MELO3C020257.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020257.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr06 : 15527344 .. 15527715 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACACCGACAACAACAACAATGGTAGCGGTAGCCATTATTGTCGTAGTTTCGACTATAAGTGCAAGTCATTGCAAGGCTGCTTCTCTGAATCCTAACTTAGGCAATGAGACTGCCACAACGGCTACATCATCGACACGGTGCAACAGTCTCGACAAGGAATGCCTCATTGGAGTCGAAGATGAAGACATTGAAAACTCAGCATTTCCAAGCTTATATAGACCAATTAGAGCCGGTATTCGAACTGGAAATCCGAAACAGTCGGTATGTGATCGGGACTTCGTGGAAAGATATGGCGACATCAGGTGTCTCGGCACGCGGTCGTCCCAACCGAAAGAAAAATGTGGCCTATATAAGCGCAGCTGTTAA

mRNA sequence

ATGGCAACACCGACAACAACAACAATGGTAGCGGTAGCCATTATTGTCGTAGTTTCGACTATAAGTGCAAGTCATTGCAAGGCTGCTTCTCTGAATCCTAACTTAGGCAATGAGACTGCCACAACGGCTACATCATCGACACGGTGCAACAGTCTCGACAAGGAATGCCTCATTGGAGTCGAAGATGAAGACATTGAAAACTCAGCATTTCCAAGCTTATATAGACCAATTAGAGCCGGTATTCGAACTGGAAATCCGAAACAGTCGGTATGTGATCGGGACTTCGTGGAAAGATATGGCGACATCAGGTGTCTCGGCACGCGGTCGTCCCAACCGAAAGAAAAATGTGGCCTATATAAGCGCAGCTGTTAA

Coding sequence (CDS)

ATGGCAACACCGACAACAACAACAATGGTAGCGGTAGCCATTATTGTCGTAGTTTCGACTATAAGTGCAAGTCATTGCAAGGCTGCTTCTCTGAATCCTAACTTAGGCAATGAGACTGCCACAACGGCTACATCATCGACACGGTGCAACAGTCTCGACAAGGAATGCCTCATTGGAGTCGAAGATGAAGACATTGAAAACTCAGCATTTCCAAGCTTATATAGACCAATTAGAGCCGGTATTCGAACTGGAAATCCGAAACAGTCGGTATGTGATCGGGACTTCGTGGAAAGATATGGCGACATCAGGTGTCTCGGCACGCGGTCGTCCCAACCGAAAGAAAAATGTGGCCTATATAAGCGCAGCTGTTAA

Protein sequence

MATPTTTTMVAVAIIVVVSTISASHCKAASLNPNLGNETATTATSSTRCNSLDKECLIGVEDEDIENSAFPSLYRPIRAGIRTGNPKQSVCDRDFVERYGDIRCLGTRSSQPKEKCGLYKRSC

Homology

[Close]

BLAST of MELO3C020257.2 vs. NCBI nr
Match: KGN57814.1 (hypothetical protein Csa_3G316270 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 1.3e-24
Identity = 63/101 (62.38%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 23  ASHCKAASLNPNLGNETATTATSSTRCNSLDKECLIGVEDEDIENSAFPSLYRPIRAGIR 82
           ASHCKAASLN NLGNET T ATSST CNSLDKECLIGVED++IE SAFPSLY      +R
Sbjct: 33  ASHCKAASLNSNLGNETTTAATSSTWCNSLDKECLIGVEDDNIETSAFPSLYNT----VR 92

Query: 83  TGNPKQSVCDRDFVERYGDIRCLGTRSSQPKEKCGLYKRSC 124
           T N +++VC R  V RY + RCL  +   P +KC  + RSC
Sbjct: 93  TANGQKAVCGR--VGRYDNQRCLPQKRPNPIQKCSTFTRSC 127

[Close]

BLAST of MELO3C020257.2 vs. TrEMBL
Match: tr|A0A0A0LA12|A0A0A0LA12_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G316270 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.8e-25
Identity = 63/101 (62.38%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 23  ASHCKAASLNPNLGNETATTATSSTRCNSLDKECLIGVEDEDIENSAFPSLYRPIRAGIR 82
           ASHCKAASLN NLGNET T ATSST CNSLDKECLIGVED++IE SAFPSLY      +R
Sbjct: 33  ASHCKAASLNSNLGNETTTAATSSTWCNSLDKECLIGVEDDNIETSAFPSLYNT----VR 92

Query: 83  TGNPKQSVCDRDFVERYGDIRCLGTRSSQPKEKCGLYKRSC 124
           T N +++VC R  V RY + RCL  +   P +KC  + RSC
Sbjct: 93  TANGQKAVCGR--VGRYDNQRCLPQKRPNPIQKCSTFTRSC 127

The following BLAST results are available for this feature:

BLAST of MELO3C020257.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57814.1	1.3e-24	62.38	hypothetical protein Csa_3G316270 [Cucumis sativus]	[more]

BLAST of MELO3C020257.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C020257.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C020257.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LA12\|A0A0A0LA12_CUCSA	8.8e-25	62.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G316270 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020257.2.1	MELO3C020257.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C020257.2	Csa3G316270	Cucumber (Chinese Long) v2	cumedB239
MELO3C020257.2	CSPI03G21470	Wild cucumber (PI 183967)	cpimedB240
MELO3C020257.2	Bhi01G001512	Wax gourd	medwgoB546
MELO3C020257.2	CsaV3_3G021190	Cucumber (Chinese Long) v3	cucmedB247

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020257.2	Cucumber (Gy14) v2	cgybmedB216
MELO3C020257.2	Cucumber (Gy14) v1	cgymedB606
MELO3C020257.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C020257.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C020257.2	Cucurbita moschata (Rifu)	cmomedB261
MELO3C020257.2	Cucurbita moschata (Rifu)	cmomedB483
MELO3C020257.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C020257.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C020257.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C020257.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C020257.2	Watermelon (97103) v1	medwmB448
MELO3C020257.2	Silver-seed gourd	carmedB0521
MELO3C020257.2	Silver-seed gourd	carmedB0771
MELO3C020257.2	Watermelon (97103) v2	medwmbB424