAAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGCGCTCAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGACAATATTGCACAAAACATCACAAAAGACAAAGACGATAAGACAATGTCCGATAGCGGAGACGAAGAACATGTAACAAATGATGAATCCACACCTATGGAGCAGGAATAA

Protein sequence

MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNIAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE

Homology

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BLAST of CsGy6G007220 vs. NCBI nr
Match: XP_004140564.2 (PREDICTED: U2 small nuclear ribonucleoprotein A', partial [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 4.7e-65
Identity = 165/278 (59.35%), Postives = 165/278 (59.35%), Query Frame = 0


Query: 2   VRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE-------------------- 61
           VRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE                    
Sbjct: 13  VRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMP 72

Query: 62  ------------------------------------------------------------ 121
                                                                       
Sbjct: 73  YLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSLL 132

Query: 122 --------------------------------ERLEARNLFSSKEVEEEAKKESVKTFVP 168
                                           ERLEARNLFSSKEVEEEAKKESVKTFVP
Sbjct: 133 DNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVP 192

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BLAST of CsGy6G007220 vs. NCBI nr
Match: XP_022960458.1 (U2 small nuclear ribonucleoprotein A' [Cucurbita moschata] >XP_023514252.1 U2 small nuclear ribonucleoprotein A' [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.6 bits (584), Expect = 8.0e-57
Identity = 155/286 (54.20%), Postives = 158/286 (55.24%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE------------------- 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE                   
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHXXXXXXXXXVNLVEIDPLASLPKLQFLSL 120

Query: 121 ---------------------------------ERLEARNLFSSKEVEEEAKKESVKTFV 168
                                            ERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

[Close]

BLAST of CsGy6G007220 vs. NCBI nr
Match: XP_023005060.1 (U2 small nuclear ribonucleoprotein A' [Cucurbita maxima])

HSP 1 Score: 228.0 bits (580), Expect = 2.3e-56
Identity = 154/286 (53.85%), Postives = 158/286 (55.24%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE------------------- 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE                   
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHXXXXXXXXXVNLVEIDPLASLPKLQFLSL 120

Query: 121 ---------------------------------ERLEARNLFSSKEVEEEAKKESVKTFV 168
                                            ERLEARNLFSSKEVEEEAKKESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

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BLAST of CsGy6G007220 vs. NCBI nr
Match: KGN46395.1 (hypothetical protein Csa_6G089220 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 2.6e-55
Identity = 125/127 (98.43%), Postives = 126/127 (99.21%), Query Frame = 0


Query: 41  EERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKA 100
           +ERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKA
Sbjct: 94  KERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKA 153

Query: 101 AIVNSQTLEEVARLEQALKSGQLPADLNLLEDNIAQNITKDKDDKTMSDSGDEEHVTNDE 160
           AIVNSQTLEEVARLEQALKSGQLPADLNLLEDN AQNITKDKDDKTMSDSGDEEHVTNDE
Sbjct: 154 AIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDE 213

Query: 161 STPMEQE 168
           STPMEQE
Sbjct: 214 STPMEQE 220

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BLAST of CsGy6G007220 vs. NCBI nr
Match: XP_022148876.1 (U2 small nuclear ribonucleoprotein A' [Momordica charantia])

HSP 1 Score: 218.8 bits (556), Expect = 1.4e-53
Identity = 149/285 (52.28%), Postives = 154/285 (54.04%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE------------------- 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE                   
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPKLHXXXXXXXXXVNLVEIDPLASLPKLQFLSL 120

Query: 121 ---------------------------------ERLEARNLFSSKEVEEEAKKESVKTFV 167
                                            ERLEAR+LFSSKEVEEEAK ESVKTFV
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARSLFSSKEVEEEAKNESVKTFV 180

[Close]

BLAST of CsGy6G007220 vs. TAIR10
Match: AT1G09760.1 (U2 small nuclear ribonucleoprotein A)

HSP 1 Score: 89.0 bits (219), Expect = 3.1e-18
Identity = 78/234 (33.33%), Postives = 98/234 (41.88%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEERLEARNLFSSKEVEEE-- 60
           MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATE++ +  +L  ++ V+ E  
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 -----AKKESVKTFVPGEVE----------KASKPVEEKQ-------------------- 128
                 KK + + +V  +++          KA +  E                       
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEXXXXXXXXXXXXXX 180

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BLAST of CsGy6G007220 vs. Swiss-Prot
Match: sp|P43333|RU2A_ARATH (U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana OX=3702 GN=At1g09760 PE=2 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 5.5e-17
Identity = 78/234 (33.33%), Postives = 98/234 (41.88%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEERLEARNLFSSKEVEEE-- 60
           MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATE++ +  +L  ++ V+ E  
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 -----AKKESVKTFVPGEVE----------KASKPVEEKQ-------------------- 128
                 KK + + +V  +++          KA +  E                       
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEXXXXXXXXXXXXXX 180

[Close]

BLAST of CsGy6G007220 vs. Swiss-Prot
Match: sp|P09661|RU2A_HUMAN (U2 small nuclear ribonucleoprotein A' OS=Homo sapiens OX=9606 GN=SNRPA1 PE=1 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 5.2e-07
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 1  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEERLEARNLFSSKEVEE 58
          MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT ++ +A + FS  E+ +
Sbjct: 1  MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAID-FSDNEIRK 56

[Close]

BLAST of CsGy6G007220 vs. Swiss-Prot
Match: sp|Q4R8Y8|RU2A_MACFA (U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis OX=9541 GN=SNRPA1 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.2e-07
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 1  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEERLEARNLFSSKEVEE 58
          MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT ++ +A + FS  E+ +
Sbjct: 1  MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAID-FSDNEIRK 56

[Close]

BLAST of CsGy6G007220 vs. Swiss-Prot
Match: sp|P57784|RU2A_MOUSE (U2 small nuclear ribonucleoprotein A' OS=Mus musculus OX=10090 GN=Snrpa1 PE=1 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 5.2e-07
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 1  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEERLEARNLFSSKEVEE 58
          MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT ++ +A + FS  E+ +
Sbjct: 1  MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAID-FSDNEIRK 56

[Close]

BLAST of CsGy6G007220 vs. Swiss-Prot
Match: sp|Q9BLB6|RU2A_CAEEL (Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans OX=6239 GN=mog-2 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.3e-05
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 1  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEERLEARNL 50
          MVRLT +L  + P F N++  RE++LRG KI VIEN+G T ++ +  +L
Sbjct: 1  MVRLTTELFAERPQFVNSVNMREINLRGQKIPVIENMGVTRDQFDVIDL 49

[Close]

BLAST of CsGy6G007220 vs. TrEMBL
Match: tr|A0A0A0K9F1|A0A0A0K9F1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G089220 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.7e-55
Identity = 125/127 (98.43%), Postives = 126/127 (99.21%), Query Frame = 0


Query: 41  EERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKA 100
           +ERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKA
Sbjct: 94  KERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKA 153

Query: 101 AIVNSQTLEEVARLEQALKSGQLPADLNLLEDNIAQNITKDKDDKTMSDSGDEEHVTNDE 160
           AIVNSQTLEEVARLEQALKSGQLPADLNLLEDN AQNITKDKDDKTMSDSGDEEHVTNDE
Sbjct: 154 AIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDE 213

Query: 161 STPMEQE 168
           STPMEQE
Sbjct: 214 STPMEQE 220

[Close]

BLAST of CsGy6G007220 vs. TrEMBL
Match: tr|A0A1S3CAU7|A0A1S3CAU7_CUCME (U2 small nuclear ribonucleoprotein A' OS=Cucumis melo OX=3656 GN=LOC103498903 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 133/279 (47.67%), Postives = 146/279 (52.33%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEERLEARNLFSSKEVEEE-- 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE++ +A +L  ++ V+ E  
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 -----AKKESVKTFVPGEVEKA-------------------------------------- 168
                 KK + + +V  +++                                        
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNXXXXXXXXXXXXXXXXXXXX 180

[Close]

BLAST of CsGy6G007220 vs. TrEMBL
Match: tr|E5GB46|E5GB46_CUCME (U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 133/279 (47.67%), Postives = 146/279 (52.33%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEERLEARNLFSSKEVEEE-- 60
           MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE++ +A +L  ++ V+ E  
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 -----AKKESVKTFVPGEVEKA-------------------------------------- 168
                 KK + + +V  +++                                        
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNXXXXXXXXXXXXXXXXXXXX 180

[Close]

BLAST of CsGy6G007220 vs. TrEMBL
Match: tr|A0A059ADU7|A0A059ADU7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J01697 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.0e-39
Identity = 124/287 (43.21%), Postives = 140/287 (48.78%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE------------------- 60
           MVRL+ DLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE                   
Sbjct: 1   MVRLSADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFXXXXXXXXXXXXXXVNLAEIDPLASLPRLQYLGL 120

Query: 121 ---------------------------------ERLEARNLFSSKEVEEEAKKESVKTFV 168
                                            ERLEA  LFSSKEVEEEAKKES KTF+
Sbjct: 121 LDNNVTKKPNYRLYVIHKLKSLRVLDFRKVKSKERLEAEQLFSSKEVEEEAKKESTKTFM 180

[Close]

BLAST of CsGy6G007220 vs. TrEMBL
Match: tr|U7DXL9|U7DXL9_POPTR (U2 small nuclear ribonucleoprotein A OS=Populus trichocarpa OX=3694 GN=POPTR_003G158800v3 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.5e-38
Identity = 124/285 (43.51%), Postives = 139/285 (48.77%), Query Frame = 0


Query: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATE------------------- 60
           MVRLT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATE                   
Sbjct: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEXXXXXXXXXXXXXXXXXLAEIDPLSSLPKLQFLSL 120

Query: 121 ---------------------------------ERLEARNLFSSKEVEEEAKKESVKTFV 168
                                            ER EA +LFSSKEVEEEAK+ESVKTF 
Sbjct: 121 LDNTITKKPNYRLYVIHKLKSLRVLDFKKVKAKERAEAEHLFSSKEVEEEAKRESVKTFT 180

The following BLAST results are available for this feature:

BLAST of CsGy6G007220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140564.2	4.7e-65	59.35	PREDICTED: U2 small nuclear ribonucleoprotein A', partial [Cucumis sativus]	[more]
XP_022960458.1	8.0e-57	54.20	U2 small nuclear ribonucleoprotein A' [Cucurbita moschata] >XP_023514252.1 U2 sm...	[more]
XP_023005060.1	2.3e-56	53.85	U2 small nuclear ribonucleoprotein A' [Cucurbita maxima]	[more]
KGN46395.1	2.6e-55	98.43	hypothetical protein Csa_6G089220 [Cucumis sativus]	[more]
XP_022148876.1	1.4e-53	52.28	U2 small nuclear ribonucleoprotein A' [Momordica charantia]	[more]

BLAST of CsGy6G007220 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09760.1	3.1e-18	33.33	U2 small nuclear ribonucleoprotein A	[more]

BLAST of CsGy6G007220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P43333\|RU2A_ARATH	5.5e-17	33.33	U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana OX=3702 GN=At1g097...	[more]
sp\|P09661\|RU2A_HUMAN	5.2e-07	50.88	U2 small nuclear ribonucleoprotein A' OS=Homo sapiens OX=9606 GN=SNRPA1 PE=1 SV=...	[more]
sp\|Q4R8Y8\|RU2A_MACFA	5.2e-07	50.88	U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis OX=9541 GN=SNRPA1 P...	[more]
sp\|P57784\|RU2A_MOUSE	5.2e-07	50.88	U2 small nuclear ribonucleoprotein A' OS=Mus musculus OX=10090 GN=Snrpa1 PE=1 SV...	[more]
sp\|Q9BLB6\|RU2A_CAEEL	1.3e-05	46.94	Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans OX=6239...	[more]

BLAST of CsGy6G007220 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K9F1\|A0A0A0K9F1_CUCSA	1.7e-55	98.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G089220 PE=4 SV=1	[more]
tr\|A0A1S3CAU7\|A0A1S3CAU7_CUCME	1.4e-44	47.67	U2 small nuclear ribonucleoprotein A' OS=Cucumis melo OX=3656 GN=LOC103498903 PE...	[more]
tr\|E5GB46\|E5GB46_CUCME	1.4e-44	47.67	U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo OX=412675 PE=4 ...	[more]
tr\|A0A059ADU7\|A0A059ADU7_EUCGR	5.0e-39	43.21	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J01697 PE=4 SV...	[more]
tr\|U7DXL9\|U7DXL9_POPTR	1.5e-38	43.51	U2 small nuclear ribonucleoprotein A OS=Populus trichocarpa OX=3694 GN=POPTR_003...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0009409	response to cold
biological_process	GO:0008150	biological_process
cellular_component	GO:0015030	Cajal body
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G007220.1	CsGy6G007220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14580	LRR_9	coord: 1..49 e-value: 4.2E-16 score: 58.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..167
None	No IPR available	PANTHER	PTHR10552	U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 82..145
None	No IPR available	PANTHER	PTHR10552	U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 3..55
None	No IPR available	PANTHER	PTHR10552:SF6	U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A'	coord: 82..145
None	No IPR available	PANTHER	PTHR10552:SF6	U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A'	coord: 3..55

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G007220	Cla007083	Watermelon (97103) v1	cgybwmB501
CsGy6G007220	Csa6G089220	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G007220	MELO3C022370	Melon (DHL92) v3.5.1	cgybmeB379
CsGy6G007220	CSPI06G07220	Wild cucumber (PI 183967)	cgybcpiB288
CsGy6G007220	CmaCh17G013900	Cucurbita maxima (Rimu)	cgybcmaB751
CsGy6G007220	CmaCh08G000310	Cucurbita maxima (Rimu)	cgybcmaB871
CsGy6G007220	CmoCh08G000340	Cucurbita moschata (Rifu)	cgybcmoB853
CsGy6G007220	Lsi09G017790	Bottle gourd (USVL1VR-Ls)	cgyblsiB366
CsGy6G007220	Cp4.1LG17g09550	Cucurbita pepo (Zucchini)	cgybcpeB783
CsGy6G007220	MELO3C022370.2	Melon (DHL92) v3.6.1	cgybmedB381
CsGy6G007220	CsaV3_6G007610	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G007220	Cla97C06G110920	Watermelon (97103) v2	cgybwmbB446
CsGy6G007220	Bhi12G002109	Wax gourd	cgybwgoB509
CsGy6G007220	Carg03798	Silver-seed gourd	carcgybB0968

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G007220	Cucurbita moschata (Rifu)	cgybcmoB734
CsGy6G007220	Cucurbita pepo (Zucchini)	cgybcpeB722
CsGy6G007220	Watermelon (Charleston Gray)	cgybwcgB438
CsGy6G007220	Silver-seed gourd	carcgybB0011