CsaV3_3G021190 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G021190
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 17868118 .. 17869585 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTATTTTGTCTCTCTCTTTAACTATTGAGATTATTAGTTACAATCGCACCTACAACATTTAATTTGATAAATTTTTTAATAGTTGTCAATCAACATCATAACTTGAGGGTGGTGGTTATATATATTTAATGTGACTCTTTTCATTTGCTATTTATTGAGCTCAAAACTGGCCTAAAGATTTTTGTCCTCTCTCTCTTCTCATCTTCATGCCACATTCTTCAAACACCAAAACATCAATGGCAACACCGACAACAACAACAATGGTAGCGGTAGCCATTATTGTGGTGGTTTCAACTATAGGTGCAAGTCATTGCAAGGCTGCTTCTCTAAATTCAAACTTGGGCAATGAAACCACCACGGCAGCTACATCATCCACATGGTGCAACAGTCTCGACAAGGAATGCCTCATTGGAGTCGAAGATGACAACATTGAAACCTCAGCATTTCCAAGCTTATATAATACTGTGCGGACTGCAAATGGGCAAAAGGCAGTATGTGGTCGGGTGGGAAGATACGATAACCAGAGATGTCTCCCCCAGAAGAGGCCCAACCCGATTCAAAAATGTTCTACATTTACTCGCAGCTGTTAATCACCAACACCAAGTAATTAGAAAGTGAACAGAAAATTCAATGTTGACACATGTGGTTTTCACATTTTCTTTTATTTTTATTTTTAAAATTTGGAGTGAAGTTTATATGTTATTTACTACCTACCTTACTTAATTAATGTCGCTTGTATTTATCTAATCACTCTGCTTTCGCTAAGCTTAACTTCTTCTTTCTTCTTTCACCTTCAAACATGGAAATTCACTCTTCATTTGGTGCTGATACTCGTTTTCCCCTACAAAAATGCTAATTTTCGAATTTAAAGTATTTTATGACATTTATTTATTAATTATGAATGTCATTGAATCAATTTAATTATTATTTTTAAATAAAGAAAATATTTGATTCAAATTAGAAACTGGAACCTAGCCCTTTTCTTCTTTCCTTTTTGTGGCTCAACCCCCTCACTTCCATCTCTTCTCTTGACTGGATACACAACCATCCAGACTCGGGTCGAACCTGTCAACCACTCGAGCGTTAGGCGCCTCTGTCGCGGGACATGCATGCATGTCGATCATTCTCCACCTGAGTGCCACTTACCGCTCTCGATTTTTGTCAGTTTTCGTGGTCGCACTCTTGCTTCTGAATTGTGATCGTGACAAACTCCTTCTCACCCTTCTTCCCCTGAATCCAAACATTGAATCCGCGCGACTGCATTGCGATGTCGCAAAAGAAAAATGGATTTTGCACTCTTTTAAGTGATAGTTTCCCAATTTTTTAGTCTTTTTGGCCTAAATACTTGATTAGGCTCCAAATTGGTCCATTTTACCACGTTTTCTTCTATCTCTTTAATGTTTGAAACCTATAAAATAATCAAATAAACACATAAAATGTAAGAACCTCGAATTAAGTAAACCTAG

mRNA sequence

ATGCCACATTCTTCAAACACCAAAACATCAATGGCAACACCGACAACAACAACAATGGTAGCGGTAGCCATTATTGTGGTGGTTTCAACTATAGGTGCAAGTCATTGCAAGGCTGCTTCTCTAAATTCAAACTTGGGCAATGAAACCACCACGGCAGCTACATCATCCACATGGTGCAACAGTCTCGACAAGGAATGCCTCATTGGAGTCGAAGATGACAACATTGAAACCTCAGCATTTCCAAGCTTATATAATACTGTGCGGACTGCAAATGGGCAAAAGGCAGTATGTGGTCGGGTGGGAAGATACGATAACCAGAGATGTCTCCCCCAGAAGAGGCCCAACCCGATTCAAAAATGTTCTACATTTACTCGCAGCTGTTAA

Coding sequence (CDS)

ATGCCACATTCTTCAAACACCAAAACATCAATGGCAACACCGACAACAACAACAATGGTAGCGGTAGCCATTATTGTGGTGGTTTCAACTATAGGTGCAAGTCATTGCAAGGCTGCTTCTCTAAATTCAAACTTGGGCAATGAAACCACCACGGCAGCTACATCATCCACATGGTGCAACAGTCTCGACAAGGAATGCCTCATTGGAGTCGAAGATGACAACATTGAAACCTCAGCATTTCCAAGCTTATATAATACTGTGCGGACTGCAAATGGGCAAAAGGCAGTATGTGGTCGGGTGGGAAGATACGATAACCAGAGATGTCTCCCCCAGAAGAGGCCCAACCCGATTCAAAAATGTTCTACATTTACTCGCAGCTGTTAA

Protein sequence

MPHSSNTKTSMATPTTTTMVAVAIIVVVSTIGASHCKAASLNSNLGNETTTAATSSTWCNSLDKECLIGVEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPIQKCSTFTRSC
Homology
[Close]
BLAST of CsaV3_3G021190 vs. NCBI nr
Match: KGN57814.1 (hypothetical protein Csa_3G316270 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 1.2e-52
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MPHSSNTKXXXXXXXXXXXXXXXXXXXXXTIGASHCKAASLNSNLGNETTTAATSSTWCN 60
           MPHSSNTKXXXXXXXXXXXXXXXXXXXXXTIGASHCKAASLNSNLGNETTTAATSSTWCN
Sbjct: 1   MPHSSNTKXXXXXXXXXXXXXXXXXXXXXTIGASHCKAASLNSNLGNETTTAATSSTWCN 60

Query: 61  SLDKECLIGVEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPIQKC 120
           SLDKECLIGVEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPIQKC
Sbjct: 61  SLDKECLIGVEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPIQKC 120

Query: 121 STFTRSC 128
           STFTRSC
Sbjct: 121 STFTRSC 127

[Close]
BLAST of CsaV3_3G021190 vs. NCBI nr
Match: KGN53789.1 (hypothetical protein Csa_4G129550 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 4.6e-04
Identity = 37/97 (38.14%), Postives = 52/97 (53.61%), Query Frame = 0 

Query: 33  ASHCKAAS-LNSNLGNETTTAATSSTWCNSLDKECLIGVEDDNIETSAFPSLYNTVRTAN 92
           +S+C AAS L SN  NET TA TS+ +CN L ++C   VE++ I        Y+T RT +
Sbjct: 22  SSYCNAASVLPSNFANETITAMTSTIFCNGLLQQC-FNVEENGIH------YYSTPRTGS 81

Query: 93  GQKAVCGRVGRYDNQRCL-PQKRPNPIQKCSTFTRSC 128
              +VCGR       +C+  Q  P P    S + R+C
Sbjct: 82  RASSVCGRFYNGSYIKCITTQGSPKPKDCRSAYDRTC 111

[Close]
BLAST of CsaV3_3G021190 vs. TrEMBL
Match: tr|A0A0A0LA12|A0A0A0LA12_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G316270 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 7.9e-53
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MPHSSNTKXXXXXXXXXXXXXXXXXXXXXTIGASHCKAASLNSNLGNETTTAATSSTWCN 60
           MPHSSNTKXXXXXXXXXXXXXXXXXXXXXTIGASHCKAASLNSNLGNETTTAATSSTWCN
Sbjct: 1   MPHSSNTKXXXXXXXXXXXXXXXXXXXXXTIGASHCKAASLNSNLGNETTTAATSSTWCN 60

Query: 61  SLDKECLIGVEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPIQKC 120
           SLDKECLIGVEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPIQKC
Sbjct: 61  SLDKECLIGVEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPIQKC 120

Query: 121 STFTRSC 128
           STFTRSC
Sbjct: 121 STFTRSC 127

[Close]
BLAST of CsaV3_3G021190 vs. TrEMBL
Match: tr|A0A0A0KY59|A0A0A0KY59_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G129550 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.1e-04
Identity = 37/97 (38.14%), Postives = 52/97 (53.61%), Query Frame = 0 

Query: 33  ASHCKAAS-LNSNLGNETTTAATSSTWCNSLDKECLIGVEDDNIETSAFPSLYNTVRTAN 92
           +S+C AAS L SN  NET TA TS+ +CN L ++C   VE++ I        Y+T RT +
Sbjct: 22  SSYCNAASVLPSNFANETITAMTSTIFCNGLLQQC-FNVEENGIH------YYSTPRTGS 81

Query: 93  GQKAVCGRVGRYDNQRCL-PQKRPNPIQKCSTFTRSC 128
              +VCGR       +C+  Q  P P    S + R+C
Sbjct: 82  RASSVCGRFYNGSYIKCITTQGSPKPKDCRSAYDRTC 111

The following BLAST results are available for this feature:
BLAST of CsaV3_3G021190 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57814.11.2e-52100.00hypothetical protein Csa_3G316270 [Cucumis sativus][more]
KGN53789.14.6e-0438.14hypothetical protein Csa_4G129550 [Cucumis sativus][more]
BLAST of CsaV3_3G021190 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G021190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G021190 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LA12|A0A0A0LA12_CUCSA7.9e-53100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G316270 PE=4 SV=1[more]
tr|A0A0A0KY59|A0A0A0KY59_CUCSA3.1e-0438.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G129550 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G021190.1CsaV3_3G021190.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G021190CSPI03G21470Wild cucumber (PI 183967)cpicucB144
CsaV3_3G021190MELO3C020257Melon (DHL92) v3.5.1cucmeB249
CsaV3_3G021190MELO3C020257.2Melon (DHL92) v3.6.1cucmedB247
CsaV3_3G021190Bhi01G001512Wax gourdcucwgoB274
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G021190Silver-seed gourdcarcucB0544
CsaV3_3G021190Silver-seed gourdcarcucB0801
CsaV3_3G021190Cucumber (Gy14) v2cgybcucB117
CsaV3_3G021190Cucumber (Gy14) v1cgycucB569
CsaV3_3G021190Cucurbita maxima (Rimu)cmacucB0281
CsaV3_3G021190Cucurbita maxima (Rimu)cmacucB0547
CsaV3_3G021190Cucurbita moschata (Rifu)cmocucB0272
CsaV3_3G021190Cucurbita moschata (Rifu)cmocucB0532
CsaV3_3G021190Cucurbita pepo (Zucchini)cpecucB0686
CsaV3_3G021190Cucurbita pepo (Zucchini)cpecucB0749
CsaV3_3G021190Bottle gourd (USVL1VR-Ls)cuclsiB231
CsaV3_3G021190Watermelon (Charleston Gray)cucwcgB241
CsaV3_3G021190Watermelon (97103) v1cucwmB254
CsaV3_3G021190Watermelon (97103) v2cucwmbB220