Cp4.1LG14g04490 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG14g04490
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Beta-1,4-xylosidase
Location	Cp4.1LG14 : 1550052 .. 1550330 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGCTTAATTCCTTATCTATTCCATGCAATGAAGAAGCAAAAGCCACGCCATGACTATAGAAGCCAATCAGTAGGTTCGAGCCGAAGCTACCATCTCTTGGCAAACGACGAGTCGTCTCACCGACGAACACGATCGGATTTTCAGCCACCAAGGTTCGAGTACTTGGACCAACGGTCGGGGCACGAGTTAATGCATTCCCGTAGCGTTAGTAAGGGTGCGTTTGGATCATCGTATGCTGGCCAGGTTTCAAATAATGGTAACCCTCCTCGCTAG

mRNA sequence

ATGGAGGGCTTAATTCCTTATCTATTCCATGCAATGAAGAAGCAAAAGCCACGCCATGACTATAGAAGCCAATCAGTAGGTTCGAGCCGAAGCTACCATCTCTTGGCAAACGACGAGTCGTCTCACCGACGAACACGATCGGATTTTCAGCCACCAAGGTTCGAGTACTTGGACCAACGGTCGGGGCACGAGTTAATGCATTCCCGTAGCGTTAGTAAGGGTGCGTTTGGATCATCGTATGCTGGCCAGGTTTCAAATAATGGTAACCCTCCTCGCTAG

Coding sequence (CDS)

ATGGAGGGCTTAATTCCTTATCTATTCCATGCAATGAAGAAGCAAAAGCCACGCCATGACTATAGAAGCCAATCAGTAGGTTCGAGCCGAAGCTACCATCTCTTGGCAAACGACGAGTCGTCTCACCGACGAACACGATCGGATTTTCAGCCACCAAGGTTCGAGTACTTGGACCAACGGTCGGGGCACGAGTTAATGCATTCCCGTAGCGTTAGTAAGGGTGCGTTTGGATCATCGTATGCTGGCCAGGTTTCAAATAATGGTAACCCTCCTCGCTAG

Protein sequence

MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLLANDESSHRRTRSDFQPPRFEYLDQRSGHELMHSRSVSKGAFGSSYAGQVSNNGNPPR

Homology

[Close]

BLAST of Cp4.1LG14g04490 vs. TrEMBL
Match: A0A0A0KT06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000840 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.7e-31
Identity = 80/112 (71.43%), Postives = 83/112 (74.11%), Query Frame = 1


Query: 1   MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLL--ANDESSHRRTRSDFQPPRFEYLD 60
           MEGLIPYLFHAMKKQKPRH YRSQSVGSSRSYHLL  ANDESSHRRTRSD+QPP FE+LD
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  QRSGHELMHSRSVSKGAFGS-------------SYAGQVSNN-----GNPPR 93
           QRS  EL HSRSV+K AFGS             SY GQVSN      GNP R
Sbjct: 61  QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNPSR 112

[Close]

BLAST of Cp4.1LG14g04490 vs. TrEMBL
Match: B9SNE5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0175590 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.9e-17
Identity = 49/75 (65.33%), Postives = 57/75 (76.00%), Query Frame = 1


Query: 1  MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLLANDE----SSHRRTRSDFQPPRFEY 60
          MEGLIPYL HA++KQKP++ YRS SVGSSRSYHLL   +    SSHRRTRS+FQPP  E 
Sbjct: 1  MEGLIPYLLHAIRKQKPQNSYRSFSVGSSRSYHLLTGADSFSGSSHRRTRSEFQPPTMEL 60

Query: 61 LDQRSGHELMHSRSV 72
          LDQR G E + S S+
Sbjct: 61 LDQRQGLEYLRSGSL 75

[Close]

BLAST of Cp4.1LG14g04490 vs. TrEMBL
Match: A0A067L7P7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16324 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-16
Identity = 56/103 (54.37%), Postives = 67/103 (65.05%), Query Frame = 1


Query: 1   MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLLAN-----DESSHRRTRSDFQPPRFE 60
           MEGLIPYL HAMKKQKP ++YRS S GSSRSYHLL         SSHRRTRSDFQP   +
Sbjct: 1   MEGLIPYLLHAMKKQKPHNNYRSFSAGSSRSYHLLVGGVDSVSGSSHRRTRSDFQPSNLD 60

Query: 61  YLDQRSGHEL---------MHSRSVSKGA-FGSSYAG-QVSNN 88
           + +QRSG  L          +S +V+ G+ FG++Y   QV NN
Sbjct: 61  FFEQRSGENLRSNSLIKRTANSPAVANGSTFGANYYNHQVKNN 103

[Close]

BLAST of Cp4.1LG14g04490 vs. TrEMBL
Match: V4U9W4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029615mg PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.8e-16
Identity = 48/70 (68.57%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 1  MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLLANDE----SSHRRTRSDFQPPRFEY 60
          MEGLIPYL HAMKKQKP H YRS SVGSSRSYHLL   +    SSHRR RSDFQ P  E+
Sbjct: 1  MEGLIPYLVHAMKKQKPHHSYRSFSVGSSRSYHLLIGGDSFEGSSHRRARSDFQQPAVEF 60

Query: 61 LDQRSGHELM 67
            QRSG E +
Sbjct: 61 PGQRSGAEFI 70

[Close]

BLAST of Cp4.1LG14g04490 vs. TrEMBL
Match: A0A0D2PMF5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G020500 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-15
Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 1


Query: 1  MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLLANDESSHRRTRSDFQPP-RFEYLDQ 60
          MEGLIPYL HAMKKQKP H+YRS SVGSSRSYHLL  + SSHRRTRS+FQPP   E ++Q
Sbjct: 1  MEGLIPYLIHAMKKQKPGHNYRSTSVGSSRSYHLL--EGSSHRRTRSEFQPPATVEVVEQ 60

Query: 61 RSG 63
          RSG
Sbjct: 61 RSG 61

[Close]

BLAST of Cp4.1LG14g04490 vs. TAIR10
Match: AT3G19615.1 (AT3G19615.1 unknown protein)

HSP 1 Score: 60.5 bits (145), Expect = 6.4e-10
Identity = 45/87 (51.72%), Postives = 52/87 (59.77%), Query Frame = 1


Query: 1  MEGLIPYLFHAMKKQ-KPRH-DYRSQSVGSSRSYHLLANDE--------SSHRRTRSDFQ 60
          MEGLIPYL HA+KK  KP H  YRS SVGSSRSY  L   +        SSHRRTRSD+ 
Sbjct: 1  MEGLIPYLIHAIKKDHKPDHQRYRSISVGSSRSYRPLMMGQDGSSSMQGSSHRRTRSDYN 60

Query: 61 P-PRFEYLDQRS---GHELMHSRSVSK 74
          P    +  DQRS   G E ++  S S+
Sbjct: 61 PHVIMDKFDQRSSGFGQEFVNKDSSSQ 87

[Close]

BLAST of Cp4.1LG14g04490 vs. NCBI nr
Match: gi|700197607|gb|KGN52765.1| (hypothetical protein Csa_4G000840 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-30
Identity = 80/112 (71.43%), Postives = 83/112 (74.11%), Query Frame = 1


Query: 1   MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLL--ANDESSHRRTRSDFQPPRFEYLD 60
           MEGLIPYLFHAMKKQKPRH YRSQSVGSSRSYHLL  ANDESSHRRTRSD+QPP FE+LD
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  QRSGHELMHSRSVSKGAFGS-------------SYAGQVSNN-----GNPPR 93
           QRS  EL HSRSV+K AFGS             SY GQVSN      GNP R
Sbjct: 61  QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNPSR 112

[Close]

BLAST of Cp4.1LG14g04490 vs. NCBI nr
Match: gi|659108799|ref|XP_008454395.1| (PREDICTED: uncharacterized protein LOC103494810 [Cucumis melo])

HSP 1 Score: 139.4 bits (350), Expect = 3.1e-30
Identity = 81/113 (71.68%), Postives = 84/113 (74.34%), Query Frame = 1


Query: 1   MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLL--ANDESSHRRTRSDFQPPRFEYLD 60
           MEGLIPYLFHAMKKQKPRH YRSQSVGSSRSYHLL  ANDESSHRRTRSD+QPP FE+LD
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  -QRSGHELMHSRSVSKGAFGS-------------SYAGQVSNN-----GNPPR 93
            QR   EL HSRSV+K AFGS             SYAGQVSN      GNPPR
Sbjct: 61  QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR 113

[Close]

BLAST of Cp4.1LG14g04490 vs. NCBI nr
Match: gi|1000949589|ref|XP_015579855.1| (PREDICTED: probable beta-D-xylosidase 5 isoform X2 [Ricinus communis])

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 49/75 (65.33%), Postives = 57/75 (76.00%), Query Frame = 1


Query: 1   MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLLANDE----SSHRRTRSDFQPPRFEY 60
           MEGLIPYL HA++KQKP++ YRS SVGSSRSYHLL   +    SSHRRTRS+FQPP  E 
Sbjct: 795 MEGLIPYLLHAIRKQKPQNSYRSFSVGSSRSYHLLTGADSFSGSSHRRTRSEFQPPTMEL 854

Query: 61  LDQRSGHELMHSRSV 72
           LDQR G E + S S+
Sbjct: 855 LDQRQGLEYLRSGSL 869

[Close]

BLAST of Cp4.1LG14g04490 vs. NCBI nr
Match: gi|223533154|gb|EEF34912.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 49/75 (65.33%), Postives = 57/75 (76.00%), Query Frame = 1


Query: 1  MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLLANDE----SSHRRTRSDFQPPRFEY 60
          MEGLIPYL HA++KQKP++ YRS SVGSSRSYHLL   +    SSHRRTRS+FQPP  E 
Sbjct: 1  MEGLIPYLLHAIRKQKPQNSYRSFSVGSSRSYHLLTGADSFSGSSHRRTRSEFQPPTMEL 60

Query: 61 LDQRSGHELMHSRSV 72
          LDQR G E + S S+
Sbjct: 61 LDQRQGLEYLRSGSL 75

[Close]

BLAST of Cp4.1LG14g04490 vs. NCBI nr
Match: gi|643738570|gb|KDP44491.1| (hypothetical protein JCGZ_16324 [Jatropha curcas])

HSP 1 Score: 92.0 bits (227), Expect = 5.7e-16
Identity = 56/103 (54.37%), Postives = 67/103 (65.05%), Query Frame = 1


Query: 1   MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLLAN-----DESSHRRTRSDFQPPRFE 60
           MEGLIPYL HAMKKQKP ++YRS S GSSRSYHLL         SSHRRTRSDFQP   +
Sbjct: 1   MEGLIPYLLHAMKKQKPHNNYRSFSAGSSRSYHLLVGGVDSVSGSSHRRTRSDFQPSNLD 60

Query: 61  YLDQRSGHEL---------MHSRSVSKGA-FGSSYAG-QVSNN 88
           + +QRSG  L          +S +V+ G+ FG++Y   QV NN
Sbjct: 61  FFEQRSGENLRSNSLIKRTANSPAVANGSTFGANYYNHQVKNN 103

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g04490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g04490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT06_CUCSA	9.7e-31	71.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000840 PE=4 SV=1	[more]
B9SNE5_RICCO	7.9e-17	65.33	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0175590 PE=4 SV=1	[more]
A0A067L7P7_JATCU	3.9e-16	54.37	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16324 PE=4 SV=1	[more]
V4U9W4_9ROSI	8.8e-16	68.57	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029615mg PE=4 SV=1	[more]
A0A0D2PMF5_GOSRA	1.1e-15	76.19	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G020500 PE=4 SV=1	[more]

BLAST of Cp4.1LG14g04490 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19615.1	6.4e-10	51.72	unknown protein	[more]

BLAST of Cp4.1LG14g04490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197607\|gb\|KGN52765.1\|	1.4e-30	71.43	hypothetical protein Csa_4G000840 [Cucumis sativus]	[more]
gi\|659108799\|ref\|XP_008454395.1\|	3.1e-30	71.68	PREDICTED: uncharacterized protein LOC103494810 [Cucumis melo]	[more]
gi\|1000949589\|ref\|XP_015579855.1\|	1.1e-16	65.33	PREDICTED: probable beta-D-xylosidase 5 isoform X2 [Ricinus communis]	[more]
gi\|223533154\|gb\|EEF34912.1\|	1.1e-16	65.33	conserved hypothetical protein [Ricinus communis]	[more]
gi\|643738570\|gb\|KDP44491.1\|	5.7e-16	54.37	hypothetical protein JCGZ_16324 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042773	ATP synthesis coupled electron transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004867	serine-type endopeptidase inhibitor activity
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g04490.1	Cp4.1LG14g04490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38370	FAMILY NOT NAMED	coord: 2..66 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG14g04490	CmaCh16G003220	Cucurbita maxima (Rimu)	cmacpeB344
Cp4.1LG14g04490	CmoCh16G003400	Cucurbita moschata (Rifu)	cmocpeB307
Cp4.1LG14g04490	Csa4G000840	Cucumber (Chinese Long) v2	cpecuB219
Cp4.1LG14g04490	MELO3C018001	Melon (DHL92) v3.5.1	cpemeB201
Cp4.1LG14g04490	ClCG10G010430	Watermelon (Charleston Gray)	cpewcgB190
Cp4.1LG14g04490	CSPI04G00380	Wild cucumber (PI 183967)	cpecpiB221
Cp4.1LG14g04490	MELO3C018001.2	Melon (DHL92) v3.6.1	cpemedB243
Cp4.1LG14g04490	CsaV3_4G000330	Cucumber (Chinese Long) v3	cpecucB0263
Cp4.1LG14g04490	Bhi11G000949	Wax gourd	cpewgoB0266
Cp4.1LG14g04490	Carg19684	Silver-seed gourd	carcpeB0407

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG14g04490	Cucurbita pepo (Zucchini)	cpecpeB234
Cp4.1LG14g04490	Cucumber (Gy14) v1	cgycpeB0188
Cp4.1LG14g04490	Cucumber (Gy14) v1	cgycpeB0215
Cp4.1LG14g04490	Cucurbita maxima (Rimu)	cmacpeB114
Cp4.1LG14g04490	Cucurbita maxima (Rimu)	cmacpeB715
Cp4.1LG14g04490	Cucurbita moschata (Rifu)	cmocpeB092
Cp4.1LG14g04490	Cucurbita moschata (Rifu)	cmocpeB668
Cp4.1LG14g04490	Cucumber (Chinese Long) v2	cpecuB229
Cp4.1LG14g04490	Bottle gourd (USVL1VR-Ls)	cpelsiB168
Cp4.1LG14g04490	Watermelon (97103) v1	cpewmB204
Cp4.1LG14g04490	Melon (DHL92) v3.5.1	cpemeB200
Cp4.1LG14g04490	Melon (DHL92) v3.5.1	cpemeB182
Cp4.1LG14g04490	Melon (DHL92) v3.5.1	cpemeB208
Cp4.1LG14g04490	Cucumber (Gy14) v2	cgybcpeB485
Cp4.1LG14g04490	Cucumber (Gy14) v2	cgybcpeB492
Cp4.1LG14g04490	Cucumber (Gy14) v2	cgybcpeB747
Cp4.1LG14g04490	Melon (DHL92) v3.6.1	cpemedB220
Cp4.1LG14g04490	Melon (DHL92) v3.6.1	cpemedB242
Cp4.1LG14g04490	Melon (DHL92) v3.6.1	cpemedB250
Cp4.1LG14g04490	Silver-seed gourd	carcpeB0523
Cp4.1LG14g04490	Cucumber (Chinese Long) v3	cpecucB0245
Cp4.1LG14g04490	Cucumber (Chinese Long) v3	cpecucB0269
Cp4.1LG14g04490	Cucumber (Chinese Long) v3	cpecucB0283
Cp4.1LG14g04490	Wax gourd	cpewgoB0304