CSPI03G21470 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G21470
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 17726104 .. 17726743 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAAAACTGGCCTAAAGATTTTTGTCCTCTCTCTCTTCTCATCTAATTCATGCCACATTCTTCAAACACCAAAACATCAATGGCAACACCGACAACAACAACAATGGTAGCGGTAGCCATTATTGTGGTGGTTTCAACTATAGGTGCAAGTCATTGCAAGGCTGCTTCTCTAAATTCAAACTTGGGCAATGAAACCACCACGGCAGCTACATCATCCACATGGTGCAACAGTCTCGACAAGGAATGCCTCATTGGAGTCGAAGATGACAACATTGAAACCTCAGCATTTCCAAGCTTATATAATACTGTGCGGACTGCAAATGGGCAAAAGGCAGTATGTGGTCGGGTGGGAAGATACGATAACCAGAGATGTCTCCCCCAGAAGAGGCCCAACCCGATTCAAAAATGTTCTACATTTACTCGCAGCTGTTAATCACCAACACCAAGTAATTAGAAAGTGAACAGAAAATTCAATGTCGACACATGTGGTTTTCACATTTTCTTTTATTTTTATTTTTAAAATTTGGAGTGAAGTTTATATGTTATTTACTACCTACCTTACTTAATTAATGTCGCTTGTATTTATCTAATCACTCTGCTTTCGCTAAGCTTAACTTCTTCTTTCTTCTTTCACCTTCA

mRNA sequence

ATGCCACATTCTTCAAACACCAAAACATCAATGGCAACACCGACAACAACAACAATGGTAGCGGTAGCCATTATTGTGGTGGTTTCAACTATAGGTGCAAGTCATTGCAAGGCTGCTTCTCTAAATTCAAACTTGGGCAATGAAACCACCACGGCAGCTACATCATCCACATGGTGCAACAGTCTCGACAAGGAATGCCTCATTGGAGTCGAAGATGACAACATTGAAACCTCAGCATTTCCAAGCTTATATAATACTGTGCGGACTGCAAATGGGCAAAAGGCAGTATGTGGTCGGGTGGGAAGATACGATAACCAGAGATGTCTCCCCCAGAAGAGGCCCAACCCGATTCAAAAATGTTCTACATTTACTCGCAGCTGTTAA

Coding sequence (CDS)

ATGCCACATTCTTCAAACACCAAAACATCAATGGCAACACCGACAACAACAACAATGGTAGCGGTAGCCATTATTGTGGTGGTTTCAACTATAGGTGCAAGTCATTGCAAGGCTGCTTCTCTAAATTCAAACTTGGGCAATGAAACCACCACGGCAGCTACATCATCCACATGGTGCAACAGTCTCGACAAGGAATGCCTCATTGGAGTCGAAGATGACAACATTGAAACCTCAGCATTTCCAAGCTTATATAATACTGTGCGGACTGCAAATGGGCAAAAGGCAGTATGTGGTCGGGTGGGAAGATACGATAACCAGAGATGTCTCCCCCAGAAGAGGCCCAACCCGATTCAAAAATGTTCTACATTTACTCGCAGCTGTTAA

Homology

[Close]

BLAST of CSPI03G21470 vs. TrEMBL
Match: A0A0A0LA12_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G316270 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 3.2e-64
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MPHSSNTKTSMATPTTTTMVAVAIIVVVSTIGASHCKAASLNSNLGNETTTAATSSTWCN 60
           MPHSSNTKTSMATPTTTTMVAVAIIVVVSTIGASHCKAASLNSNLGNETTTAATSSTWCN
Sbjct: 1   MPHSSNTKTSMATPTTTTMVAVAIIVVVSTIGASHCKAASLNSNLGNETTTAATSSTWCN 60

Query: 61  SLDKECLIGVEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPIQKC 120
           SLDKECLIGVEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPIQKC
Sbjct: 61  SLDKECLIGVEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPIQKC 120

Query: 121 STFTRSC 128
           STFTRSC
Sbjct: 121 STFTRSC 127

[Close]

BLAST of CSPI03G21470 vs. NCBI nr
Match: gi|700202681|gb|KGN57814.1| (hypothetical protein Csa_3G316270 [Cucumis sativus])

HSP 1 Score: 252.3 bits (643), Expect = 4.6e-64
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MPHSSNTKTSMATPTTTTMVAVAIIVVVSTIGASHCKAASLNSNLGNETTTAATSSTWCN 60
           MPHSSNTKTSMATPTTTTMVAVAIIVVVSTIGASHCKAASLNSNLGNETTTAATSSTWCN
Sbjct: 1   MPHSSNTKTSMATPTTTTMVAVAIIVVVSTIGASHCKAASLNSNLGNETTTAATSSTWCN 60

Query: 61  SLDKECLIGVEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPIQKC 120
           SLDKECLIGVEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPIQKC
Sbjct: 61  SLDKECLIGVEDDNIETSAFPSLYNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPIQKC 120

Query: 121 STFTRSC 128
           STFTRSC
Sbjct: 121 STFTRSC 127

The following BLAST results are available for this feature:

BLAST of CSPI03G21470 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G21470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA12_CUCSA	3.2e-64	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G316270 PE=4 SV=1	[more]

BLAST of CSPI03G21470 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G21470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202681\|gb\|KGN57814.1\|	4.6e-64	100.00	hypothetical protein Csa_3G316270 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G21470.1	CSPI03G21470.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G21470	Csa3G316270	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G21470	MELO3C020257	Melon (DHL92) v3.5.1	cpimeB243
CSPI03G21470	MELO3C020257.2	Melon (DHL92) v3.6.1	cpimedB240
CSPI03G21470	CsaV3_3G021190	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G21470	Bhi01G001512	Wax gourd	cpiwgoB271

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G21470	Cucumber (Gy14) v1	cgycpiB554
CSPI03G21470	Cucurbita maxima (Rimu)	cmacpiB244
CSPI03G21470	Cucurbita maxima (Rimu)	cmacpiB458
CSPI03G21470	Cucurbita moschata (Rifu)	cmocpiB232
CSPI03G21470	Cucurbita moschata (Rifu)	cmocpiB446
CSPI03G21470	Watermelon (Charleston Gray)	cpiwcgB240
CSPI03G21470	Watermelon (97103) v1	cpiwmB245
CSPI03G21470	Cucurbita pepo (Zucchini)	cpecpiB552
CSPI03G21470	Cucurbita pepo (Zucchini)	cpecpiB602
CSPI03G21470	Bottle gourd (USVL1VR-Ls)	cpilsiB210
CSPI03G21470	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G21470	Silver-seed gourd	carcpiB0545
CSPI03G21470	Silver-seed gourd	carcpiB0798
CSPI03G21470	Watermelon (97103) v2	cpiwmbB224