CmaCh09G000120 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G000120
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Chlorophyll a-b binding protein 4, chloroplastic
Location	Cma_Chr09 : 81081 .. 86559 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGACCAAAAAAAACATCTGATGTTTAAACGCGCCATAAAAGTGCGTTATAGCTCAGTGATGACTCTAATAGCATAGATGGTAATGGCGCTATTTCATCCACACACTTCGCCTTCTGCAGTTTCATCTTCCTCCGCCTCATTCTATGGGAGTTCTCTTCAACAACTCCGTTCGCGCACCATAGCCCTCAATCTTCGAAACAGCCCCTCCATCCCTCATCGTTTCACTTGCACAGCTTCATGGCAGGAGGTTTGTAAGAAAACAAGCTAGCTGTTTCCATTTTTCGCTGATTGCTGAGTCTTTTTTATTTTCTTCATCATGCTTTAGCTTGCGGGGATTTTGATATTCTCCGCAATTCCTTTCACGGCCGTGAAAGCCATCGCCAATAGCCCATTCGGAGAGTCGCTCCAGAGGCAATTGGAAAAGAAAAAAAATGCTGCGGTCGCCAAGTCTTCGAAGTTCAAGGCTCTTGCTGAGCAGGCTAGAAAAGATAGGTAATCGGGTAAGCTTATTTATTGATGCACGCGTGATTTGGTGACGCCAACGCCAAGTTGGTCTACTCGTATTTTTAGAATAATTACATACACGTTGAATTAAAGTGTATTTAGAACCCATAGAACTTCATGCATTGTGGTGTTATCAGTCATGTTCAAAGTGAGTAGATTGTGATCAAGACAGTGATTCTTAAAGAAGACGTAGAAACCAAAGGGTTCATGGTTAAAACTTATTGGAATCGTTTGGAACCTGGAATATCTTTAAGCTCAAACAGTTGAGCTTCACATTGCCATAAAGTACACAAACTAGCGTCTCTTCTGGGCAAAGCAATCGAGGCATTATCAACTGGTTTCATTGTCATGGATACTTGTTCTGTTGGAACGATATGACTAGTAGCGGCAGAGGCAAGTATCCAATATTTCTTTGAATTAAGCAATAAATTTGTAGCAACGAAATAACAAGTACCTGAAACATGAACTTGGGCACTTTAACCCCTGTTGCACCATTCTTTATCAACTAGCTGACAATTAAACTTAGTGATTCATTGCTGGCAATGTGTTTGGATTAAGAAACTGGATATTGCTCCCATAATTGCTCTGGCCTGAAGATAGTAGTCCGTCACAGCCTCCTCCATCCCCACCCCATTCTGCCCAGGCCTCGACCATAGCCTTCAGATATTCTCCTATTTGCATCATTCTCTCCATTCATCTTTCTTGCTCTCCTCTAATCCTTGTGCTAAATCTATGTTTCATTGCTGCCACCATTGGTCTTCGATATGCTAGATTAAAGATATCTGATTCATCTAAAAGGTTTTCTCACAAATTTTCTCAGAATTTACGGCTAGTATACCAACTTTTATTATTATGATGAAAGTGCCATACAACAAAGTATTAATATATCCAAATGTCTAGCTAAGTCGTAACAGAACGAGGTACTTGACTTGGACCAAGTAAAACAAACTAACAACATTTAGTTACTAAAAAGTAAAAATGTTTGCTACTGTATTCGGTTGCCAAGGAAACTTGTAAGATATTTAAATCTTTTGGCTATCATGACTTGAACTCATTTCCTTTAAATTCCTTTTTTTATTTATATTGGTTTCTATTGACTACCAGGCCAGTTCCTGGTGGAATGTATGCCACATAAATGTTCTTCTAGTTAAGTTATGGTGAATATTCCATTTCAAATTTTGGATATCTATTTAATTTTTGAAGTTTCATTGGGCCAGTAGTATTTCTTAAATATTTATTTCATTTTAATTTCTTTTTAGATTTCCTACGTTCCTCTTGAATTTTCCATCATTTTTATGTATCCTGGTTCCGGACATAAATAATATGTAACGTTCGCTAAAGAATCAACAAATTATGTCCAACTAATAATTTTGAAGGAATGACATGGACATTTTTTAAAAAGGGTTTCAAATTTTCATGCTATTAAAGGATTTCGGGAATTTGCTATCTTTATTTCATGTAGATTATTCTCTAGTATCTTTCATGCTTTGCAAATCTTCTTCATTCTTGAAATAGATTACATGGCTGCGATCTTTTGCTTGTACTAATTTACATTGGATTGGATGTGATCTTATGAATTATTGTTTATCCAACTATGAATGTTTTGACTGCCAGAAAACATATAAACGAATGGTACAATTGAATCAAATTGCATCGTGTTGTAAATACTATTCTATTGGTGAATAATTGCAGCTCGTGGTATGGAGAAAAGCGTCCTCGCTGGCTTGGTCCACTACCATACAATTATCCAAAATATCTGACAGGTGAACTGCCGGGTGATTATGGATTTGATATTGCAGGTCTGAGTGAGGATCCAGTGGCTTTTCGGAAGTACTTCAAGTATATTGAGCTTCTTTTAGCCTAAAATTTTCTTCAGCAGTTTCTTTTTTCTCCAATATCTGGAATCGTATGTAGATGTATTAGTGCACAGCATGAGAGAATATGATTCTTCAGCAGTTTCTTTTTTTCTCCAATATCTGGAATCATATGTAGATGTATTAGGGCACACCATGAGAGAATATGATTCTCAGTTTCTTTTTTCTCCAATATCTGGAATCATATGTAGATGTATTAGTGCACACCATGAGAGAATATGATTATTTGACTTGTGAGTGGCCGGTAGACTAAGGGACGACATGATGATTATCAATGCATATAAGCTGTGAGAGTAATGAAATGATCCGGCATAACATAATATAGACATCACCTTAAAACAGTCCCCGAATGATTATCCACATGTTTGTTTGCTTGATACAAAACTTGCGTACTGCACATCTTTCTATCCAACTTTGGAGATATTTGAGCTGTTCTGTACGTAGTATAACTTTACAGTCCTAAATTACCTTAGATAAGCAACTCTTATTGAATGTATACATTTCTTTTTTAAACCTCCATCAATAATTTTTATGTATGTATCATATTTCAGCTTTGAAATACTGCATGCTCGTTGGGCTATGTTAGCGTCCCTTGGTGCTTTAGTTCCAGAGATCTTAGATATTTTTGGAGCTTTTCATTTCACTGAACCCATCTGGTGGCGAGTGGGATATTCAAAACTTAAGGTTTGTTTTCCATCTCTTGGTTAACCATTTTTCTGGATATCCATCATATAGGATCTTTCCGTGTGTCTGCATGGTTTGTTTTTATATTTTTACGCTTGTTTGGTTATGTTTTTTTTCACTTTCAAATTACTGTTTAACTTATTGCTTCTGTCTAATCATGTTTTATTTTAAAGTCTAGTTTTTCATGTCATCCTTTATTAATGAAATCAAATAATGAGTTATGACTTCATGTCTTTCAGTGCCGTGATAAGCTTGAGTTCGGTTGCTGTCTTCTATTTCAATTACTCTTTCGCTACTTTGTTTCAATAAATTAGGGACAAACATTTTCAATTACAATATTTCATATTCCCTTCTATAAACTCCATGGGTGTGCGTAGCTCCCCATTCATTCATCCCTACTTTCCAGCACTTGTAATTGACTCTATCATGTTACTGTTTGTGTTCTCGTTCCACCAGGGAGATACACTCGACTATCTTGGAATTCCAGGGCTTCATTTAGCTGGAAGCCAAGGAGTGATCGTCATTGCAATTTGCCAAGCTATTTTGATGGTAACCTATATCAAACAATCTTATGTTCTGCCTTCTCACATTTTCTTTTTGTCATATCTTTTGGCACTTCAGTTAAATGGTTGAGGGAAGCATGACATTATAACGTGTGTTAACTTGAGTTGGTTAACCTCAATCAAATTTCACCCCATTCCCACCAAACACAATAAATGGCTTGGTTCCCATTGCAGTTTCTACAACCAGCCTTGGCCCTTGATTAGCTTGTTTAGGAATTTGGAATTAAAATTTTCCTTTCGGAGATTACACGTTAGAAAAAAAAATTTAAATAGATTTTTGTTTTTTGTTTTAACAAGTGTAACTTTTCATTGGTGTATGAAAAGGAATAAAAGAGAATTAAAATATATGAACCTCCGAATGGGGAGATAGGAAAAGCATAACGCCCAAAGAAAAAAGAAAAAAGAAAAAAGAAAAAGATTACAAGAACCTGAAAAGAAACCAAAACAAACCAAACAAAAAAGAGGAACTAAAGAATTGCCAACGATAACAAAAAAAAAAAATAAATAATAAATAAATAAATAAATGCAAGACTAGTAGATCAAAAAGCTCTTAGAGAGCTTACAAACAAAAGCTAAACATTAATGTGAAGCTCCTCAAACCACCGCAGCTTCAAATAGAAACCGCACCAACCAGCTTGAAATATCACACCAGAAAAGGAAGAAAAGCAACAACTGCCATGGAGAAATGCACGAACACCACATGGCCGAACAACCAAAAGCTCTATCAGCAAAACTCAACTGCAAAGAAAACCAAAAGAAGCAGTAACTTCACCCAAGAACTAAAGGCCGAAGAGCAAATCAAAAAACATCAGCCAAAGACAAGATCATTCCAAGGAGAAAGAACGGAAGTACAGGCAAAAACCCCGTTCTCAAAGAAATAATCTCCATAGATTTAATGCCCCTTTGTTTATAGAGGAAGAAAGTTGATGAGAGGGGAAGATGGAGAATCATCTGACTGTGTTCTTTGAAGGGGAATTAATTTTGTCTTCTTGAAAAATAGAACAAAGAGTTTCTTCAAAACCTTCATCATCAAGTGCCTCATTAGAAACCTTTTCATGCCACTAACAATTTGAAAATTATACTCCAAGTCATAACTACTAAGACCTATCTGACTCCTCATTTCCTCCACAAAAACTAAACTTTTGATGATACCATTTGTTGAGTTAATATTAGAAAGGATGTTATTAACTAAAGATGTTGAAGAATTGAGATTGTCTATTGTTAAGAGGGCATATTAAACTATTATATGTCTGATTGTTCTTACAACCGTATGATGTAAGTTAAAATGCAAGTAGGTTGGACCTGAGTATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGATCCCTTGAACCTGTCCGAGGATGCTGCAGCTTTTGAGGAACTGAAAGTGAAAGAGATTAAAAATGGGCGGTTAGCCATGGTTGCTTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTAAGGGACCAATCCAAAACCTTCTTGAACACGTTTCAGACCCTTTCCACAATAACTTTCTTTCCCTGCTCAACTCATCATGAAGTAGCTTATAATTGGAATCTGGATTATAAAGTATAGTTTCCTCAAATCTATATAGTGTTCATAAGGGATGGACAAACAATCATGCTGTTCTAGATGGGAGATTGTTGCTTGATAAGTTAATACTTAATGGTGTGGTCATTATATCTATCTGTCGTACATCAAGCATCTTTGAGAAGCTAAAGCTTGGTAAAATTTGTTTTTGAAACAAATTTTACTCAACTTTAATAAAGTATCTTGAACCTTAAAAATGTTA

mRNA sequence

TTTGACCAAAAAAAACATCTGATGTTTAAACGCGCCATAAAAGTGCGTTATAGCTCAGTGATGACTCTAATAGCATAGATGGTAATGGCGCTATTTCATCCACACACTTCGCCTTCTGCAGTTTCATCTTCCTCCGCCTCATTCTATGGGAGTTCTCTTCAACAACTCCGTTCGCGCACCATAGCCCTCAATCTTCGAAACAGCCCCTCCATCCCTCATCGTTTCACTTGCACAGCTTCATGGCAGGAGCTTGCGGGGATTTTGATATTCTCCGCAATTCCTTTCACGGCCGTGAAAGCCATCGCCAATAGCCCATTCGGAGAGTCGCTCCAGAGGCAATTGGAAAAGAAAAAAAATGCTGCGGTCGCCAAGTCTTCGAAGTTCAAGGCTCTTGCTGAGCAGGCTAGAAAAGATAGCTCGTGGTATGGAGAAAAGCGTCCTCGCTGGCTTGGTCCACTACCATACAATTATCCAAAATATCTGACAGGTGAACTGCCGGGTGATTATGGATTTGATATTGCAGGTCTGAGTGAGGATCCAGTGGCTTTTCGGAAGTACTTCAACTTTGAAATACTGCATGCTCGTTGGGCTATGTTAGCGTCCCTTGGTGCTTTAGTTCCAGAGATCTTAGATATTTTTGGAGCTTTTCATTTCACTGAACCCATCTGGTGGCGAGTGGGATATTCAAAACTTAAGGGAGATACACTCGACTATCTTGGAATTCCAGGGCTTCATTTAGCTGGAAGCCAAGGAGTGATCGTCATTGCAATTTGCCAAGCTATTTTGATGGTTGGACCTGAGTATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGATCCCTTGAACCTGTCCGAGGATGCTGCAGCTTTTGAGGAACTGAAAGTGAAAGAGATTAAAAATGGGCGGTTAGCCATGGTTGCTTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTAAGGGACCAATCCAAAACCTTCTTGAACACGTTTCAGACCCTTTCCACAATAACTTTCTTTCCCTGCTCAACTCATCATGAAGTAGCTTATAATTGGAATCTGGATTATAAAGTATAGTTTCCTCAAATCTATATAGTGTTCATAAGGGATGGACAAACAATCATGCTGTTCTAGATGGGAGATTGTTGCTTGATAAGTTAATACTTAATGGTGTGGTCATTATATCTATCTGTCGTACATCAAGCATCTTTGAGAAGCTAAAGCTTGGTAAAATTTGTTTTTGAAACAAATTTTACTCAACTTTAATAAAGTATCTTGAACCTTAAAAATGTTA

Coding sequence (CDS)

ATGGTAATGGCGCTATTTCATCCACACACTTCGCCTTCTGCAGTTTCATCTTCCTCCGCCTCATTCTATGGGAGTTCTCTTCAACAACTCCGTTCGCGCACCATAGCCCTCAATCTTCGAAACAGCCCCTCCATCCCTCATCGTTTCACTTGCACAGCTTCATGGCAGGAGCTTGCGGGGATTTTGATATTCTCCGCAATTCCTTTCACGGCCGTGAAAGCCATCGCCAATAGCCCATTCGGAGAGTCGCTCCAGAGGCAATTGGAAAAGAAAAAAAATGCTGCGGTCGCCAAGTCTTCGAAGTTCAAGGCTCTTGCTGAGCAGGCTAGAAAAGATAGCTCGTGGTATGGAGAAAAGCGTCCTCGCTGGCTTGGTCCACTACCATACAATTATCCAAAATATCTGACAGGTGAACTGCCGGGTGATTATGGATTTGATATTGCAGGTCTGAGTGAGGATCCAGTGGCTTTTCGGAAGTACTTCAACTTTGAAATACTGCATGCTCGTTGGGCTATGTTAGCGTCCCTTGGTGCTTTAGTTCCAGAGATCTTAGATATTTTTGGAGCTTTTCATTTCACTGAACCCATCTGGTGGCGAGTGGGATATTCAAAACTTAAGGGAGATACACTCGACTATCTTGGAATTCCAGGGCTTCATTTAGCTGGAAGCCAAGGAGTGATCGTCATTGCAATTTGCCAAGCTATTTTGATGGTTGGACCTGAGTATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGATCCCTTGAACCTGTCCGAGGATGCTGCAGCTTTTGAGGAACTGAAAGTGAAAGAGATTAAAAATGGGCGGTTAGCCATGGTTGCTTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTAAGGGACCAATCCAAAACCTTCTTGAACACGTTTCAGACCCTTTCCACAATAACTTTCTTTCCCTGCTCAACTCATCATGA

Protein sequence

MVMALFHPHTSPSAVSSSSASFYGSSLQQLRSRTIALNLRNSPSIPHRFTCTASWQELAGILIFSAIPFTAVKAIANSPFGESLQRQLEKKKNAAVAKSSKFKALAEQARKDSSWYGEKRPRWLGPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSEDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPIQNLLEHVSDPFHNNFLSLLNSS

Homology

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BLAST of CmaCh09G000120 vs. Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 5.6e-53
Identity = 116/247 (46.96%), Postives = 147/247 (59.51%), Query Frame = 1


Query: 83  SLQRQLEKKKNAAVAKSSKFKALAEQARKDSSWYGEKRPRWLGPLPYNYPKYLTGELPGD 142
           +L  ++E  K AA  K +K  A A+ A  +  WYG  R +WLGP   N P YLTGE PGD
Sbjct: 10  ALTVKVEAAKKAAGTKQTK-AAPAKSAGIE--WYGPDRAKWLGPFSTNTPAYLTGEFPGD 69

Query: 143 YGFDIAGLSEDPVAFRKYFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGY 202
           YG+D AGLS DP  F+KY   E++HARWA+L +LG L PE+L  +    F EP+W++ G 
Sbjct: 70  YGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGA 129

Query: 203 SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDI 262
                  LDYLG P   L  +Q ++     Q +LM   E  R  G  A E L    PG+ 
Sbjct: 130 QIFSEGGLDYLGSPA--LIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGE- 189

Query: 263 NYPGGVLFDPLNLSEDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPIQNLLEHV 322
                  FDPL L++D   F ELKVKEIKNGRLAM +  GF+ QA +TGKGPIQNL +H+
Sbjct: 190 ------SFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHL 244

Query: 323 SDPFHNN 330
           +DP  NN
Sbjct: 250 ADPGTNN 244

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BLAST of CmaCh09G000120 vs. Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.6e-52
Identity = 111/217 (51.15%), Postives = 136/217 (62.67%), Query Frame = 1


Query: 113 SSWYGEKRPRWLGPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAM 172
           S WYGE RP++LGP     P YLTGE PGDYG+D AGLS DP  F +    E++H RWAM
Sbjct: 47  SIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAM 106

Query: 173 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 232
           L +LG + PEIL   G   F E +W++ G        LDYLG P  +L  +Q ++ I  C
Sbjct: 107 LGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWAC 166

Query: 233 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSEDAAAFEELKVKEIKN 292
           Q +LM   E  R  G     PLG  L  D  YPGG  FDPL L++D  AF ELKVKEIKN
Sbjct: 167 QVVLMGFVEGYRVGG----GPLGEGL--DKIYPGGA-FDPLGLADDPEAFAELKVKEIKN 226

Query: 293 GRLAMVAWLGFYSQAALTGKGPIQNLLEHVSDPFHNN 330
           GRLAM +  GF+ QA +TGKGPI+NL +H++DP  NN
Sbjct: 227 GRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANN 253

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BLAST of CmaCh09G000120 vs. Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 3.6e-52
Identity = 116/260 (44.62%), Postives = 155/260 (59.62%), Query Frame = 1


Query: 71  AVKAIANSPF-GESLQRQLEKKKNAAVAKSSKFKALAEQARKDSSWYGEKRPRWLGPLPY 130
           A  A+++  F G++++      + +   + +  KA+A+ A   S WYG  R ++LGP   
Sbjct: 4   ATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSG 63

Query: 131 NYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAMLASLGALVPEILDIFGA 190
             P YLTGE PGDYG+D AGLS DP  F K    E++H RWAML +LG + PE+L   G 
Sbjct: 64  ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123

Query: 191 FHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIE 250
             F E +W++ G        LDYLG P   L  +Q ++ I  CQ +LM   E  R  G  
Sbjct: 124 -KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVLMGAVEGYRIAG-- 183

Query: 251 ALEPLGIYLPGDINYPGGVLFDPLNLSEDAAAFEELKVKEIKNGRLAMVAWLGFYSQAAL 310
              PLG  +  D  YPGG  FDPL L+ED  AF ELKVKEIKNGRLAM +  GF+ QA +
Sbjct: 184 --GPLGEVV--DPLYPGG-SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 243

Query: 311 TGKGPIQNLLEHVSDPFHNN 330
           TGKGP++NL +H++DP +NN
Sbjct: 244 TGKGPLENLADHLADPVNNN 253

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BLAST of CmaCh09G000120 vs. Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 6.2e-52
Identity = 110/224 (49.11%), Postives = 137/224 (61.16%), Query Frame = 1


Query: 106 AEQARKDSSWYGEKRPRWLGPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEI 165
           A+     S WYG  R ++LGP     P YLTGE PGDYG+D AGLS DP  F K    E+
Sbjct: 41  AKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 100

Query: 166 LHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQG 225
           +H RWAML +LG + PE+L   G   F E +W++ G        LDYLG P   L  +Q 
Sbjct: 101 IHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQS 160

Query: 226 VIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSEDAAAFEEL 285
           ++ I  CQ +LM   E  R  G    EPLG  +  D  YPGG  FDPL L+ED  AF EL
Sbjct: 161 ILAIWACQVVLMGAVEGYRVAG----EPLGEVV--DPLYPGG-SFDPLGLAEDPEAFAEL 220

Query: 286 KVKEIKNGRLAMVAWLGFYSQAALTGKGPIQNLLEHVSDPFHNN 330
           KVKEIKNGRLAM +  GF+ QA +TGKGP++NL +H++DP +NN
Sbjct: 221 KVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNN 254

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BLAST of CmaCh09G000120 vs. Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 8.0e-52
Identity = 111/229 (48.47%), Postives = 139/229 (60.70%), Query Frame = 1


Query: 101 KFKALAEQARKDSSWYGEKRPRWLGPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKY 160
           K  + A+     S WYG  R ++LGP     P YLTGE PGDYG+D AGLS DP  F K 
Sbjct: 37  KTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKN 96

Query: 161 FNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHL 220
              E++H RWAML +LG + PE+L   G   F E +W++ G        LDYLG P   L
Sbjct: 97  RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKGGSQIFSQGGLDYLGNPS--L 156

Query: 221 AGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSEDAA 280
             +Q ++ I  CQ +LM   E  R  G    EPLG  +  D  YPGG  FDPL L+ED  
Sbjct: 157 VHAQSILAIWACQVVLMGAVEGYRVAG----EPLGEVV--DPLYPGG-SFDPLGLAEDPE 216

Query: 281 AFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPIQNLLEHVSDPFHNN 330
           AF ELKVKEIKNGRLAM +  GF+ QA +TGKGP++NL +H++DP +NN
Sbjct: 217 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255

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BLAST of CmaCh09G000120 vs. TrEMBL
Match: A0A067KWW2_JATCU (Chlorophyll a-b binding protein, chloroplastic OS=Jatropha curcas GN=JCGZ_08016 PE=3 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 6.0e-147
Identity = 260/338 (76.92%), Postives = 294/338 (86.98%), Query Frame = 1


Query: 1   MVMALFHPHTSPSA--VSSSSASFY--GSSLQQLRSRTIALNLRNSPSIPHRFTCTASWQ 60
           MV+ L HP  S S+  +SSSS+SF+  GS     + R I L    S S P    C ASWQ
Sbjct: 1   MVLQL-HPQASVSSPLLSSSSSSFFVQGSKPLAPKPRKILLKRIASSSTP---PCKASWQ 60

Query: 61  ELAGILIFSAIPFTAVKAIANSPFGESLQRQLEKKKNAAVAKSSKFKALAEQARKDSSWY 120
           ELAG+L+FSAIPFTAVKAIANSP GESLQR++E++K  A+ +SSK +ALA +ARK+S WY
Sbjct: 61  ELAGVLVFSAIPFTAVKAIANSPLGESLQRRMEERKKVAIQESSKLQALAAKARKESLWY 120

Query: 121 GEKRPRWLGPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAMLASL 180
           GE+RP WLGP+PY+YP+YLTGELPGDYGFD+AGLS+DPVAF++YFNFEILHARWAMLA+L
Sbjct: 121 GEERPHWLGPIPYDYPQYLTGELPGDYGFDVAGLSKDPVAFQRYFNFEILHARWAMLAAL 180

Query: 181 GALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAIL 240
           GALVPE+LD+ GAFHF EP+WWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQA+L
Sbjct: 181 GALVPELLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQALL 240

Query: 241 MVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSEDAAAFEELKVKEIKNGRLA 300
           MVGPEYARYCGIEALEPLGIYLPGDINYPGG LFDPLNLS D  AFEELKVKEIKNGRLA
Sbjct: 241 MVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSGDPVAFEELKVKEIKNGRLA 300

Query: 301 MVAWLGFYSQAALTGKGPIQNLLEHVSDPFHNNFLSLL 335
           MVAWLGFY+QAALTGKGP+QNLLEH+SDPFHNN  S+L
Sbjct: 301 MVAWLGFYAQAALTGKGPVQNLLEHISDPFHNNLCSVL 334

[Close]

BLAST of CmaCh09G000120 vs. TrEMBL
Match: D7UDH1_VITVI (Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_18s0122g00430 PE=3 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 7.9e-147
Identity = 252/325 (77.54%), Postives = 282/325 (86.77%), Query Frame = 1


Query: 12  PSAVSSSSASFYGSSLQQLRSRTIALNLRNSPSIPHRFTCTASWQELAGILIFSAIPFTA 71
           P +VSSSS+SF+G    +L S+      RN  S      C ASWQELAG+LIFSAIPFTA
Sbjct: 6   PCSVSSSSSSFFGGYRHRLCSKISWPKSRNVNSTSTYSGCKASWQELAGVLIFSAIPFTA 65

Query: 72  VKAIANSPFGESLQRQLEKKKNAAVAKSSKFKALAEQARKDSSWYGEKRPRWLGPLPYNY 131
           VKAIANSP GESLQ ++E+ K AAV  SSKFKALAE+A+ +S WYGE+RPRWLGP+PY+Y
Sbjct: 66  VKAIANSPLGESLQSRMEENKKAAVKNSSKFKALAEKAKNESLWYGEERPRWLGPIPYDY 125

Query: 132 PKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAMLASLGALVPEILDIFGAFH 191
           P YLTGELPGDYGFDIAGL +DPVAF+KYFNFEILHARWAMLA+LGAL+PE+LD+ GAFH
Sbjct: 126 PAYLTGELPGDYGFDIAGLGKDPVAFQKYFNFEILHARWAMLAALGALLPELLDLLGAFH 185

Query: 192 FTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEAL 251
           F EP+WWRVGYSKLKGDTLDYLGIPG H AGSQGVIVIAICQA+LMVGPEYARYCGIEAL
Sbjct: 186 FVEPVWWRVGYSKLKGDTLDYLGIPGFHFAGSQGVIVIAICQALLMVGPEYARYCGIEAL 245

Query: 252 EPLGIYLPGDINYPGGVLFDPLNLSEDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTG 311
           EPLGIYLPGDINYPGG LFDPLNLS+D  AFEELKVKEIKNGRLAMVAWLGFY QAA TG
Sbjct: 246 EPLGIYLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAATG 305

Query: 312 KGPIQNLLEHVSDPFHNNFLSLLNS 337
           KGP+QNLL+H++DPFHNN LS+  +
Sbjct: 306 KGPVQNLLDHLADPFHNNLLSIFKA 330

[Close]

BLAST of CmaCh09G000120 vs. TrEMBL
Match: B9R8V1_RICCO (Chlorophyll a-b binding protein, chloroplastic OS=Ricinus communis GN=RCOM_1602420 PE=3 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 8.7e-146
Identity = 255/330 (77.27%), Postives = 285/330 (86.36%), Query Frame = 1


Query: 5   LFHPHTSPSAVSSSSASFYGSSLQQLRSRTIALNLRNSPSIPHRFTCTASWQELAGILIF 64
           L  PH S S +SSS  S  GS L  L+ R I  N   +PS P    C ASWQELAG+L+F
Sbjct: 4   LLQPHPSFSWISSSLFS-QGSKLLALKPRKILFN--GNPSSP----CKASWQELAGVLVF 63

Query: 65  SAIPFTAVKAIANSPFGESLQRQLEKKKNAAVAKSSKFKALAEQARKDSSWYGEKRPRWL 124
           SAIPFTAVKA+ANSP GESLQR+LE+ K  AV +SSKF+AL  +ARK+S WYGE+RPRWL
Sbjct: 64  SAIPFTAVKALANSPLGESLQRRLEESKKVAVKESSKFQALTAKARKESLWYGEERPRWL 123

Query: 125 GPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAMLASLGALVPEIL 184
           GP+PY+YP YLTGELPGDYGFD+AGLS+D VAF++YFNFEILHARWAMLA+LGAL PE+L
Sbjct: 124 GPIPYDYPAYLTGELPGDYGFDVAGLSKDSVAFQRYFNFEILHARWAMLAALGALAPEVL 183

Query: 185 DIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYAR 244
           D+ GAFHF EP+WWRVGYSKLKGDTLDYLGIPGLH AGSQGV+VIAICQA+LMVGPEYAR
Sbjct: 184 DLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGSQGVLVIAICQALLMVGPEYAR 243

Query: 245 YCGIEALEPLGIYLPGDINYPGGVLFDPLNLSEDAAAFEELKVKEIKNGRLAMVAWLGFY 304
           YCGIEALEPLGIYLPGDINYPGG LFDPLNLS DA A EELKVKEIKNGRLAMVAWLGFY
Sbjct: 244 YCGIEALEPLGIYLPGDINYPGGPLFDPLNLSSDAVALEELKVKEIKNGRLAMVAWLGFY 303

Query: 305 SQAALTGKGPIQNLLEHVSDPFHNNFLSLL 335
           +QAALTGKGP+QNL+EH+SDPFHNN L +L
Sbjct: 304 AQAALTGKGPVQNLVEHISDPFHNNLLCVL 326

[Close]

BLAST of CmaCh09G000120 vs. TrEMBL
Match: A0A059BQZ6_EUCGR (Chlorophyll a-b binding protein, chloroplastic OS=Eucalyptus grandis GN=EUGRSUZ_F01826 PE=3 SV=1)

HSP 1 Score: 523.9 bits (1348), Expect = 1.5e-145
Identity = 255/332 (76.81%), Postives = 282/332 (84.94%), Query Frame = 1


Query: 3   MALFHPHTSPSAVSSSSASFYGSSLQQLRSRTIALNLRNSPSIPHRFTCTASWQELAGIL 62
           MA+     SPS+ SSS A    S L++L +R      R          C ASWQELAG+L
Sbjct: 1   MAMLPSPVSPSSPSSSFA--LASPLRRLPARPAPPRRRRRRLPKSASVCKASWQELAGVL 60

Query: 63  IFSAIPFTAVKAIANSPFGESLQRQLEKKKNAAVAKSSKFKALAEQARKDSSWYGEKRPR 122
           +FSAIPFTAVKAIANSP GESLQR++E++K  AV  SS+F+ALAE+ARK+SSWYGE RP+
Sbjct: 61  VFSAIPFTAVKAIANSPLGESLQRRMEERKKFAVENSSRFRALAEKARKESSWYGEDRPQ 120

Query: 123 WLGPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAMLASLGALVPE 182
           WLGP+PY+YP YLTGE PGDYGFDIAGL+ DP AF KYFNFEILHARWAMLA+LGALVPE
Sbjct: 121 WLGPIPYDYPAYLTGEYPGDYGFDIAGLARDPTAFEKYFNFEILHARWAMLAALGALVPE 180

Query: 183 ILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEY 242
           +LD+ GAFHF EP+WWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQA+LMVGPEY
Sbjct: 181 VLDMVGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQALLMVGPEY 240

Query: 243 ARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSEDAAAFEELKVKEIKNGRLAMVAWLG 302
           ARYCGIEALEPLGIYLPGDINYPGG LFDPLNLS+D A FEELKVKEIKNGRLAMVAWLG
Sbjct: 241 ARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSKDPATFEELKVKEIKNGRLAMVAWLG 300

Query: 303 FYSQAALTGKGPIQNLLEHVSDPFHNNFLSLL 335
           FY QAALTGKGPIQNLLEH+SDP HNN  S+L
Sbjct: 301 FYVQAALTGKGPIQNLLEHISDPLHNNLFSVL 330

[Close]

BLAST of CmaCh09G000120 vs. TrEMBL
Match: B9H5X9_POPTR (Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa GN=POPTR_0005s28000g PE=3 SV=1)

HSP 1 Score: 523.1 bits (1346), Expect = 2.5e-145
Identity = 250/334 (74.85%), Postives = 287/334 (85.93%), Query Frame = 1


Query: 1   MVMALFHPHTSPSAVSSSSASFYGSSLQQLRSRTIALNLRNSPSIPHRFTCTASWQELAG 60
           + +A+ HPH S SA  SSS+ F    + ++       N  NS S+P    C ASWQELAG
Sbjct: 5   LAVAVVHPHVSFSA--SSSSFFAHQRVPRILLSKSRSNSSNSTSLPASI-CKASWQELAG 64

Query: 61  ILIFSAIPFTAVKAIANSPFGESLQRQLEKKKNAAVAKSSKFKALAEQARKDSSWYGEKR 120
           ++IFSAIPFTAVKAIANSP GESLQR+LE++K  AV +SSKFKALA++ARK+S WYGE+R
Sbjct: 65  VVIFSAIPFTAVKAIANSPLGESLQRRLEERKKLAVQQSSKFKALAQKARKESFWYGEER 124

Query: 121 PRWLGPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAMLASLGALV 180
           PRWLGP+ Y YP YL+GELPGDYGFD+AGL+EDPVAF++YFNFEILHARWAMLA+LGAL+
Sbjct: 125 PRWLGPISYQYPTYLSGELPGDYGFDVAGLAEDPVAFQRYFNFEILHARWAMLAALGALI 184

Query: 181 PEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGP 240
           PE+LD+ GAFHF EP+WWRVGYSKLKGDTLDYLGIPGLH AG QGV+VIA CQAILMVGP
Sbjct: 185 PEVLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGGQGVLVIAFCQAILMVGP 244

Query: 241 EYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSEDAAAFEELKVKEIKNGRLAMVAW 300
           EYARYCGIEALEPLGIYLPGDINYPGG+LFDPLNLS+D  +FEELKVKEIKNGRLAMVAW
Sbjct: 245 EYARYCGIEALEPLGIYLPGDINYPGGILFDPLNLSKDPVSFEELKVKEIKNGRLAMVAW 304

Query: 301 LGFYSQAALTGKGPIQNLLEHVSDPFHNNFLSLL 335
           LGFY QAALTGKGP++NL+EH+SDP HNN  S L
Sbjct: 305 LGFYIQAALTGKGPVENLVEHISDPLHNNLFSTL 335

[Close]

BLAST of CmaCh09G000120 vs. TAIR10
Match: AT1G76570.1 (AT1G76570.1 Chlorophyll A-B binding family protein)

HSP 1 Score: 491.9 bits (1265), Expect = 3.2e-139
Identity = 238/335 (71.04%), Postives = 279/335 (83.28%), Query Frame = 1


Query: 3   MALFHPHTSPSAVSSSSASFYGSSLQQLRSRTIALNLRNSPSIPH-RFTCTASWQELAGI 62
           MALF        +SS S+S+  SS+  L  R +    RN  ++   R  C ASWQELAG+
Sbjct: 1   MALFQ-----EKLSSLSSSY--SSIHSL-PRILVSKPRNRIAVTKSRSICRASWQELAGV 60

Query: 63  LIFSAIPFTAVKAIANSPFGESLQRQLEKKKNAAVAKSSKFKALAEQARKDSSWYGEKRP 122
           L+FSAIPFTAVKAIANS  G SL+R+LE+KK  AV  SS+FK+ A++AR DS WYG++RP
Sbjct: 61  LVFSAIPFTAVKAIANSSIGVSLRRRLEEKKKEAVENSSRFKSKAQEARNDSKWYGKERP 120

Query: 123 RWLGPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAMLASLGALVP 182
           RW GP+PY+YP YLTGELPGDYGFDIAGL +D + F KYFNFEILHARWAMLA+LGAL+P
Sbjct: 121 RWFGPIPYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIP 180

Query: 183 EILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPE 242
           E+ D+ G FHF EP+WWRVGYSKL+G+TL+YLGIPGLH+AGSQGVIVIAICQ +LMVGPE
Sbjct: 181 EVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAICQVLLMVGPE 240

Query: 243 YARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSEDAAAFEELKVKEIKNGRLAMVAWL 302
           YARYCGIEALEPLGIYLPGDINYPGG LFDPLNLSED  AFE+LKVKEIKNGRLAMVAWL
Sbjct: 241 YARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWL 300

Query: 303 GFYSQAALTGKGPIQNLLEHVSDPFHNNFLSLLNS 337
           GFY+QAA TGKGP+QNL++HVSDP HNN +++L +
Sbjct: 301 GFYAQAAFTGKGPVQNLVDHVSDPLHNNLIAMLQT 327

[Close]

BLAST of CmaCh09G000120 vs. TAIR10
Match: AT3G27690.1 (AT3G27690.1 photosystem II light harvesting complex gene 2.3)

HSP 1 Score: 211.5 bits (537), Expect = 8.3e-55
Identity = 113/217 (52.07%), Postives = 137/217 (63.13%), Query Frame = 1


Query: 113 SSWYGEKRPRWLGPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAM 172
           S WYG  RP++LGP   N P YLTGE PGDYG+D AGLS DP  F K    E++H+RWAM
Sbjct: 48  SIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 107

Query: 173 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 232
           L +LG   PEIL   G   F E +W++ G        LDYLG P  +L  +Q ++ I  C
Sbjct: 108 LGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAC 167

Query: 233 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSEDAAAFEELKVKEIKN 292
           Q +LM   E  R  G     PLG  L  D  YPGG  FDPLNL+ED  AF ELKVKE+KN
Sbjct: 168 QVVLMGFIEGYRIGG----GPLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKN 227

Query: 293 GRLAMVAWLGFYSQAALTGKGPIQNLLEHVSDPFHNN 330
           GRLAM +  GF+ QA +TGKGPI+NL +H++DP  NN
Sbjct: 228 GRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 254

[Close]

BLAST of CmaCh09G000120 vs. TAIR10
Match: AT2G05070.1 (AT2G05070.1 photosystem II light harvesting complex gene 2.2)

HSP 1 Score: 206.8 bits (525), Expect = 2.0e-53
Identity = 112/217 (51.61%), Postives = 136/217 (62.67%), Query Frame = 1


Query: 113 SSWYGEKRPRWLGPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAM 172
           S WYG  RP++LGP   N P YLTGE PGDYG+D AGLS DP  F K    E++H+RWAM
Sbjct: 47  SIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106

Query: 173 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 232
           L +LG   PEIL   G   F E +W++ G        LDYLG P  +L  +Q ++ I   
Sbjct: 107 LGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAV 166

Query: 233 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSEDAAAFEELKVKEIKN 292
           Q +LM   E  R  G     PLG  L  D  YPGG  FDPLNL+ED  AF ELKVKE+KN
Sbjct: 167 QVVLMGFIEGYRIGG----GPLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKN 226

Query: 293 GRLAMVAWLGFYSQAALTGKGPIQNLLEHVSDPFHNN 330
           GRLAM +  GF+ QA +TGKGPI+NL +H++DP  NN
Sbjct: 227 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253

[Close]

BLAST of CmaCh09G000120 vs. TAIR10
Match: AT2G05100.1 (AT2G05100.1 photosystem II light harvesting complex gene 2.1)

HSP 1 Score: 206.8 bits (525), Expect = 2.0e-53
Identity = 112/217 (51.61%), Postives = 136/217 (62.67%), Query Frame = 1


Query: 113 SSWYGEKRPRWLGPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAM 172
           S WYG  RP++LGP   N P YLTGE PGDYG+D AGLS DP  F K    E++H+RWAM
Sbjct: 47  SIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106

Query: 173 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 232
           L +LG   PEIL   G   F E +W++ G        LDYLG P  +L  +Q ++ I   
Sbjct: 107 LGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAV 166

Query: 233 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSEDAAAFEELKVKEIKN 292
           Q +LM   E  R  G     PLG  L  D  YPGG  FDPLNL+ED  AF ELKVKE+KN
Sbjct: 167 QVVLMGFIEGYRIGG----GPLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKN 226

Query: 293 GRLAMVAWLGFYSQAALTGKGPIQNLLEHVSDPFHNN 330
           GRLAM +  GF+ QA +TGKGPI+NL +H++DP  NN
Sbjct: 227 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253

[Close]

BLAST of CmaCh09G000120 vs. TAIR10
Match: AT5G54270.1 (AT5G54270.1 light-harvesting chlorophyll B-binding protein 3)

HSP 1 Score: 203.8 bits (517), Expect = 1.7e-52
Identity = 101/215 (46.98%), Postives = 132/215 (61.40%), Query Frame = 1


Query: 115 WYGEKRPRWLGPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAMLA 174
           WYG  R ++LGP     P YLTGE PGDYG+D AGLS DP AF K    E++H RWAML 
Sbjct: 47  WYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLG 106

Query: 175 SLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQA 234
           + G + PE+L  +    F EP+W++ G        LDYLG P  +L  +Q ++ +   Q 
Sbjct: 107 AFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAVLGFQV 166

Query: 235 ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSEDAAAFEELKVKEIKNGR 294
           ILM   E  R  G++ +        G+  YPGG  FDPL L++D   F ELKVKEIKNGR
Sbjct: 167 ILMGLVEGFRINGLDGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGR 226

Query: 295 LAMVAWLGFYSQAALTGKGPIQNLLEHVSDPFHNN 330
           LAM +  GF+ QA +TGKGP++NLL+H+ +P  NN
Sbjct: 227 LAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253

[Close]

BLAST of CmaCh09G000120 vs. NCBI nr
Match: gi|659105211|ref|XP_008453032.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo])

HSP 1 Score: 625.2 bits (1611), Expect = 6.8e-176
Identity = 304/337 (90.21%), Postives = 321/337 (95.25%), Query Frame = 1


Query: 1   MVMALFHPHTSPSAVSSSSASFYGSSLQQLRSRTIALNLRNSPSIPHRFTCTASWQELAG 60
           +VMAL  PHT  S++SSSSASFYG+ LQQLR  T  LNLR++ SI HR TC ASWQELAG
Sbjct: 8   IVMALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAG 67

Query: 61  ILIFSAIPFTAVKAIANSPFGESLQRQLEKKKNAAVAKSSKFKALAEQARKDSSWYGEKR 120
           +LIFSA+PFTAVKAIANSP GESLQRQLEKKK +AVA SSKFKALAE+ARKDSSWYGE+R
Sbjct: 68  VLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDSSWYGEER 127

Query: 121 PRWLGPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAMLASLGALV 180
           PRWLGPLPY+YPKYLTGELPGDYGFDIAGLSEDPVAF+KYFNFEILHARWAMLASLGALV
Sbjct: 128 PRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALV 187

Query: 181 PEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGP 240
           PEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGP
Sbjct: 188 PEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGP 247

Query: 241 EYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSEDAAAFEELKVKEIKNGRLAMVAW 300
           EYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLS+DAAAFEELKVKEIKNGRLAMVAW
Sbjct: 248 EYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAW 307

Query: 301 LGFYSQAALTGKGPIQNLLEHVSDPFHNNFLSLLNSS 338
           LGFYSQAALTGKGP+QNLL+H+SDPFHNNFLSLLNSS
Sbjct: 308 LGFYSQAALTGKGPVQNLLDHISDPFHNNFLSLLNSS 344

[Close]

BLAST of CmaCh09G000120 vs. NCBI nr
Match: gi|449455655|ref|XP_004145567.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 614.8 bits (1584), Expect = 9.2e-173
Identity = 299/335 (89.25%), Postives = 317/335 (94.63%), Query Frame = 1


Query: 3   MALFHPHTSPSAVSSSSASFYGSSLQQLRSRTIALNLRNSPSIPHRFTCTASWQELAGIL 62
           MAL  PHT  S++SSSSAS +G+ LQQ R  T  LNLR++ SI HR TC ASWQELAG+L
Sbjct: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60

Query: 63  IFSAIPFTAVKAIANSPFGESLQRQLEKKKNAAVAKSSKFKALAEQARKDSSWYGEKRPR 122
           IFSAIPFTAVKAIANSP G SLQRQLEKKKN+AVA SSKFKALAE+ARKDSSWYGE+RPR
Sbjct: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDSSWYGEERPR 120

Query: 123 WLGPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAMLASLGALVPE 182
           WLGPLPY+YPKYLTGELPGDYGFDIAGLSEDPVAF+K+FNFEILHARWAMLASLGALVPE
Sbjct: 121 WLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPE 180

Query: 183 ILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEY 242
           ILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEY
Sbjct: 181 ILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEY 240

Query: 243 ARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSEDAAAFEELKVKEIKNGRLAMVAWLG 302
           ARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLS+DAAAFEELKVKEIKNGRLAMVAWLG
Sbjct: 241 ARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG 300

Query: 303 FYSQAALTGKGPIQNLLEHVSDPFHNNFLSLLNSS 338
           FYSQAALTGKGP+QNLL+H++DPFHNNFLSLLNSS
Sbjct: 301 FYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSS 335

[Close]

BLAST of CmaCh09G000120 vs. NCBI nr
Match: gi|802604283|ref|XP_012073543.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Jatropha curcas])

HSP 1 Score: 528.5 bits (1360), Expect = 8.7e-147
Identity = 260/338 (76.92%), Postives = 294/338 (86.98%), Query Frame = 1


Query: 1   MVMALFHPHTSPSA--VSSSSASFY--GSSLQQLRSRTIALNLRNSPSIPHRFTCTASWQ 60
           MV+ L HP  S S+  +SSSS+SF+  GS     + R I L    S S P    C ASWQ
Sbjct: 1   MVLQL-HPQASVSSPLLSSSSSSFFVQGSKPLAPKPRKILLKRIASSSTP---PCKASWQ 60

Query: 61  ELAGILIFSAIPFTAVKAIANSPFGESLQRQLEKKKNAAVAKSSKFKALAEQARKDSSWY 120
           ELAG+L+FSAIPFTAVKAIANSP GESLQR++E++K  A+ +SSK +ALA +ARK+S WY
Sbjct: 61  ELAGVLVFSAIPFTAVKAIANSPLGESLQRRMEERKKVAIQESSKLQALAAKARKESLWY 120

Query: 121 GEKRPRWLGPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAMLASL 180
           GE+RP WLGP+PY+YP+YLTGELPGDYGFD+AGLS+DPVAF++YFNFEILHARWAMLA+L
Sbjct: 121 GEERPHWLGPIPYDYPQYLTGELPGDYGFDVAGLSKDPVAFQRYFNFEILHARWAMLAAL 180

Query: 181 GALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAIL 240
           GALVPE+LD+ GAFHF EP+WWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQA+L
Sbjct: 181 GALVPELLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQALL 240

Query: 241 MVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSEDAAAFEELKVKEIKNGRLA 300
           MVGPEYARYCGIEALEPLGIYLPGDINYPGG LFDPLNLS D  AFEELKVKEIKNGRLA
Sbjct: 241 MVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSGDPVAFEELKVKEIKNGRLA 300

Query: 301 MVAWLGFYSQAALTGKGPIQNLLEHVSDPFHNNFLSLL 335
           MVAWLGFY+QAALTGKGP+QNLLEH+SDPFHNN  S+L
Sbjct: 301 MVAWLGFYAQAALTGKGPVQNLLEHISDPFHNNLCSVL 334

[Close]

BLAST of CmaCh09G000120 vs. NCBI nr
Match: gi|297745621|emb|CBI40786.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 528.1 bits (1359), Expect = 1.1e-146
Identity = 252/325 (77.54%), Postives = 282/325 (86.77%), Query Frame = 1


Query: 12  PSAVSSSSASFYGSSLQQLRSRTIALNLRNSPSIPHRFTCTASWQELAGILIFSAIPFTA 71
           P +VSSSS+SF+G    +L S+      RN  S      C ASWQELAG+LIFSAIPFTA
Sbjct: 6   PCSVSSSSSSFFGGYRHRLCSKISWPKSRNVNSTSTYSGCKASWQELAGVLIFSAIPFTA 65

Query: 72  VKAIANSPFGESLQRQLEKKKNAAVAKSSKFKALAEQARKDSSWYGEKRPRWLGPLPYNY 131
           VKAIANSP GESLQ ++E+ K AAV  SSKFKALAE+A+ +S WYGE+RPRWLGP+PY+Y
Sbjct: 66  VKAIANSPLGESLQSRMEENKKAAVKNSSKFKALAEKAKNESLWYGEERPRWLGPIPYDY 125

Query: 132 PKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAMLASLGALVPEILDIFGAFH 191
           P YLTGELPGDYGFDIAGL +DPVAF+KYFNFEILHARWAMLA+LGAL+PE+LD+ GAFH
Sbjct: 126 PAYLTGELPGDYGFDIAGLGKDPVAFQKYFNFEILHARWAMLAALGALLPELLDLLGAFH 185

Query: 192 FTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEAL 251
           F EP+WWRVGYSKLKGDTLDYLGIPG H AGSQGVIVIAICQA+LMVGPEYARYCGIEAL
Sbjct: 186 FVEPVWWRVGYSKLKGDTLDYLGIPGFHFAGSQGVIVIAICQALLMVGPEYARYCGIEAL 245

Query: 252 EPLGIYLPGDINYPGGVLFDPLNLSEDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTG 311
           EPLGIYLPGDINYPGG LFDPLNLS+D  AFEELKVKEIKNGRLAMVAWLGFY QAA TG
Sbjct: 246 EPLGIYLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAATG 305

Query: 312 KGPIQNLLEHVSDPFHNNFLSLLNS 337
           KGP+QNLL+H++DPFHNN LS+  +
Sbjct: 306 KGPVQNLLDHLADPFHNNLLSIFKA 330

[Close]

BLAST of CmaCh09G000120 vs. NCBI nr
Match: gi|950990885|ref|XP_014504405.1| (PREDICTED: chlorophyll a-b binding protein 5, chloroplastic isoform X1 [Vigna radiata var. radiata])

HSP 1 Score: 526.2 bits (1354), Expect = 4.3e-146
Identity = 255/336 (75.89%), Postives = 282/336 (83.93%), Query Frame = 1


Query: 3   MALFHPHTSPSAVSSSSASFYGSSLQQ--LRSRTIALNLRNSPSIPHR-FTCTASWQELA 62
           M   HP   P +VSS S+  +  SL     RS   A   RNS     R F C ASWQELA
Sbjct: 1   MVSLHPLVCPLSVSSCSSDIFRCSLWSSCYRSACFAPKRRNSSKTEQRSFICNASWQELA 60

Query: 63  GILIFSAIPFTAVKAIANSPFGESLQRQLEKKKNAAVAKSSKFKALAEQARKDSSWYGEK 122
           G+L+FSAIPFTAVKAIANSP GESLQR++E++K +A  KSSKFKALA++ARK+S WYGE 
Sbjct: 61  GVLLFSAIPFTAVKAIANSPLGESLQRKMEEEKKSAEKKSSKFKALADKARKESCWYGED 120

Query: 123 RPRWLGPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAMLASLGAL 182
           RPRWLGP+ Y YP YLTG+LPGDYGFDIAGL +DPVA RKYFNFEILHARWAMLAS+GAL
Sbjct: 121 RPRWLGPISYEYPSYLTGDLPGDYGFDIAGLGKDPVALRKYFNFEILHARWAMLASIGAL 180

Query: 183 VPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVG 242
           +PEILD+ GAFHF EP+WWRVGYSKLKGDTLDYLGI GLH AGSQGV+VIAICQA+LMVG
Sbjct: 181 IPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAICQALLMVG 240

Query: 243 PEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSEDAAAFEELKVKEIKNGRLAMVA 302
           PEYARYCG EALEPLGIYLPGDINYPGG LFDPLNLS D  AFEELKVKEIKNGRLAMVA
Sbjct: 241 PEYARYCGTEALEPLGIYLPGDINYPGGALFDPLNLSNDPEAFEELKVKEIKNGRLAMVA 300

Query: 303 WLGFYSQAALTGKGPIQNLLEHVSDPFHNNFLSLLN 336
           WLGFY QAALTGKGP+QNL++ +SDPFHNNFL+ LN
Sbjct: 301 WLGFYVQAALTGKGPVQNLIDFISDPFHNNFLNSLN 336

The following BLAST results are available for this feature:

BLAST of CmaCh09G000120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CB2_CHLMO	5.6e-53	46.96	Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas ...	[more]
CB24_SOLLC	1.6e-52	51.15	Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4...	[more]
CB2B_SOLLC	3.6e-52	44.62	Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB...	[more]
CB25_NICPL	6.2e-52	49.11	Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN...	[more]
CB23_NICPL	8.0e-52	48.47	Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN...	[more]

BLAST of CmaCh09G000120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067KWW2_JATCU	6.0e-147	76.92	Chlorophyll a-b binding protein, chloroplastic OS=Jatropha curcas GN=JCGZ_08016 ...	[more]
D7UDH1_VITVI	7.9e-147	77.54	Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_18s0122g...	[more]
B9R8V1_RICCO	8.7e-146	77.27	Chlorophyll a-b binding protein, chloroplastic OS=Ricinus communis GN=RCOM_16024...	[more]
A0A059BQZ6_EUCGR	1.5e-145	76.81	Chlorophyll a-b binding protein, chloroplastic OS=Eucalyptus grandis GN=EUGRSUZ_...	[more]
B9H5X9_POPTR	2.5e-145	74.85	Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa GN=POPTR_0...	[more]

BLAST of CmaCh09G000120 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76570.1	3.2e-139	71.04	Chlorophyll A-B binding family protein	[more]
AT3G27690.1	8.3e-55	52.07	photosystem II light harvesting complex gene 2.3	[more]
AT2G05070.1	2.0e-53	51.61	photosystem II light harvesting complex gene 2.2	[more]
AT2G05100.1	2.0e-53	51.61	photosystem II light harvesting complex gene 2.1	[more]
AT5G54270.1	1.7e-52	46.98	light-harvesting chlorophyll B-binding protein 3	[more]

BLAST of CmaCh09G000120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659105211\|ref\|XP_008453032.1\|	6.8e-176	90.21	PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis m...	[more]
gi\|449455655\|ref\|XP_004145567.1\|	9.2e-173	89.25	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X1 [Cucu...	[more]
gi\|802604283\|ref\|XP_012073543.1\|	8.7e-147	76.92	PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Jatropha curcas]	[more]
gi\|297745621\|emb\|CBI40786.3\|	1.1e-146	77.54	unnamed protein product [Vitis vinifera]	[more]
gi\|950990885\|ref\|XP_014504405.1\|	4.3e-146	75.89	PREDICTED: chlorophyll a-b binding protein 5, chloroplastic isoform X1 [Vigna ra...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0009765	photosynthesis, light harvesting

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015996	chlorophyll catabolic process
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G000120.1	CmaCh09G000120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 55..336 score: 2.8E
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 132..307 score: 4.8
IPR023329	Chlorophyll a/b binding protein domain	GENE3D	G3DSA:1.10.3460.10		coord: 129..332 score: 1.8
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 114..334 score: 1.05
None	No IPR available	PANTHER	PTHR21649:SF24	CHLOROPHYLL A-B BINDING FAMILY PROTEIN	coord: 55..336 score: 2.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh09G000120	Cucsa.272500	Cucumber (Gy14) v1	cgycmaB0751
CmaCh09G000120	Cla000513	Watermelon (97103) v1	cmawmB008
CmaCh09G000120	Csa4G664560	Cucumber (Chinese Long) v2	cmacuB024
CmaCh09G000120	MELO3C017067	Melon (DHL92) v3.5.1	cmameB037
CmaCh09G000120	ClCG11G019140	Watermelon (Charleston Gray)	cmawcgB017
CmaCh09G000120	CSPI04G27340	Wild cucumber (PI 183967)	cmacpiB025
CmaCh09G000120	CmoCh09G000130	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G000120	Cp4.1LG00g04030	Cucurbita pepo (Zucchini)	cmacpeB024
CmaCh09G000120	MELO3C017067.2	Melon (DHL92) v3.6.1	cmamedB036
CmaCh09G000120	CsaV3_4G037740	Cucumber (Chinese Long) v3	cmacucB0031
CmaCh09G000120	Cla97C11G225260	Watermelon (97103) v2	cmawmbB022
CmaCh09G000120	Bhi09G002316	Wax gourd	cmawgoB0041
CmaCh09G000120	CsGy4G025660	Cucumber (Gy14) v2	cgybcmaB469

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G000120	Wax gourd	cmawgoB0029
CmaCh09G000120	Cucurbita maxima (Rimu)	cmacmaB051
CmaCh09G000120	Cucurbita moschata (Rifu)	cmacmoB047
CmaCh09G000120	Cucurbita pepo (Zucchini)	cmacpeB045
CmaCh09G000120	Bottle gourd (USVL1VR-Ls)	cmalsiB028
CmaCh09G000120	Silver-seed gourd	carcmaB0134
CmaCh09G000120	Silver-seed gourd	carcmaB0501