MELO3C017067 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C017067
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionChlorophyll A-B binding family protein
Locationchr7 : 146993 .. 159278 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCTAATTCAGCCACACACTCCAGCTTCTTCAATTTCATCTTCATCCGCCTCATTCTACGGAACGTATCTTCAACAGCTCCGTCCGCTCACCACAACCCTTAATCTTCGAAGCAACCACTCTATCTCTCATCGTTCCACTTGCAGAGCTTCCTGGCAGGAGGTTTGTAAGAAAGCAAGCTACCTGTATCCAGCTCTTACTCTTCATTTCTGACTCCTTCTTTTCATCTTGCTTTAGCTTGCAGGTGTTCTGATCTTCTCTGCAGTTCCTTTCACGGCGGTTAAAGCCATTGCCAATAGCCCGCTTGGAGAGTCGCTCCAGAGACAATTGGAAAAGAAGAAAAAATCTGCCGTAGCCAACTCTTCCAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAAAAGATAGGTAA

mRNA sequence

ATGGCGCTAATTCAGCCACACACTCCAGCTTCTTCAATTTCATCTTCATCCGCCTCATTCTACGGAACGTATCTTCAACAGCTCCGTCCGCTCACCACAACCCTTAATCTTCGAAGCAACCACTCTATCTCTCATCGTTCCACTTGCAGAGCTTCCTGGCAGGAGCTTGCAGGTGTTCTGATCTTCTCTGCAGTTCCTTTCACGGCGGTTAAAGCCATTGCCAATAGCCCGCTTGGAGAGTCGCTCCAGAGACAATTGGAAAAGAAGAAAAAATCTGCCGTAGCCAACTCTTCCAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAAAAGATAGGTAA

Coding sequence (CDS)

ATGGCGCTAATTCAGCCACACACTCCAGCTTCTTCAATTTCATCTTCATCCGCCTCATTCTACGGAACGTATCTTCAACAGCTCCGTCCGCTCACCACAACCCTTAATCTTCGAAGCAACCACTCTATCTCTCATCGTTCCACTTGCAGAGCTTCCTGGCAGGAGCTTGCAGGTGTTCTGATCTTCTCTGCAGTTCCTTTCACGGCGGTTAAAGCCATTGCCAATAGCCCGCTTGGAGAGTCGCTCCAGAGACAATTGGAAAAGAAGAAAAAATCTGCCGTAGCCAACTCTTCCAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAAAAGATAGGTAA

Protein sequence

MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDR*
Homology
[Close]
BLAST of MELO3C017067 vs. Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.5e-29
Identity = 67/155 (43.23%), Postives = 90/155 (58.06%), Query Frame = 1 

Query: 90  SLQRQLEKKKKSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPYDYPKYLTGELPGD 149
           +L  ++E  KK+A    +K  A A+ A  +  WYG +R +WLGP   + P YLTGE PGD
Sbjct: 10  ALTVKVEAAKKAAGTKQTK-AAPAKSAGIE--WYGPDRAKWLGPFSTNTPAYLTGEFPGD 69

Query: 150 YGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGY 209
           YG+D AGLS DP  F+KY   E++HARWA+L +LG L PE+L  +    F EP+W++ G 
Sbjct: 70  YGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGA 129

Query: 210 SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILM 245
                  LDYLG P   L  +Q ++     Q +LM
Sbjct: 130 QIFSEGGLDYLGSPA--LIHAQNIVATLAVQVVLM 159

[Close]
BLAST of MELO3C017067 vs. Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_124625 PE=3 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 6.2e-28
Identity = 66/160 (41.25%), Postives = 92/160 (57.50%), Query Frame = 1 

Query: 88  GESLQR---QLEKKKKSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPYDYPKYLTG 147
           G+SL +   +L +K  +  A  +  + +++ A  DS WYG +RP++LGP   + P YL G
Sbjct: 14  GQSLVKPVNELSRKVGNVEARVTMRRTVSKSAGSDSIWYGADRPKFLGPFSGETPSYLNG 73

Query: 148 ELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIW 207
           E  GDYG+D AGLS DP  F +    E++HARWAML +LG L PE+L   G   F E +W
Sbjct: 74  EFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVW 133

Query: 208 WRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILM 245
           ++ G        LDYLG P   L  +Q ++ I  CQ +LM
Sbjct: 134 FKAGAQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVLM 170

[Close]
BLAST of MELO3C017067 vs. Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.1e-27
Identity = 62/135 (45.93%), Postives = 79/135 (58.52%), Query Frame = 1 

Query: 110 KALAEEARKDSSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFN 169
           KA+A+ A   S WYG +R ++LGP   + P YLTGE PGDYG+D AGLS DP  F K   
Sbjct: 37  KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96

Query: 170 FEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAG 229
            E++H RWAML +LG + PE+L   G   F E +W++ G        LDYLG P   L  
Sbjct: 97  LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVH 156

Query: 230 SQGVIVIAICQAILM 245
           +Q ++ I  CQ +LM
Sbjct: 157 AQSILAIWACQVVLM 168

[Close]
BLAST of MELO3C017067 vs. Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.2e-27
Identity = 60/125 (48.00%), Postives = 75/125 (60.00%), Query Frame = 1 

Query: 120 SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAM 179
           S WYGE+RP++LGP     P YLTGE PGDYG+D AGLS DP  F +    E++H RWAM
Sbjct: 47  SIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAM 106

Query: 180 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 239
           L +LG + PEIL   G   F E +W++ G        LDYLG P  +L  +Q ++ I  C
Sbjct: 107 LGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWAC 166

Query: 240 QAILM 245
           Q +LM
Sbjct: 167 QVVLM 168

[Close]
BLAST of MELO3C017067 vs. Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-26
Identity = 67/169 (39.64%), Postives = 91/169 (53.85%), Query Frame = 1 

Query: 77  TAVKAIANSPLGESLQRQLEKKKKSAVANSS-KFKALAEEARKDSSWYGEERPRWLGPLP 136
           T+  A+ ++  G+ L+   E  +K     +  +  A   +A   S WYG +RP +LGP  
Sbjct: 3   TSTAALTSTFSGQQLKPVNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGPFS 62

Query: 137 YDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALVPEILDIFG 196
              P YL+GE PGDYG+D AGLS DP  F K    E++H+RWAML +LG + PE+L   G
Sbjct: 63  GSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNG 122

Query: 197 AFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILM 245
              F E +W++ G        LDYLG P   L  +Q ++ I  CQ ILM
Sbjct: 123 V-KFGEAVWFKAGSQIFAEGGLDYLGNPS--LVHAQSILAIWACQVILM 168

[Close]
BLAST of MELO3C017067 vs. TrEMBL
Match: D7UDH1_VITVI (Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_18s0122g00430 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 6.1e-99
Identity = 180/244 (73.77%), Postives = 205/244 (84.02%), Query Frame = 1 

Query: 10  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 69
           MAL QP     S+SSSS+SF+G Y  +L    +    R+ +S S  S C+ASWQELAGVL
Sbjct: 1   MALRQP----CSVSSSSSSFFGGYRHRLCSKISWPKSRNVNSTSTYSGCKASWQELAGVL 60

Query: 70  IFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDSSWYGEERPR 129
           IFSA+PFTAVKAIANSPLGESLQ ++E+ KK+AV NSSKFKALAE+A+ +S WYGEERPR
Sbjct: 61  IFSAIPFTAVKAIANSPLGESLQSRMEENKKAAVKNSSKFKALAEKAKNESLWYGEERPR 120

Query: 130 WLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALVPE 189
           WLGP+PYDYP YLTGELPGDYGFDIAGL +DPVAFQKYFNFEILHARWAMLA+LGAL+PE
Sbjct: 121 WLGPIPYDYPAYLTGELPGDYGFDIAGLGKDPVAFQKYFNFEILHARWAMLAALGALLPE 180

Query: 190 ILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMDGRRA 249
           +LD+ GAFHF EP+WWRVGYSKLKGDTLDYLGIPG H AGSQGVIVIAICQA+LM G   
Sbjct: 181 LLDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGFHFAGSQGVIVIAICQALLMVGPEY 240

Query: 250 TSHC 254
             +C
Sbjct: 241 ARYC 240

[Close]
BLAST of MELO3C017067 vs. TrEMBL
Match: D7UDH1_VITVI (Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_18s0122g00430 PE=3 SV=1)

HSP 1 Score: 36.2 bits (82), Expect = 7.1e+01
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 1 

Query: 141 YLTGEL--PGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLG 185
           YL G++  PG   FD   LS+DPVAF++    EI + R AM+A LG
Sbjct: 251 YLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLG 296


HSP 2 Score: 355.1 bits (910), Expect = 6.9e-95
Identity = 172/252 (68.25%), Postives = 203/252 (80.56%), Query Frame = 1 

Query: 2   IIPSPEIVMALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRAS 61
           ++PSP      + P +P+SS + +S       L++L         R        S C+AS
Sbjct: 3   MLPSP------VSPSSPSSSFALASP------LRRLPARPAPPRRRRRRLPKSASVCKAS 62

Query: 62  WQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDSS 121
           WQELAGVL+FSA+PFTAVKAIANSPLGESLQR++E++KK AV NSS+F+ALAE+ARK+SS
Sbjct: 63  WQELAGVLVFSAIPFTAVKAIANSPLGESLQRRMEERKKFAVENSSRFRALAEKARKESS 122

Query: 122 WYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLA 181
           WYGE+RP+WLGP+PYDYP YLTGE PGDYGFDIAGL+ DP AF+KYFNFEILHARWAMLA
Sbjct: 123 WYGEDRPQWLGPIPYDYPAYLTGEYPGDYGFDIAGLARDPTAFEKYFNFEILHARWAMLA 182

Query: 182 SLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQA 241
           +LGALVPE+LD+ GAFHF EP+WWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQA
Sbjct: 183 ALGALVPEVLDMVGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQA 242

Query: 242 ILMDGRRATSHC 254
           +LM G     +C
Sbjct: 243 LLMVGPEYARYC 242

[Close]
BLAST of MELO3C017067 vs. TrEMBL
Match: A0A067KWW2_JATCU (Chlorophyll a-b binding protein, chloroplastic OS=Jatropha curcas GN=JCGZ_08016 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.2e-94
Identity = 173/243 (71.19%), Postives = 202/243 (83.13%), Query Frame = 1 

Query: 13  IQPHTPASS--ISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVLI 72
           + P    SS  +SSSS+SF+    + L P    + L+   S S    C+ASWQELAGVL+
Sbjct: 5   LHPQASVSSPLLSSSSSSFFVQGSKPLAPKPRKILLKRIAS-SSTPPCKASWQELAGVLV 64

Query: 73  FSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDSSWYGEERPRW 132
           FSA+PFTAVKAIANSPLGESLQR++E++KK A+  SSK +ALA +ARK+S WYGEERP W
Sbjct: 65  FSAIPFTAVKAIANSPLGESLQRRMEERKKVAIQESSKLQALAAKARKESLWYGEERPHW 124

Query: 133 LGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALVPEI 192
           LGP+PYDYP+YLTGELPGDYGFD+AGLS+DPVAFQ+YFNFEILHARWAMLA+LGALVPE+
Sbjct: 125 LGPIPYDYPQYLTGELPGDYGFDVAGLSKDPVAFQRYFNFEILHARWAMLAALGALVPEL 184

Query: 193 LDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMDGRRAT 252
           LD+ GAFHF EP+WWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQA+LM G    
Sbjct: 185 LDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQALLMVGPEYA 244

Query: 253 SHC 254
            +C
Sbjct: 245 RYC 246

[Close]
BLAST of MELO3C017067 vs. TrEMBL
Match: B9H5X9_POPTR (Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa GN=POPTR_0005s28000g PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.5e-94
Identity = 170/246 (69.11%), Postives = 202/246 (82.11%), Query Frame = 1 

Query: 8   IVMALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAG 67
           + +A++ PH    S S+SS+SF+         L+ + +  SN +    S C+ASWQELAG
Sbjct: 5   LAVAVVHPHV---SFSASSSSFFAHQRVPRILLSKSRSNSSNSTSLPASICKASWQELAG 64

Query: 68  VLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDSSWYGEER 127
           V+IFSA+PFTAVKAIANSPLGESLQR+LE++KK AV  SSKFKALA++ARK+S WYGEER
Sbjct: 65  VVIFSAIPFTAVKAIANSPLGESLQRRLEERKKLAVQQSSKFKALAQKARKESFWYGEER 124

Query: 128 PRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALV 187
           PRWLGP+ Y YP YL+GELPGDYGFD+AGL+EDPVAFQ+YFNFEILHARWAMLA+LGAL+
Sbjct: 125 PRWLGPISYQYPTYLSGELPGDYGFDVAGLAEDPVAFQRYFNFEILHARWAMLAALGALI 184

Query: 188 PEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMDGR 247
           PE+LD+ GAFHF EP+WWRVGYSKLKGDTLDYLGIPGLH AG QGV+VIA CQAILM G 
Sbjct: 185 PEVLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGGQGVLVIAFCQAILMVGP 244

Query: 248 RATSHC 254
               +C
Sbjct: 245 EYARYC 247

[Close]
BLAST of MELO3C017067 vs. TrEMBL
Match: B9H5X9_POPTR (Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa GN=POPTR_0005s28000g PE=3 SV=1)

HSP 1 Score: 35.8 bits (81), Expect = 9.3e+01
Identity = 22/53 (41.51%), Postives = 31/53 (58.49%), Query Frame = 1 

Query: 141 YLTGEL--PGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALVPEIL 192
           YL G++  PG   FD   LS+DPV+F++    EI + R AM+A LG  +   L
Sbjct: 258 YLPGDINYPGGILFDPLNLSKDPVSFEELKVKEIKNGRLAMVAWLGFYIQAAL 310


HSP 2 Score: 352.1 bits (902), Expect = 5.9e-94
Identity = 171/244 (70.08%), Postives = 195/244 (79.92%), Query Frame = 1 

Query: 10  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 69
           MAL+QP     S+SS     +   L+    LT T            S C+ASWQEL GV+
Sbjct: 1   MALLQPRASPCSVSSFIHHPHSLALKSPTNLTFTK--------PRSSVCKASWQELVGVV 60

Query: 70  IFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDSSWYGEERPR 129
           +FSA+PFTAVKAIANS +GESLQR+LE++KK AV NSS+F+ LAE+ARK S WYGEERPR
Sbjct: 61  VFSAIPFTAVKAIANSAVGESLQRRLEERKKVAVENSSRFRGLAEKARKQSLWYGEERPR 120

Query: 130 WLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALVPE 189
           WLGP+PYDYP YLTGELPGDYGFD+ GLS DPVAFQKYFNFEILHARWAMLA+LGAL+PE
Sbjct: 121 WLGPIPYDYPAYLTGELPGDYGFDVVGLSRDPVAFQKYFNFEILHARWAMLAALGALIPE 180

Query: 190 ILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMDGRRA 249
           ILD+ GAFHF EP+WWRVGYSKLKGDTLDYLGIPGLH+AGSQGVIVIAICQA+LM G   
Sbjct: 181 ILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGLHVAGSQGVIVIAICQALLMVGPEY 236

Query: 250 TSHC 254
             +C
Sbjct: 241 ARYC 236

[Close]
BLAST of MELO3C017067 vs. TAIR10
Match: AT1G76570.1 (AT1G76570.1 Chlorophyll A-B binding family protein)

HSP 1 Score: 331.3 bits (848), Expect = 5.4e-91
Identity = 162/245 (66.12%), Postives = 191/245 (77.96%), Query Frame = 1 

Query: 10  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISH-RSTCRASWQELAGV 69
           MAL Q     SS+SSS +S +        P       R+  +++  RS CRASWQELAGV
Sbjct: 1   MALFQEKL--SSLSSSYSSIHSL------PRILVSKPRNRIAVTKSRSICRASWQELAGV 60

Query: 70  LIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDSSWYGEERP 129
           L+FSA+PFTAVKAIANS +G SL+R+LE+KKK AV NSS+FK+ A+EAR DS WYG+ERP
Sbjct: 61  LVFSAIPFTAVKAIANSSIGVSLRRRLEEKKKEAVENSSRFKSKAQEARNDSKWYGKERP 120

Query: 130 RWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALVP 189
           RW GP+PYDYP YLTGELPGDYGFDIAGL +D + F KYFNFEILHARWAMLA+LGAL+P
Sbjct: 121 RWFGPIPYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIP 180

Query: 190 EILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMDGRR 249
           E+ D+ G FHF EP+WWRVGYSKL+G+TL+YLGIPGLH+AGSQGVIVIAICQ +LM G  
Sbjct: 181 EVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAICQVLLMVGPE 237

Query: 250 ATSHC 254
              +C
Sbjct: 241 YARYC 237


HSP 2 Score: 37.0 bits (84), Expect = 2.1e-02
Identity = 23/46 (50.00%), Postives = 26/46 (56.52%), Query Frame = 1 

Query: 141 YLTGEL--PGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLG 185
           YL G++  PG   FD   LSEDPVAF+     EI + R AM+A LG
Sbjct: 248 YLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLG 293

[Close]
BLAST of MELO3C017067 vs. TAIR10
Match: AT3G27690.1 (AT3G27690.1 photosystem II light harvesting complex gene 2.3)

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-27
Identity = 60/125 (48.00%), Postives = 75/125 (60.00%), Query Frame = 1 

Query: 120 SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAM 179
           S WYG +RP++LGP   + P YLTGE PGDYG+D AGLS DP  F K    E++H+RWAM
Sbjct: 48  SIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 107

Query: 180 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 239
           L +LG   PEIL   G   F E +W++ G        LDYLG P  +L  +Q ++ I  C
Sbjct: 108 LGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAC 167

Query: 240 QAILM 245
           Q +LM
Sbjct: 168 QVVLM 169

[Close]
BLAST of MELO3C017067 vs. TAIR10
Match: AT5G54270.1 (AT5G54270.1 light-harvesting chlorophyll B-binding protein 3)

HSP 1 Score: 118.2 bits (295), Expect = 7.2e-27
Identity = 56/123 (45.53%), Postives = 72/123 (58.54%), Query Frame = 1 

Query: 122 WYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLA 181
           WYG +R ++LGP     P YLTGE PGDYG+D AGLS DP AF K    E++H RWAML 
Sbjct: 47  WYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLG 106

Query: 182 SLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQA 241
           + G + PE+L  +    F EP+W++ G        LDYLG P  +L  +Q ++ +   Q 
Sbjct: 107 AFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAVLGFQV 166

Query: 242 ILM 245
           ILM
Sbjct: 167 ILM 167

[Close]
BLAST of MELO3C017067 vs. TAIR10
Match: AT2G05070.1 (AT2G05070.1 photosystem II light harvesting complex gene 2.2)

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-26
Identity = 59/125 (47.20%), Postives = 74/125 (59.20%), Query Frame = 1 

Query: 120 SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAM 179
           S WYG +RP++LGP   + P YLTGE PGDYG+D AGLS DP  F K    E++H+RWAM
Sbjct: 47  SIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106

Query: 180 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 239
           L +LG   PEIL   G   F E +W++ G        LDYLG P  +L  +Q ++ I   
Sbjct: 107 LGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAV 166

Query: 240 QAILM 245
           Q +LM
Sbjct: 167 QVVLM 168

[Close]
BLAST of MELO3C017067 vs. TAIR10
Match: AT2G05100.1 (AT2G05100.1 photosystem II light harvesting complex gene 2.1)

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-26
Identity = 59/125 (47.20%), Postives = 74/125 (59.20%), Query Frame = 1 

Query: 120 SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAM 179
           S WYG +RP++LGP   + P YLTGE PGDYG+D AGLS DP  F K    E++H+RWAM
Sbjct: 47  SIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106

Query: 180 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 239
           L +LG   PEIL   G   F E +W++ G        LDYLG P  +L  +Q ++ I   
Sbjct: 107 LGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAV 166

Query: 240 QAILM 245
           Q +LM
Sbjct: 167 QVVLM 168

[Close]
BLAST of MELO3C017067 vs. NCBI nr
Match: gi|659105217|ref|XP_008453035.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic isoform X4 [Cucumis melo])

HSP 1 Score: 518.5 bits (1334), Expect = 6.8e-144
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 1 

Query: 1   MIIPSPEIVMALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRA 60
           MIIPSPEIVMALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRA
Sbjct: 1   MIIPSPEIVMALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRA 60

Query: 61  SWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDS 120
           SWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDS
Sbjct: 61  SWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDS 120

Query: 121 SWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAML 180
           SWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAML
Sbjct: 121 SWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAML 180

Query: 181 ASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQ 240
           ASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQ
Sbjct: 181 ASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQ 240

Query: 241 AILMDGRRATSHCNN 256
           AILMDGRRATSHCNN
Sbjct: 241 AILMDGRRATSHCNN 255

[Close]
BLAST of MELO3C017067 vs. NCBI nr
Match: gi|659105211|ref|XP_008453032.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo])

HSP 1 Score: 497.3 bits (1279), Expect = 1.6e-137
Identity = 246/253 (97.23%), Postives = 247/253 (97.63%), Query Frame = 1 

Query: 1   MIIPSPEIVMALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRA 60
           MIIPSPEIVMALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRA
Sbjct: 1   MIIPSPEIVMALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRA 60

Query: 61  SWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDS 120
           SWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDS
Sbjct: 61  SWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDS 120

Query: 121 SWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAML 180
           SWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAML
Sbjct: 121 SWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAML 180

Query: 181 ASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQ 240
           ASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQ
Sbjct: 181 ASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQ 240

Query: 241 AILMDGRRATSHC 254
           AILM G     +C
Sbjct: 241 AILMVGPEYARYC 253

[Close]
BLAST of MELO3C017067 vs. NCBI nr
Match: gi|659105215|ref|XP_008453034.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic isoform X3 [Cucumis melo])

HSP 1 Score: 493.8 bits (1270), Expect = 1.8e-136
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 1 

Query: 1   MIIPSPEIVMALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRA 60
           MIIPSPEIVMALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRA
Sbjct: 1   MIIPSPEIVMALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRA 60

Query: 61  SWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDS 120
           SWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDS
Sbjct: 61  SWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDS 120

Query: 121 SWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAML 180
           SWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAML
Sbjct: 121 SWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAML 180

Query: 181 ASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQ 240
           ASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQ
Sbjct: 181 ASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQ 240

Query: 241 AILM 245
           AILM
Sbjct: 241 AILM 244

[Close]
BLAST of MELO3C017067 vs. NCBI nr
Match: gi|449455655|ref|XP_004145567.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 468.0 bits (1203), Expect = 1.1e-128
Identity = 229/244 (93.85%), Postives = 234/244 (95.90%), Query Frame = 1 

Query: 10  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 69
           MAL+QPHTPASSISSSSAS +GTYLQQ RPLTTTLNLRSNHSISHRSTCRASWQELAGVL
Sbjct: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60

Query: 70  IFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDSSWYGEERPR 129
           IFSA+PFTAVKAIANSPLG SLQRQLEKKK SAVANSSKFKALAEEARKDSSWYGEERPR
Sbjct: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDSSWYGEERPR 120

Query: 130 WLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALVPE 189
           WLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQK+FNFEILHARWAMLASLGALVPE
Sbjct: 121 WLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPE 180

Query: 190 ILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMDGRRA 249
           ILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILM G   
Sbjct: 181 ILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEY 240

Query: 250 TSHC 254
             +C
Sbjct: 241 ARYC 244

[Close]
BLAST of MELO3C017067 vs. NCBI nr
Match: gi|778697304|ref|XP_011654293.1| (PREDICTED: chlorophyll a-b binding protein, chloroplastic isoform X3 [Cucumis sativus])

HSP 1 Score: 464.5 bits (1194), Expect = 1.2e-127
Identity = 227/235 (96.60%), Postives = 231/235 (98.30%), Query Frame = 1 

Query: 10  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 69
           MAL+QPHTPASSISSSSAS +GTYLQQ RPLTTTLNLRSNHSISHRSTCRASWQELAGVL
Sbjct: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60

Query: 70  IFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDSSWYGEERPR 129
           IFSA+PFTAVKAIANSPLG SLQRQLEKKK SAVANSSKFKALAEEARKDSSWYGEERPR
Sbjct: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDSSWYGEERPR 120

Query: 130 WLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALVPE 189
           WLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQK+FNFEILHARWAMLASLGALVPE
Sbjct: 121 WLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPE 180

Query: 190 ILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILM 245
           ILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILM
Sbjct: 181 ILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILM 235

The following BLAST results are available for this feature:
BLAST of MELO3C017067 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CB2_CHLMO1.5e-2943.23Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas ... [more]
CB2_PHYPA6.2e-2841.25Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens subsp. p... [more]
CB2B_SOLLC3.1e-2745.93Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB... [more]
CB24_SOLLC5.2e-2748.00Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4... [more]
CB23_POLMU1.5e-2639.64Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum m... [more]
BLAST of MELO3C017067 vs. TrEMBL
Match NameE-valueIdentityDescription
D7UDH1_VITVI6.1e-9973.77Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_18s0122g... [more]
D7UDH1_VITVI7.1e+0147.83Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_18s0122g... [more]
A0A067KWW2_JATCU1.2e-9471.19Chlorophyll a-b binding protein, chloroplastic OS=Jatropha curcas GN=JCGZ_08016 ... [more]
B9H5X9_POPTR1.5e-9469.11Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa GN=POPTR_0... [more]
B9H5X9_POPTR9.3e+0141.51Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa GN=POPTR_0... [more]
BLAST of MELO3C017067 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G76570.15.4e-9166.12 Chlorophyll A-B binding family protein[more]
AT3G27690.11.1e-2748.00 photosystem II light harvesting complex gene 2.3[more]
AT5G54270.17.2e-2745.53 light-harvesting chlorophyll B-binding protein 3[more]
AT2G05070.11.6e-2647.20 photosystem II light harvesting complex gene 2.2[more]
AT2G05100.11.6e-2647.20 photosystem II light harvesting complex gene 2.1[more]
BLAST of MELO3C017067 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659105217|ref|XP_008453035.1|6.8e-144100.00PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic isofor... [more]
gi|659105211|ref|XP_008453032.1|1.6e-13797.23PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis m... [more]
gi|659105215|ref|XP_008453034.1|1.8e-136100.00PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic isofor... [more]
gi|449455655|ref|XP_004145567.1|1.1e-12893.85PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X1 [Cucu... [more]
gi|778697304|ref|XP_011654293.1|1.2e-12796.60PREDICTED: chlorophyll a-b binding protein, chloroplastic isoform X3 [Cucumis sa... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom_sf
IPR001344Chloro_AB-bd_pln
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom_sf
IPR001344Chloro_AB-bd_pln
Vocabulary: Biological Process
TermDefinition
GO:0009765photosynthesis, light harvesting
GO:0009765photosynthesis, light harvesting
GO:0009765photosynthesis, light harvesting
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
GO:0016020membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015996 chlorophyll catabolic process
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
biological_process GO:0008150 biological_process
biological_process GO:0009416 response to light stimulus
biological_process GO:0009768 photosynthesis, light harvesting in photosystem I
biological_process GO:0044710 single-organism metabolic process
biological_process GO:0044763 single-organism cellular process
biological_process GO:0009765 photosynthesis, light harvesting
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0010287 plastoglobule
cellular_component GO:0005575 cellular_component
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0031409 pigment binding
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU49275melon EST collection version 4.0transcribed_cluster
MU53922melon EST collection version 4.0transcribed_cluster
MU59420melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C017067T2MELO3C017067T2mRNA
MELO3C017067T3MELO3C017067T3mRNA
MELO3C017067T1MELO3C017067T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU59420MU59420transcribed_cluster
MU53922MU53922transcribed_cluster
MU49275MU49275transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 53..110
score: 4.2
NoneNo IPR availablePANTHERPTHR21649:SF24CHLOROPHYLL A-B BINDING FAMILY PROTEINcoord: 53..110
score: 4.2