MELO3C018001 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018001
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA-directed RNA polymerase subunit beta
Location	chr7 : 26364289 .. 26364917 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTTCATTTTCTCTTAAACACAAAAAGAGATCAAGAATAAAGTTAGGATAAATGGAGGGTTTAATTCCTTATCTTTTCCATGCAATGAAGAAGCAAAAGCCACGCCACAGCTACAGAAGCCAATCCGTAGGTTCAAGCAGGAGCTACCATCTATTGATCACAGCCAACGATGAGTCGTCGCACCGACGAACACGATCGGATTACCAGCCACCAACATTTGAGTTTTTGGACCAACAACGACCGTCACAGGAGTTAACACATTCCCGCAGCGTCAACAAAGTCGCCTTTGGATCGTCTACTAGACCTAGTAATGGATTTGAATCTAACTTCTATTCTTATGCTGGTCAAGTTTCAAATAGGCCTGCTTATAGTTATGGTAATCCTCCTCGTTGAAAAAAATAATTAGCAAAATGTGAGGAGGAATATTATTATTGTTTAAAACTCTAATTAGCAATTTGGAAAATGTTTTTTCTTCTTCTTTTTATTTGTTGAATTGTATTGTTTGGTGAAGATCAATGTGTAAAGAGGTGGATCTCTCCATGAAAATATGGTCTGAGCAGCCACCTTTTATGAATTTGAAATTGTACATTAAATTTGTTGGAAAGTATTCTTTTCTTTAATTTGG

mRNA sequence

ATGCTTTTCATTTTCTCTTAAACACAAAAAGAGATCAAGAATAAAGTTAGGATAAATGGAGGGTTTAATTCCTTATCTTTTCCATGCAATGAAGAAGCAAAAGCCACGCCACAGCTACAGAAGCCAATCCGTAGGTTCAAGCAGGAGCTACCATCTATTGATCACAGCCAACGATGAGTCGTCGCACCGACGAACACGATCGGATTACCAGCCACCAACATTTGAGTTTTTGGACCAACAACGACCGTCACAGGAGTTAACACATTCCCGCAGCGTCAACAAAGTCGCCTTTGGATCGTCTACTAGACCTAGTAATGGATTTGAATCTAACTTCTATTCTTATGCTGGTCAAGTTTCAAATAGGCCTGCTTATAGTTATGGTAATCCTCCTCGTTGAAAAAAATAATTAGCAAAATGTGAGGAGGAATATTATTATTGTTTAAAACTCTAATTAGCAATTTGGAAAATGTTTTTTCTTCTTCTTTTTATTTGTTGAATTGTATTGTTTGGTGAAGATCAATGTGTAAAGAGGTGGATCTCTCCATGAAAATATGGTCTGAGCAGCCACCTTTTATGAATTTGAAATTGTACATTAAATTTGTTGGAAAGTATTCTTTTCTTTAATTTGG

Coding sequence (CDS)

ATGGAGGGTTTAATTCCTTATCTTTTCCATGCAATGAAGAAGCAAAAGCCACGCCACAGCTACAGAAGCCAATCCGTAGGTTCAAGCAGGAGCTACCATCTATTGATCACAGCCAACGATGAGTCGTCGCACCGACGAACACGATCGGATTACCAGCCACCAACATTTGAGTTTTTGGACCAACAACGACCGTCACAGGAGTTAACACATTCCCGCAGCGTCAACAAAGTCGCCTTTGGATCGTCTACTAGACCTAGTAATGGATTTGAATCTAACTTCTATTCTTATGCTGGTCAAGTTTCAAATAGGCCTGCTTATAGTTATGGTAATCCTCCTCGTTGA

Protein sequence

MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLDQQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR*

Homology

[Close]

BLAST of MELO3C018001 vs. TrEMBL
Match: A0A0A0KT06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000840 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.0e-53
Identity = 106/113 (93.81%), Postives = 109/113 (96.46%), Query Frame = 1


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60
           MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR 114
            QR ++ELTHSRSVNKVAFGSSTRPSNGFESNFYSY GQVSNRPAY+YGNP R
Sbjct: 61  -QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNPSR 112

[Close]

BLAST of MELO3C018001 vs. TrEMBL
Match: A0A067L7P7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16324 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.8e-18
Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 1


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDE---SSHRRTRSDYQPPTFE 60
           MEGLIPYL HAMKKQKP ++YRS S GSSRSYHLL+   D    SSHRRTRSD+QP   +
Sbjct: 1   MEGLIPYLLHAMKKQKPHNNYRSFSAGSSRSYHLLVGGVDSVSGSSHRRTRSDFQPSNLD 60

Query: 61  FLDQQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSY 109
           F  +QR  + L  +  + + A   +    + F +N+Y++  QV N  + S+
Sbjct: 61  FF-EQRSGENLRSNSLIKRTANSPAVANGSTFGANYYNH--QVKNNTSVSH 108

[Close]

BLAST of MELO3C018001 vs. TrEMBL
Match: B9SNE5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0175590 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.9e-18
Identity = 56/103 (54.37%), Postives = 70/103 (67.96%), Query Frame = 1


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITAN--DESSHRRTRSDYQPPTFEF 60
           MEGLIPYL HA++KQKP++SYRS SVGSSRSYHLL  A+    SSHRRTRS++QPPT E 
Sbjct: 1   MEGLIPYLLHAIRKQKPQNSYRSFSVGSSRSYHLLTGADSFSGSSHRRTRSEFQPPTMEL 60

Query: 61  LDQQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVS 102
           LD QR   E   S S+      +S + ++G +    SY  Q+S
Sbjct: 61  LD-QRQGLEYLRSGSLRNHRQVTSPKAASGSKLGTTSYPQQMS 102

[Close]

BLAST of MELO3C018001 vs. TrEMBL
Match: M5VL03_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013574mg PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-17
Identity = 60/110 (54.55%), Postives = 73/110 (66.36%), Query Frame = 1


Query: 1   MEGLIPYLFHAMKKQKPRHSYR--SQSVGSSRSYHLLITANDE---SSHRRTRSDYQPP- 60
           MEGLIP+LFHA+KKQ+P+H YR  SQS  S+RSYHLL++  D    SSHRRTRS++QPP 
Sbjct: 1   MEGLIPFLFHALKKQRPQHRYRSFSQSNSSNRSYHLLMSGQDSLEGSSHRRTRSEFQPPV 60

Query: 61  -TFEFLDQQRPSQELTHSRSVNKVAFGSSTRPSNGF-ESNFYSYAGQVSN 103
            T  F  +QRP+ E  HSRS+ K   G S  PS     S   SY  Q+SN
Sbjct: 61  STAAFF-EQRPANEFVHSRSL-KEEGGVSAAPSVLIGSSKMGSYPYQISN 108

[Close]

BLAST of MELO3C018001 vs. TrEMBL
Match: A0A061E0G9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_007226 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.3e-16
Identity = 55/105 (52.38%), Postives = 66/105 (62.86%), Query Frame = 1


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDE-----SSHRRTRSDYQPPT 60
           MEGLIP+L HA++KQKP H Y+S SVGSSRSYHLL+  + +     SSHRRTRS++QPPT
Sbjct: 1   MEGLIPFLIHAVRKQKPGHHYKSMSVGSSRSYHLLMGQSQQESVEGSSHRRTRSEFQPPT 60

Query: 61  FEFLDQQRPSQELTHSRSVNKVAFGSSTR-PSNGFESNFYSYAGQ 100
             F  +QR   E    +  N    GSS   PS    SN  SYA Q
Sbjct: 61  VGFF-EQRSGLEFLSPKGYNS---GSSINYPSMAGGSNVGSYAHQ 101

[Close]

BLAST of MELO3C018001 vs. TAIR10
Match: AT3G19615.1 (AT3G19615.1 unknown protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-11
Identity = 42/73 (57.53%), Postives = 42/73 (57.53%), Query Frame = 1


Query: 1  MEGLIPYLFHAMKKQ-KPRHS-YRSQSVGSSRSYHLLITAND------ESSHRRTRSDYQ 60
          MEGLIPYL HA+KK  KP H  YRS SVGSSRSY  L+   D       SSHRRTRSDY 
Sbjct: 1  MEGLIPYLIHAIKKDHKPDHQRYRSISVGSSRSYRPLMMGQDGSSSMQGSSHRRTRSDYN 60

Query: 61 PPTFEFLDQQRPS 66
          P        QR S
Sbjct: 61 PHVIMDKFDQRSS 73

[Close]

BLAST of MELO3C018001 vs. NCBI nr
Match: gi|659108799|ref|XP_008454395.1| (PREDICTED: uncharacterized protein LOC103494810 [Cucumis melo])

HSP 1 Score: 235.3 bits (599), Expect = 5.1e-59
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60
           MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR 114
           QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR
Sbjct: 61  QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR 113

[Close]

BLAST of MELO3C018001 vs. NCBI nr
Match: gi|700197607|gb|KGN52765.1| (hypothetical protein Csa_4G000840 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 1.4e-53
Identity = 106/113 (93.81%), Postives = 109/113 (96.46%), Query Frame = 1


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60
           MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR 114
            QR ++ELTHSRSVNKVAFGSSTRPSNGFESNFYSY GQVSNRPAY+YGNP R
Sbjct: 61  -QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNPSR 112

[Close]

BLAST of MELO3C018001 vs. NCBI nr
Match: gi|643738570|gb|KDP44491.1| (hypothetical protein JCGZ_16324 [Jatropha curcas])

HSP 1 Score: 98.2 bits (243), Expect = 9.8e-18
Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 1


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDE---SSHRRTRSDYQPPTFE 60
           MEGLIPYL HAMKKQKP ++YRS S GSSRSYHLL+   D    SSHRRTRSD+QP   +
Sbjct: 1   MEGLIPYLLHAMKKQKPHNNYRSFSAGSSRSYHLLVGGVDSVSGSSHRRTRSDFQPSNLD 60

Query: 61  FLDQQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSY 109
           F  +QR  + L  +  + + A   +    + F +N+Y++  QV N  + S+
Sbjct: 61  FF-EQRSGENLRSNSLIKRTANSPAVANGSTFGANYYNH--QVKNNTSVSH 108

[Close]

BLAST of MELO3C018001 vs. NCBI nr
Match: gi|802550687|ref|XP_012093116.1| (PREDICTED: probable beta-D-xylosidase 5 isoform X2 [Jatropha curcas])

HSP 1 Score: 98.2 bits (243), Expect = 9.8e-18
Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 1


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDE---SSHRRTRSDYQPPTFE 60
           MEGLIPYL HAMKKQKP ++YRS S GSSRSYHLL+   D    SSHRRTRSD+QP   +
Sbjct: 804 MEGLIPYLLHAMKKQKPHNNYRSFSAGSSRSYHLLVGGVDSVSGSSHRRTRSDFQPSNLD 863

Query: 61  FLDQQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSY 109
           F  +QR  + L  +  + + A   +    + F +N+Y++  QV N  + S+
Sbjct: 864 FF-EQRSGENLRSNSLIKRTANSPAVANGSTFGANYYNH--QVKNNTSVSH 911

[Close]

BLAST of MELO3C018001 vs. NCBI nr
Match: gi|1000949589|ref|XP_015579855.1| (PREDICTED: probable beta-D-xylosidase 5 isoform X2 [Ricinus communis])

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-17
Identity = 56/103 (54.37%), Postives = 70/103 (67.96%), Query Frame = 1


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITAN--DESSHRRTRSDYQPPTFEF 60
           MEGLIPYL HA++KQKP++SYRS SVGSSRSYHLL  A+    SSHRRTRS++QPPT E 
Sbjct: 795 MEGLIPYLLHAIRKQKPQNSYRSFSVGSSRSYHLLTGADSFSGSSHRRTRSEFQPPTMEL 854

Query: 61  LDQQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVS 102
           LD QR   E   S S+      +S + ++G +    SY  Q+S
Sbjct: 855 LD-QRQGLEYLRSGSLRNHRQVTSPKAASGSKLGTTSYPQQMS 896

The following BLAST results are available for this feature:

BLAST of MELO3C018001 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT06_CUCSA	1.0e-53	93.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000840 PE=4 SV=1	[more]
A0A067L7P7_JATCU	6.8e-18	47.75	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16324 PE=4 SV=1	[more]
B9SNE5_RICCO	8.9e-18	54.37	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0175590 PE=4 SV=1	[more]
M5VL03_PRUPE	4.4e-17	54.55	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013574mg PE=4 SV=1	[more]
A0A061E0G9_THECC	8.3e-16	52.38	Uncharacterized protein OS=Theobroma cacao GN=TCM_007226 PE=4 SV=1	[more]

BLAST of MELO3C018001 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19615.1	1.9e-11	57.53	unknown protein	[more]

BLAST of MELO3C018001 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108799\|ref\|XP_008454395.1\|	5.1e-59	100.00	PREDICTED: uncharacterized protein LOC103494810 [Cucumis melo]	[more]
gi\|700197607\|gb\|KGN52765.1\|	1.4e-53	93.81	hypothetical protein Csa_4G000840 [Cucumis sativus]	[more]
gi\|643738570\|gb\|KDP44491.1\|	9.8e-18	47.75	hypothetical protein JCGZ_16324 [Jatropha curcas]	[more]
gi\|802550687\|ref\|XP_012093116.1\|	9.8e-18	47.75	PREDICTED: probable beta-D-xylosidase 5 isoform X2 [Jatropha curcas]	[more]
gi\|1000949589\|ref\|XP_015579855.1\|	1.3e-17	54.37	PREDICTED: probable beta-D-xylosidase 5 isoform X2 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042773	ATP synthesis coupled electron transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004867	serine-type endopeptidase inhibitor activity
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU46247	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018001T1	MELO3C018001T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU46247	MU46247	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38370	FAMILY NOT NAMED	coord: 2..110 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C018001	Csa4G000840	Cucumber (Chinese Long) v2	cumeB312
MELO3C018001	ClCG10G010430	Watermelon (Charleston Gray)	mewcgB453
MELO3C018001	Cla97C10G193340	Watermelon (97103) v2	mewmbB463
MELO3C018001	Bhi11G000949	Wax gourd	mewgoB564
MELO3C018001	CSPI04G00380	Wild cucumber (PI 183967)	cpimeB310
MELO3C018001	CmaCh16G003220	Cucurbita maxima (Rimu)	cmameB303
MELO3C018001	CmoCh16G003400	Cucurbita moschata (Rifu)	cmomeB298
MELO3C018001	Cp4.1LG14g04490	Cucurbita pepo (Zucchini)	cpemeB201
MELO3C018001	Carg19684	Silver-seed gourd	carmeB0297
MELO3C018001	CsaV3_4G000330	Cucumber (Chinese Long) v3	cucmeB315

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018001	Cucumber (Gy14) v2	cgybmeB268
MELO3C018001	Cucumber (Gy14) v2	cgybmeB269
MELO3C018001	Cucumber (Gy14) v2	cgybmeB502
MELO3C018001	Silver-seed gourd	carmeB0383
MELO3C018001	Cucumber (Chinese Long) v3	cucmeB310
MELO3C018001	Cucumber (Chinese Long) v3	cucmeB585
MELO3C018001	Watermelon (97103) v2	mewmbB476
MELO3C018001	Melon (DHL92) v3.5.1	memeB094
MELO3C018001	Melon (DHL92) v3.5.1	memeB154
MELO3C018001	Cucumber (Gy14) v1	cgymeB111
MELO3C018001	Cucumber (Gy14) v1	cgymeB383
MELO3C018001	Cucumber (Gy14) v1	cgymeB569
MELO3C018001	Cucurbita maxima (Rimu)	cmameB700
MELO3C018001	Cucurbita moschata (Rifu)	cmomeB475
MELO3C018001	Cucurbita moschata (Rifu)	cmomeB692
MELO3C018001	Wild cucumber (PI 183967)	cpimeB308
MELO3C018001	Wild cucumber (PI 183967)	cpimeB573
MELO3C018001	Cucumber (Chinese Long) v2	cumeB309
MELO3C018001	Cucumber (Chinese Long) v2	cumeB562
MELO3C018001	Watermelon (Charleston Gray)	mewcgB472
MELO3C018001	Watermelon (97103) v1	mewmB497
MELO3C018001	Watermelon (97103) v1	mewmB537
MELO3C018001	Cucurbita pepo (Zucchini)	cpemeB242
MELO3C018001	Cucurbita pepo (Zucchini)	cpemeB422
MELO3C018001	Bottle gourd (USVL1VR-Ls)	lsimeB268
MELO3C018001	Bottle gourd (USVL1VR-Ls)	lsimeB269