MELO3C020257.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C020257.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr06 : 15527344 .. 15527715 (+)
Sequence length372
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACACCGACAACAACAACAATGGTAGCGGTAGCCATTATTGTCGTAGTTTCGACTATAAGTGCAAGTCATTGCAAGGCTGCTTCTCTGAATCCTAACTTAGGCAATGAGACTGCCACAACGGCTACATCATCGACACGGTGCAACAGTCTCGACAAGGAATGCCTCATTGGAGTCGAAGATGAAGACATTGAAAACTCAGCATTTCCAAGCTTATATAGACCAATTAGAGCCGGTATTCGAACTGGAAATCCGAAACAGTCGGTATGTGATCGGGACTTCGTGGAAAGATATGGCGACATCAGGTGTCTCGGCACGCGGTCGTCCCAACCGAAAGAAAAATGTGGCCTATATAAGCGCAGCTGTTAA

mRNA sequence

ATGGCAACACCGACAACAACAACAATGGTAGCGGTAGCCATTATTGTCGTAGTTTCGACTATAAGTGCAAGTCATTGCAAGGCTGCTTCTCTGAATCCTAACTTAGGCAATGAGACTGCCACAACGGCTACATCATCGACACGGTGCAACAGTCTCGACAAGGAATGCCTCATTGGAGTCGAAGATGAAGACATTGAAAACTCAGCATTTCCAAGCTTATATAGACCAATTAGAGCCGGTATTCGAACTGGAAATCCGAAACAGTCGGTATGTGATCGGGACTTCGTGGAAAGATATGGCGACATCAGGTGTCTCGGCACGCGGTCGTCCCAACCGAAAGAAAAATGTGGCCTATATAAGCGCAGCTGTTAA

Coding sequence (CDS)

ATGGCAACACCGACAACAACAACAATGGTAGCGGTAGCCATTATTGTCGTAGTTTCGACTATAAGTGCAAGTCATTGCAAGGCTGCTTCTCTGAATCCTAACTTAGGCAATGAGACTGCCACAACGGCTACATCATCGACACGGTGCAACAGTCTCGACAAGGAATGCCTCATTGGAGTCGAAGATGAAGACATTGAAAACTCAGCATTTCCAAGCTTATATAGACCAATTAGAGCCGGTATTCGAACTGGAAATCCGAAACAGTCGGTATGTGATCGGGACTTCGTGGAAAGATATGGCGACATCAGGTGTCTCGGCACGCGGTCGTCCCAACCGAAAGAAAAATGTGGCCTATATAAGCGCAGCTGTTAA

Protein sequence

MATPTTTTMVAVAIIVVVSTISASHCKAASLNPNLGNETATTATSSTRCNSLDKECLIGVEDEDIENSAFPSLYRPIRAGIRTGNPKQSVCDRDFVERYGDIRCLGTRSSQPKEKCGLYKRSC
Homology
[Close]
BLAST of MELO3C020257.2.1 vs. NCBI nr
Match: KGN57814.1 (hypothetical protein Csa_3G316270 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 1.3e-24
Identity = 63/101 (62.38%), Postives = 73/101 (72.28%), Query Frame = 0 

Query: 23  ASHCKAASLNPNLGNETATTATSSTRCNSLDKECLIGVEDEDIENSAFPSLYRPIRAGIR 82
           ASHCKAASLN NLGNET T ATSST CNSLDKECLIGVED++IE SAFPSLY      +R
Sbjct: 33  ASHCKAASLNSNLGNETTTAATSSTWCNSLDKECLIGVEDDNIETSAFPSLYNT----VR 92

Query: 83  TGNPKQSVCDRDFVERYGDIRCLGTRSSQPKEKCGLYKRSC 124
           T N +++VC R  V RY + RCL  +   P +KC  + RSC
Sbjct: 93  TANGQKAVCGR--VGRYDNQRCLPQKRPNPIQKCSTFTRSC 127

[Close]
BLAST of MELO3C020257.2.1 vs. TrEMBL
Match: tr|A0A0A0LA12|A0A0A0LA12_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G316270 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.8e-25
Identity = 63/101 (62.38%), Postives = 73/101 (72.28%), Query Frame = 0 

Query: 23  ASHCKAASLNPNLGNETATTATSSTRCNSLDKECLIGVEDEDIENSAFPSLYRPIRAGIR 82
           ASHCKAASLN NLGNET T ATSST CNSLDKECLIGVED++IE SAFPSLY      +R
Sbjct: 33  ASHCKAASLNSNLGNETTTAATSSTWCNSLDKECLIGVEDDNIETSAFPSLYNT----VR 92

Query: 83  TGNPKQSVCDRDFVERYGDIRCLGTRSSQPKEKCGLYKRSC 124
           T N +++VC R  V RY + RCL  +   P +KC  + RSC
Sbjct: 93  TANGQKAVCGR--VGRYDNQRCLPQKRPNPIQKCSTFTRSC 127

The following BLAST results are available for this feature:
BLAST of MELO3C020257.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57814.11.3e-2462.38hypothetical protein Csa_3G316270 [Cucumis sativus][more]
BLAST of MELO3C020257.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C020257.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C020257.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LA12|A0A0A0LA12_CUCSA8.8e-2562.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G316270 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C020257.2MELO3C020257.2gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C020257.2.1.CDS.1MELO3C020257.2.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C020257.2.1.exon.1MELO3C020257.2.1.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C020257.2.1MELO3C020257.2.1-proteinpolypeptide