MELO3C020257 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020257
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Location	chr6 : 14450085 .. 14450456 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACACCGACAACAACAACAATGGTAGCGGTAGCCATTATTGTCGTAGTTTCGACTATAAGTGCAAGTCATTGCAAGGCTGCTTCTCTGAATCCTAACTTAGGCAATGAGACTGCCACAACGGCTACATCATCGACACGGTGCAACAGTCTCGACAAGGAATGCCTCATTGGAGTCGAAGATGAAGACATTGAAAACTCAGCATTTCCAAGCTTATATAGACCAATTAGAGCCGGTATTCGAACTGGAAATCCGAAACAGTCGGTATGTGATCGGGACTTCGTGGAAAGATATGGCGACATCAGGTGTCTCGGCACGCGGTCGTCCCAACCGAAAGAAAAATGTGGCCTATATAAGCGCAGCTGTTAA

mRNA sequence

ATGGCAACACCGACAACAACAACAATGGTAGCGGTAGCCATTATTGTCGTAGTTTCGACTATAAGTGCAAGTCATTGCAAGGCTGCTTCTCTGAATCCTAACTTAGGCAATGAGACTGCCACAACGGCTACATCATCGACACGGTGCAACAGTCTCGACAAGGAATGCCTCATTGGAGTCGAAGATGAAGACATTGAAAACTCAGCATTTCCAAGCTTATATAGACCAATTAGAGCCGGTATTCGAACTGGAAATCCGAAACAGTCGGTATGTGATCGGGACTTCGTGGAAAGATATGGCGACATCAGGTGTCTCGGCACGCGGTCGTCCCAACCGAAAGAAAAATGTGGCCTATATAAGCGCAGCTGTTAA

Coding sequence (CDS)

ATGGCAACACCGACAACAACAACAATGGTAGCGGTAGCCATTATTGTCGTAGTTTCGACTATAAGTGCAAGTCATTGCAAGGCTGCTTCTCTGAATCCTAACTTAGGCAATGAGACTGCCACAACGGCTACATCATCGACACGGTGCAACAGTCTCGACAAGGAATGCCTCATTGGAGTCGAAGATGAAGACATTGAAAACTCAGCATTTCCAAGCTTATATAGACCAATTAGAGCCGGTATTCGAACTGGAAATCCGAAACAGTCGGTATGTGATCGGGACTTCGTGGAAAGATATGGCGACATCAGGTGTCTCGGCACGCGGTCGTCCCAACCGAAAGAAAAATGTGGCCTATATAAGCGCAGCTGTTAA

Protein sequence

MATPTTTTMVAVAIIVVVSTISASHCKAASLNPNLGNETATTATSSTRCNSLDKECLIGVEDEDIENSAFPSLYRPIRAGIRTGNPKQSVCDRDFVERYGDIRCLGTRSSQPKEKCGLYKRSC*

Homology

[Close]

BLAST of MELO3C020257 vs. TrEMBL
Match: A0A0A0LA12_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G316270 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 4.6e-36
Identity = 84/123 (68.29%), Postives = 94/123 (76.42%), Query Frame = 1


Query: 1   MATPTTTTMVAVAIIVVVSTISASHCKAASLNPNLGNETATTATSSTRCNSLDKECLIGV 60
           MATPTTTTMVAVAIIVVVSTI ASHCKAASLN NLGNET T ATSST CNSLDKECLIGV
Sbjct: 11  MATPTTTTMVAVAIIVVVSTIGASHCKAASLNSNLGNETTTAATSSTWCNSLDKECLIGV 70

Query: 61  EDEDIENSAFPSLYRPIRAGIRTGNPKQSVCDRDFVERYGDIRCLGTRSSQPKEKCGLYK 120
           ED++IE SAFPSLY      +RT N +++VC R  V RY + RCL  +   P +KC  + 
Sbjct: 71  EDDNIETSAFPSLYNT----VRTANGQKAVCGR--VGRYDNQRCLPQKRPNPIQKCSTFT 127

Query: 121 RSC 124
           RSC
Sbjct: 131 RSC 127

[Close]

BLAST of MELO3C020257 vs. TrEMBL
Match: A0A0A0KY59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G129550 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-07
Identity = 46/125 (36.80%), Postives = 66/125 (52.80%), Query Frame = 1


Query: 1   MATPTTTTMVAVAIIVVVSTISASHCKAASLNP-NLGNETATTATSSTRCNSLDKECLIG 60
           MAT    +  A+ I+++  TIS S+C AAS+ P N  NET T  TS+  CN L ++C   
Sbjct: 1   MATAAAPSTTAMTILILTLTIS-SYCNAASVLPSNFANETITAMTSTIFCNGLLQQC-FN 60

Query: 61  VEDEDIENSAFPSLYRPIRAGIRTGNPKQSVCDRDFVERYGDIRCLGTRSS-QPKEKCGL 120
           VE+  I   + P          RTG+   SVC R +   Y  I+C+ T+ S +PK+    
Sbjct: 61  VEENGIHYYSTP----------RTGSRASSVCGRFYNGSY--IKCITTQGSPKPKDCRSA 111

Query: 121 YKRSC 124
           Y R+C
Sbjct: 121 YDRTC 111

[Close]

BLAST of MELO3C020257 vs. NCBI nr
Match: gi|700202681|gb|KGN57814.1| (hypothetical protein Csa_3G316270 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 6.6e-36
Identity = 84/123 (68.29%), Postives = 94/123 (76.42%), Query Frame = 1


Query: 1   MATPTTTTMVAVAIIVVVSTISASHCKAASLNPNLGNETATTATSSTRCNSLDKECLIGV 60
           MATPTTTTMVAVAIIVVVSTI ASHCKAASLN NLGNET T ATSST CNSLDKECLIGV
Sbjct: 11  MATPTTTTMVAVAIIVVVSTIGASHCKAASLNSNLGNETTTAATSSTWCNSLDKECLIGV 70

Query: 61  EDEDIENSAFPSLYRPIRAGIRTGNPKQSVCDRDFVERYGDIRCLGTRSSQPKEKCGLYK 120
           ED++IE SAFPSLY      +RT N +++VC R  V RY + RCL  +   P +KC  + 
Sbjct: 71  EDDNIETSAFPSLYNT----VRTANGQKAVCGR--VGRYDNQRCLPQKRPNPIQKCSTFT 127

Query: 121 RSC 124
           RSC
Sbjct: 131 RSC 127

[Close]

BLAST of MELO3C020257 vs. NCBI nr
Match: gi|700198631|gb|KGN53789.1| (hypothetical protein Csa_4G129550 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-07
Identity = 46/125 (36.80%), Postives = 66/125 (52.80%), Query Frame = 1


Query: 1   MATPTTTTMVAVAIIVVVSTISASHCKAASLNP-NLGNETATTATSSTRCNSLDKECLIG 60
           MAT    +  A+ I+++  TIS S+C AAS+ P N  NET T  TS+  CN L ++C   
Sbjct: 1   MATAAAPSTTAMTILILTLTIS-SYCNAASVLPSNFANETITAMTSTIFCNGLLQQC-FN 60

Query: 61  VEDEDIENSAFPSLYRPIRAGIRTGNPKQSVCDRDFVERYGDIRCLGTRSS-QPKEKCGL 120
           VE+  I   + P          RTG+   SVC R +   Y  I+C+ T+ S +PK+    
Sbjct: 61  VEENGIHYYSTP----------RTGSRASSVCGRFYNGSY--IKCITTQGSPKPKDCRSA 111

Query: 121 YKRSC 124
           Y R+C
Sbjct: 121 YDRTC 111

The following BLAST results are available for this feature:

BLAST of MELO3C020257 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA12_CUCSA	4.6e-36	68.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G316270 PE=4 SV=1	[more]
A0A0A0KY59_CUCSA	2.6e-07	36.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G129550 PE=4 SV=1	[more]

BLAST of MELO3C020257 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202681\|gb\|KGN57814.1\|	6.6e-36	68.29	hypothetical protein Csa_3G316270 [Cucumis sativus]	[more]
gi\|700198631\|gb\|KGN53789.1\|	3.8e-07	36.80	hypothetical protein Csa_4G129550 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU44100	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020257T1	MELO3C020257T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU44100	MU44100	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C020257	Csa3G316270	Cucumber (Chinese Long) v2	cumeB246
MELO3C020257	Bhi01G001512	Wax gourd	mewgoB542
MELO3C020257	CSPI03G21470	Wild cucumber (PI 183967)	cpimeB243
MELO3C020257	CsaV3_3G021190	Cucumber (Chinese Long) v3	cucmeB249

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020257	Cucurbita pepo (Zucchini)	cpemeB529
MELO3C020257	Cucurbita pepo (Zucchini)	cpemeB586
MELO3C020257	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C020257	Cucumber (Gy14) v2	cgybmeB212
MELO3C020257	Silver-seed gourd	carmeB0515
MELO3C020257	Silver-seed gourd	carmeB0756
MELO3C020257	Watermelon (97103) v2	mewmbB434
MELO3C020257	Cucumber (Gy14) v1	cgymeB609
MELO3C020257	Cucurbita maxima (Rimu)	cmameB243
MELO3C020257	Cucurbita maxima (Rimu)	cmameB431
MELO3C020257	Cucurbita moschata (Rifu)	cmomeB231
MELO3C020257	Cucurbita moschata (Rifu)	cmomeB421
MELO3C020257	Watermelon (Charleston Gray)	mewcgB427
MELO3C020257	Watermelon (97103) v1	mewmB461