CSPI04G27340 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G27340
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Chr4 : 24030560 .. 24031112 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGTAATTGTTCCAATAATCTATGGTTTTTGCGATTTGGCAAAGGAAAGAAAAGGAAAGAAAAAAAAAAAAAAAGAGAAAATCTTAAAACTGGTATTTGATGAGTTTGGCTCAATGATGAGTCCGTCACCAGAGATTGCAATGGCGCTAGTTCAGCCACACACTCCAGCTTCTTCAATTTCATCTTCATCCGCTTCATTGTTCGGAACTTATCTTCAACAATTCCGTCCGCTCACCACAACCCTTAATCTTCGAAGCAACCACTCTATCTCTCATCGTTCCACCTGCAGAGCTTCCTGGCAGGAGGTTTGTAAGAAAGTTATCTACCTGTATCCAACTCTTATCTGATTTCTGACTCCTTCTTTTCATCCTGCTCTAGCTTGCAGGTGTTCTAATATTCTCTGCAATTCCTTTCACGGCGGTTAAAGCCATTGCTAATAGCCCACTTGGAGGGTCGCTCCAGAGACAATTGGAAAAGAAGAAAAATTCTGCCGTAGCCAACTCTTCCAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAAAAGATAGGTAATCGG

mRNA sequence

ATGATGAGTCCGTCACCAGAGATTGCAATGGCGCTAGTTCAGCCACACACTCCAGCTTCTTCAATTTCATCTTCATCCGCTTCATTGTTCGGAACTTATCTTCAACAATTCCGTCCGCTCACCACAACCCTTAATCTTCGAAGCAACCACTCTATCTCTCATCGTTCCACCTGCAGAGCTTCCTGGCAGGAGCTTGCAGGTGTTCTAATATTCTCTGCAATTCCTTTCACGGCGGTTAAAGCCATTGCTAATAGCCCACTTGGAGGGTCGCTCCAGAGACAATTGGAAAAGAAGAAAAATTCTGCCGTAGCCAACTCTTCCAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAAAAGATAGGTAA

Coding sequence (CDS)

ATGATGAGTCCGTCACCAGAGATTGCAATGGCGCTAGTTCAGCCACACACTCCAGCTTCTTCAATTTCATCTTCATCCGCTTCATTGTTCGGAACTTATCTTCAACAATTCCGTCCGCTCACCACAACCCTTAATCTTCGAAGCAACCACTCTATCTCTCATCGTTCCACCTGCAGAGCTTCCTGGCAGGAGCTTGCAGGTGTTCTAATATTCTCTGCAATTCCTTTCACGGCGGTTAAAGCCATTGCTAATAGCCCACTTGGAGGGTCGCTCCAGAGACAATTGGAAAAGAAGAAAAATTCTGCCGTAGCCAACTCTTCCAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAAAAGATAGGTAA

Homology

[Close]

BLAST of CSPI04G27340 vs. TrEMBL
Match: A0A0A0L3G2_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_4G664560 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.2e-51
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


Query: 10  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 69
           MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL
Sbjct: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60

Query: 70  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDR 121
           IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDR
Sbjct: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDR 111

[Close]

BLAST of CSPI04G27340 vs. TrEMBL
Match: D7UDH1_VITVI (Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_18s0122g00430 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.4e-21
Identity = 66/110 (60.00%), Postives = 80/110 (72.73%), Query Frame = 1


Query: 10  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 69
           MAL QP     S+SSSS+S FG Y  +     +    R+ +S S  S C+ASWQELAGVL
Sbjct: 1   MALRQP----CSVSSSSSSFFGGYRHRLCSKISWPKSRNVNSTSTYSGCKASWQELAGVL 60

Query: 70  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD 120
           IFSAIPFTAVKAIANSPLG SLQ ++E+ K +AV NSSKFKALAE+A+ +
Sbjct: 61  IFSAIPFTAVKAIANSPLGESLQSRMEENKKAAVKNSSKFKALAEKAKNE 106

[Close]

BLAST of CSPI04G27340 vs. TrEMBL
Match: W9QWP9_9ROSA (Chlorophyll a-b binding protein, chloroplastic OS=Morus notabilis GN=L484_024786 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.0e-21
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 1


Query: 8   IAMALVQPHTPAS----SISSSSASLFGTY--LQQFRPLTTTLNLRSNHSISHRSTCRAS 67
           +AMA++QPH        S SSSS+S  G+   +   +P     N  +  S    S C+AS
Sbjct: 1   MAMAIIQPHCVRFRLPYSYSSSSSSFVGSLPIIPDLKPPKHPTNTTTYSS----SLCKAS 60

Query: 68  WQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD 120
           WQELAGVL+FSAIPFTAVKA+ANSPLG SLQR+LE++K  AV N+SKFKALAE+ARKD
Sbjct: 61  WQELAGVLVFSAIPFTAVKALANSPLGESLQRRLEERKKFAVENASKFKALAEKARKD 114

[Close]

BLAST of CSPI04G27340 vs. TrEMBL
Match: B9H5X9_POPTR (Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa GN=POPTR_0005s28000g PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.7e-20
Identity = 64/112 (57.14%), Postives = 81/112 (72.32%), Query Frame = 1


Query: 8   IAMALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAG 67
           +A+A+V PH    S S+SS+S F         L+ + +  SN +    S C+ASWQELAG
Sbjct: 5   LAVAVVHPHV---SFSASSSSFFAHQRVPRILLSKSRSNSSNSTSLPASICKASWQELAG 64

Query: 68  VLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD 120
           V+IFSAIPFTAVKAIANSPLG SLQR+LE++K  AV  SSKFKALA++ARK+
Sbjct: 65  VVIFSAIPFTAVKAIANSPLGESLQRRLEERKKLAVQQSSKFKALAQKARKE 113

[Close]

BLAST of CSPI04G27340 vs. TrEMBL
Match: A0A061EWX0_THECC (Chlorophyll a-b binding protein, chloroplastic OS=Theobroma cacao GN=TCM_024723 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.9e-19
Identity = 68/114 (59.65%), Postives = 82/114 (71.93%), Query Frame = 1


Query: 10  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLR--SN-HSISHRSTCRASWQELA 69
           MA + P    SSISSS  +  G   +  R L+T L+L+  SN +S   RS C+ASWQELA
Sbjct: 1   MAQIGPQLRLSSISSSFFNGGGG--EDRRSLSTFLSLKPPSNLNSAKPRSFCKASWQELA 60

Query: 70  GVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDR 121
           GVL+FSAIPFT VKAIA SPLG SLQRQL +KK  AV NSSKF+ALA++AR +R
Sbjct: 61  GVLVFSAIPFTVVKAIAYSPLGESLQRQLLEKKKEAVQNSSKFRALADKARNER 112

[Close]

BLAST of CSPI04G27340 vs. TAIR10
Match: AT1G76570.1 (AT1G76570.1 Chlorophyll A-B binding family protein)

HSP 1 Score: 94.0 bits (232), Expect = 6.9e-20
Identity = 61/111 (54.95%), Postives = 76/111 (68.47%), Query Frame = 1


Query: 10  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISH-RSTCRASWQELAGV 69
           MAL Q     SS+SSS +S+         P       R+  +++  RS CRASWQELAGV
Sbjct: 1   MALFQEKL--SSLSSSYSSIHSL------PRILVSKPRNRIAVTKSRSICRASWQELAGV 60

Query: 70  LIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD 120
           L+FSAIPFTAVKAIANS +G SL+R+LE+KK  AV NSS+FK+ A+EAR D
Sbjct: 61  LVFSAIPFTAVKAIANSSIGVSLRRRLEEKKKEAVENSSRFKSKAQEARND 103

[Close]

BLAST of CSPI04G27340 vs. NCBI nr
Match: gi|700200391|gb|KGN55549.1| (hypothetical protein Csa_4G664560 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 3.2e-51
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


Query: 10  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 69
           MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL
Sbjct: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60

Query: 70  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDR 121
           IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDR
Sbjct: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDR 111

[Close]

BLAST of CSPI04G27340 vs. NCBI nr
Match: gi|449455655|ref|XP_004145567.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 9.3e-51
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 10  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 69
           MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL
Sbjct: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60

Query: 70  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD 120
           IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD
Sbjct: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD 110

[Close]

BLAST of CSPI04G27340 vs. NCBI nr
Match: gi|778697301|ref|XP_011654292.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 9.3e-51
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 10  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 69
           MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL
Sbjct: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60

Query: 70  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD 120
           IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD
Sbjct: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD 110

[Close]

BLAST of CSPI04G27340 vs. NCBI nr
Match: gi|778697304|ref|XP_011654293.1| (PREDICTED: chlorophyll a-b binding protein, chloroplastic isoform X3 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 9.3e-51
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 10  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 69
           MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL
Sbjct: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60

Query: 70  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD 120
           IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD
Sbjct: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD 110

[Close]

BLAST of CSPI04G27340 vs. NCBI nr
Match: gi|659105213|ref|XP_008453033.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X2 [Cucumis melo])

HSP 1 Score: 206.8 bits (525), Expect = 2.1e-50
Identity = 109/119 (91.60%), Postives = 113/119 (94.96%), Query Frame = 1


Query: 1   MMSPSPEIAMALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRA 60
           M+ PSPEI MAL+QPHTPASSISSSSAS +GTYLQQ RPLTTTLNLRSNHSISHRSTCRA
Sbjct: 1   MIIPSPEIVMALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRA 60

Query: 61  SWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD 120
           SWQELAGVLIFSA+PFTAVKAIANSPLG SLQRQLEKKK SAVANSSKFKALAEEARKD
Sbjct: 61  SWQELAGVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKD 119

The following BLAST results are available for this feature:

BLAST of CSPI04G27340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G27340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3G2_CUCSA	2.2e-51	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_4G66456...	[more]
D7UDH1_VITVI	2.4e-21	60.00	Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_18s0122g...	[more]
W9QWP9_9ROSA	7.0e-21	56.78	Chlorophyll a-b binding protein, chloroplastic OS=Morus notabilis GN=L484_024786...	[more]
B9H5X9_POPTR	2.7e-20	57.14	Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa GN=POPTR_0...	[more]
A0A061EWX0_THECC	2.9e-19	59.65	Chlorophyll a-b binding protein, chloroplastic OS=Theobroma cacao GN=TCM_024723 ...	[more]

BLAST of CSPI04G27340 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76570.1	6.9e-20	54.95	Chlorophyll A-B binding family protein	[more]

BLAST of CSPI04G27340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200391\|gb\|KGN55549.1\|	3.2e-51	100.00	hypothetical protein Csa_4G664560 [Cucumis sativus]	[more]
gi\|449455655\|ref\|XP_004145567.1\|	9.3e-51	100.00	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X1 [Cucu...	[more]
gi\|778697301\|ref\|XP_011654292.1\|	9.3e-51	100.00	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X2 [Cucu...	[more]
gi\|778697304\|ref\|XP_011654293.1\|	9.3e-51	100.00	PREDICTED: chlorophyll a-b binding protein, chloroplastic isoform X3 [Cucumis sa...	[more]
gi\|659105213\|ref\|XP_008453033.1\|	2.1e-50	91.60	PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X2 [Cucumis m...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln

Vocabulary: **Biological Process**
Term	Definition
GO:0009765	photosynthesis, light harvesting

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0008150	biological_process
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0015996	chlorophyll catabolic process
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0044710	single-organism metabolic process
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010287	plastoglobule
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0031409	pigment binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G27340.1	CSPI04G27340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 62..119 score: 2.6
None	No IPR available	PANTHER	PTHR21649:SF24	CHLOROPHYLL A-B BINDING FAMILY PROTEIN	coord: 62..119 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G27340	Csa4G664560	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G27340	MELO3C017067	Melon (DHL92) v3.5.1	cpimeB311
CSPI04G27340	Lsi04G024330	Bottle gourd (USVL1VR-Ls)	cpilsiB286
CSPI04G27340	MELO3C017067.2	Melon (DHL92) v3.6.1	cpimedB302
CSPI04G27340	CsaV3_4G037730	Cucumber (Chinese Long) v3	cpicucB212
CSPI04G27340	Cla97C11G225260	Watermelon (97103) v2	cpiwmbB287
CSPI04G27340	Bhi09G002316	Wax gourd	cpiwgoB418
CSPI04G27340	Cucsa.272500	Cucumber (Gy14) v1	cgycpiB409
CSPI04G27340	CmaCh09G000120	Cucurbita maxima (Rimu)	cmacpiB025
CSPI04G27340	CmoCh09G000130	Cucurbita moschata (Rifu)	cmocpiB016
CSPI04G27340	Cp4.1LG00g04030	Cucurbita pepo (Zucchini)	cpecpiB011
CSPI04G27340	CsGy4G025650	Cucumber (Gy14) v2	cgybcpiB169
CSPI04G27340	Carg08595	Silver-seed gourd	carcpiB0118

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G27340	Cucurbita pepo (Zucchini)	cpecpiB573
CSPI04G27340	Silver-seed gourd	carcpiB0393
CSPI04G27340	Cucumber (Chinese Long) v3	cpicucB245
CSPI04G27340	Wild cucumber (PI 183967)	cpicpiB166
CSPI04G27340	Cucurbita maxima (Rimu)	cmacpiB467
CSPI04G27340	Cucurbita moschata (Rifu)	cmocpiB456
CSPI04G27340	Cucumber (Chinese Long) v2	cpicuB204
CSPI04G27340	Watermelon (Charleston Gray)	cpiwcgB290