CsaV3_4G037740 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G037740
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	chr4 : 26342869 .. 26346713 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTTCTCCAGTTATTTGGCTGGGAACAAGCACCAAACCTTGATTGTCGGAATGGCGGATGTGAAGGGATTGTTGGAGGTGTCATCCACCAAATAGGTATTTGCAATTGAGTCGGGTTTAATTGTAATTGAACAAGATGTTTTTGAATATCGTTAGAATTATAGGAGTAAATATCAGGAGACTCTTATCTCTTCAAGTTGGAACTACTTCGGTGAGAACATGCAGTAGATGAGCACTTCTCTGACAACACATTCAGGTGAAGGAAGTTTGTAAACTAACTTTCTACTATTATGATGAAAGTCCCATACACAAATATGGATATAGCCAAACGTCTAGCCAACTCATAACAGAATGAGGAAGCTAACTATGACCAAGTAAAACAAACTAACAACATGTAGTTAATAAAAGTAAGACTTTTGTTATTTCTTTTTAATATTTGTGAATTCTAAACCCAACATCACAAATCTTGACTCTTCTCATAGAACAACCGTCTGACTCTACTATACTTGGGTTCTATTGGCTACAGTGAAATATTTGCTAATTGCTACTATAATTCTTCTTCTAGTTAACTTATCATGAATGTTCCAATTCAAAATTTGGATACCTGTTTAATTTTTTAAGTTTCATTGTAGAATTGGGTCAGTAGTATTCTTAAATATTTATTTCATTTGGTTTCATTTGATTGTCTAGCATCTTTCATGTTCTGCAAACTTTCTTCATTCTTGAAATTGAGTACATGGCTATTATCTTTTGATCGTAGTAATTTACATTGTATTGGATGTGGTATTATAAATTATTATTTTTCCAACTATGAATGTTTAACGGCGTAAACAAATAGTACATTTTAATCCAATTGGGTTGTGTTGTAAATACTATTCTATTGGTGAATAATTGCAGCTCGTGGTATGGAGAAGAGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGGTTTGAGTGAGGATCCTGTGGCTTTCCAGAAATTCTTCAAGTATATTGAGCTTCTTTAGCCTGAATTTTTTTCTCAGCAGTTCCTTTTTTCCCCAATATCTGGAATCATATGTAGATGCAATAGTGCATATCATAAGAGAGTGATTATTTTGACTTGTGAATTGGCTGGTCAACAAAGTGATGACATAGTGATGATTAGGCAGATAAGCTGTGAGAGTAACAAAATGATTCTGCACAATATAATATAGACATCACCTGAAAATGATCCCTGAATAAATATCCACATATTTGTTAGCTATGATACAAAACTCGCATTCTGCACAGCTTGCTATCCAATTTTGACGATATTTGAGCTATTCCATATGCAATATAACTTTGCAGTCCTAATTATCTCCAATAATAGCAACTCTTGTTGAATGTATCTATTTCTTTTAATTGTTTTTTTCTTTTTGAATTTTTCATCAATAATTGATCTGTTTACTCAATCTTACTTCAGCTTTGAAATATTGCATGCTCGTTGGGCTATGTTAGCATCCCTAGGTGCTTTAGTTCCAGAGATCTTGGATATTTTTGGAGCTTTTCATTTCACTGAACCCATCTGGTGGCGAGTGGGCTATTCAAAACTTAAGGTTTGTTTTCTAGCACTTGGTCAACCATTTTTTTGGAGATTTATTTCATAAATTCTTGATCGTATGTTTGCTTGTTTTGTTTCCATGTTTTTACCCTTTTGTCTGGTTATATTTCCACTGCTATCAAATTGTTGTTTTGCTCTTGTTGAATCATGTTTTATTTCAAAGTCTAGTTTTGTCTGCCTTTATTAATGAAATGAAATAATAACGATTATGGCTTCATATATTTCAGAGCCGTGGTAAGCTTGAGTTGCTGCTGCCTTACTTCTATTTCATTTAATCTTCCATTACCGTGTGATCTCGGGAGAAATAGTGGTTCATCAATTTTAATTTCATTTTAACTATCTTGTGTACTATTCCCTGTAAACAGAGGGCTCTCCCATGTATTTGAAGAGAACTGAATCATATTCCCTTTTTTTAGAAACTCCATGGGTGTGTGTAGTTCCTCAATCCACATTCATTACCTATGACTTTCCAGCACTTGTAACTGACTCTTTTTCATGTTACTGTTTGTGTTCTCTTTCCACCAGGGAGATACACTCGACTATCTTGGAATACCAGGGCTTCACTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCCATTTTGATGGTAACTTATGACAAACAATCTTATTTTCTGTGGTCTGGTATTTTACTTGTCATATCTTTTGGGCAGTTTAATTAATGGCATGAATGGTTTAGGAAGTGTGACGCTATAATCTGTCCTGTTTTGGGTTTAAACCAGTGTTAAGTTGAGTTGGTTAATCTCAATCAATTCTCATCCATTCCCACAAGAACACAAGTGTTGTGGCTCCCCATGCAGTCTCTACAACGAGCACTGGCCCTTGATAAGCTTGTTGAGGAACTTGGAATTTAAATTATTCTTTTGGAAATCGATCCTTTTGGAGATTATTCAAGTTAGAAAAAAGAGACTTTTGCTGAAGAAAAAAGTTCAAAGATATAAACCTCCAGATGGGGCGAAAGGGAAAACATAATGCCTAAAGAAAAAGGATTACAAGAAACCAAAACAAGCCAAACAAAAAGAAGGAACTAAAGAATCGCCAACAATCAACAAAAAATGCAAAACTAGAAGATCGAAGTGCCAACCTTTTAGATGGCTTTCAAATGAAAGCTAAAACATTAACGGGAATCTCCTCAAATCGCTGAAGCTTCAAATAGAAACCGCACCAACCCACTTGAAACATCACACCAGAAAAGGAAGAAAAGCAGCATCTGCCATGGAGAAATGCATGAACACCAAGGGGACGAACAACCAAAACCTCTATTAAGTGCAAATCTTAACTGCAAAAAACACTAGAAGAAGCATCAGCTTCACCCAAGAACTAAAAACTGAAGAGCAAAACAAAAAATATCCACCAAAGACAAAATCAATGCAAAAAGATAATGGAACCAAAGTCCAAAATCCCATCCTCATAGATTTAATGCCATATTTCTCTAGAAAGGAATGAAGTTTTTCCTTTTCATGGAATGTTTTGATGAGAGGGGGGAGATAAAGAACTATCTGACTGCTACTTTAAAGGTAAATTAATATTGTCTTCTTGAAAAATAGAACAAAGAGCTTCGTTAAAATCCTCGTCATCAGGGGCCTCGTCAGTCGTCAGTCGTAAGAAACCTTTTCATGCGATTAACAATTGGAAAATTGAACTCCAAGTCATAACTACTAAGACTTATTCGATTCCTCACTTTTCTTCATAAAAAAATAACTTTTTGGTGATCCCATTGAGTTATATAATATCCATAGAAAGAGTGTTATTAACTAAGGATGTTGAAGAATTAGATAGTCTATTGTTAAGAGAGCGTATTAAACTATTATATGTCTGATTGTTCTTACAACTGTGTGATGTAAGTTAAAATGTAAATAGGTTGGACCCGAATATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGATCCCTTGAATCTGTCCAAGGATGCTGCAGCCTTTGAGGAACTAAAAGTAAAAGAGATTAAAAATGGGCGTTTAGCCATGGTTGCCTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTAAGGGACCAGTCCAAAACCTTCTTGACCACATTGCAGATCCTTTCCACAATAACTTTCTTTCCCTGCTCAATTCTTCATTTAGTCGTTAA

mRNA sequence

ATGAAGTTTCTCCAGTTATTTGGCTGGGAACAAGCACCAAACCTTGATTGTCGGAATGGCGGATGTGAAGGGATTGTTGGAGGTGTCATCCACCAAATAGTAGATGAGCACTTCTCTGACAACACATTCAGCTCGTGGTATGGAGAAGAGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGGTTTGAGTGAGGATCCTGTGGCTTTCCAGAAATTCTTCAACTTTGAAATATTGCATGCTCGTTGGGCTATGTTAGCATCCCTAGGTGCTTTAGTTCCAGAGATCTTGGATATTTTTGGAGCTTTTCATTTCACTGAACCCATCTGGTGGCGAGTGGGCTATTCAAAACTTAAGGGAGATACACTCGACTATCTTGGAATACCAGGGCTTCACTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCCATTTTGATGGTTGGACCCGAATATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGATCCCTTGAATCTGTCCAAGGATGCTGCAGCCTTTGAGGAACTAAAAGTAAAAGAGATTAAAAATGGGCGTTTAGCCATGGTTGCCTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTAAGGGACCAGTCCAAAACCTTCTTGACCACATTGCAGATCCTTTCCACAATAACTTTCTTTCCCTGCTCAATTCTTCATTTAGTCGTTAA

Coding sequence (CDS)

ATGAAGTTTCTCCAGTTATTTGGCTGGGAACAAGCACCAAACCTTGATTGTCGGAATGGCGGATGTGAAGGGATTGTTGGAGGTGTCATCCACCAAATAGTAGATGAGCACTTCTCTGACAACACATTCAGCTCGTGGTATGGAGAAGAGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGGTTTGAGTGAGGATCCTGTGGCTTTCCAGAAATTCTTCAACTTTGAAATATTGCATGCTCGTTGGGCTATGTTAGCATCCCTAGGTGCTTTAGTTCCAGAGATCTTGGATATTTTTGGAGCTTTTCATTTCACTGAACCCATCTGGTGGCGAGTGGGCTATTCAAAACTTAAGGGAGATACACTCGACTATCTTGGAATACCAGGGCTTCACTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCCATTTTGATGGTTGGACCCGAATATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGATCCCTTGAATCTGTCCAAGGATGCTGCAGCCTTTGAGGAACTAAAAGTAAAAGAGATTAAAAATGGGCGTTTAGCCATGGTTGCCTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTAAGGGACCAGTCCAAAACCTTCTTGACCACATTGCAGATCCTTTCCACAATAACTTTCTTTCCCTGCTCAATTCTTCATTTAGTCGTTAA

Protein sequence

MKFLQLFGWEQAPNLDCRNGGCEGIVGGVIHQIVDEHFSDNTFSSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSSFSR

Homology

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BLAST of CsaV3_4G037740 vs. NCBI nr
Match: KGN55550.1 (hypothetical protein Csa_4G664570 [Cucumis sativus])

HSP 1 Score: 575.1 bits (1481), Expect = 1.3e-160
Identity = 271/274 (98.91%), Postives = 271/274 (98.91%), Query Frame = 0


Query: 1   MKFLQLFGWEQAPNLDCRNGGCEGIVGGVIHQI---VDEHFSDNTFSSWYGEERPRWLGP 60
           MKFLQLFGWEQAPNLDCRNGGCEGIVGGVIHQI   VDEHFSDNTFSSWYGEERPRWLGP
Sbjct: 1   MKFLQLFGWEQAPNLDCRNGGCEGIVGGVIHQIEHAVDEHFSDNTFSSWYGEERPRWLGP 60

Query: 61  LPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDI 120
           LPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDI
Sbjct: 61  LPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDI 120

Query: 121 FGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYC 180
           FGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYC
Sbjct: 121 FGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYC 180

Query: 181 GIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ 240
           GIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ
Sbjct: 181 GIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ 240

Query: 241 AALTGKGPVQNLLDHIADPFHNNFLSLLNSSFSR 272
           AALTGKGPVQNLLDHIADPFHNNFLSLLNSSFSR
Sbjct: 241 AALTGKGPVQNLLDHIADPFHNNFLSLLNSSFSR 274

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BLAST of CsaV3_4G037740 vs. NCBI nr
Match: XP_004145567.1 (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 483.4 bits (1243), Expect = 5.0e-133
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM
Sbjct: 111 SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 170

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC
Sbjct: 171 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 230

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN
Sbjct: 231 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 290

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSSFSR 272
           GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSSFSR
Sbjct: 291 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSSFSR 338

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BLAST of CsaV3_4G037740 vs. NCBI nr
Match: XP_008453032.2 (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo])

HSP 1 Score: 475.3 bits (1222), Expect = 1.4e-130
Identity = 223/225 (99.11%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQK+FNFEILHARWAM
Sbjct: 147 SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAM 206

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC
Sbjct: 207 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 266

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN
Sbjct: 267 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 326

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSS 269
           GRLAMVAWLGFYSQAALTGKGPVQNLLDHI+DPFHNNFLSLLNSS
Sbjct: 327 GRLAMVAWLGFYSQAALTGKGPVQNLLDHISDPFHNNFLSLLNSS 371

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BLAST of CsaV3_4G037740 vs. NCBI nr
Match: XP_022936160.1 (chlorophyll a-b binding protein 7, chloroplastic [Cucurbita moschata])

HSP 1 Score: 468.0 bits (1203), Expect = 2.2e-128
Identity = 217/225 (96.44%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           SSWYGE+RPRWLGPLPY+YPKYLTGELPGDYGFDIAGLSEDPVAF+K+FNFEILHARWAM
Sbjct: 113 SSWYGEKRPRWLGPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAM 172

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC
Sbjct: 173 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 232

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN
Sbjct: 233 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 292

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSS 269
           GRLAMVAWLGFYSQAALTGKGP+QNLL+H++DPFHNNFLSLLNSS
Sbjct: 293 GRLAMVAWLGFYSQAALTGKGPIQNLLEHVSDPFHNNFLSLLNSS 337

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BLAST of CsaV3_4G037740 vs. NCBI nr
Match: XP_023521109.1 (chlorophyll a-b binding protein 7, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 468.0 bits (1203), Expect = 2.2e-128
Identity = 217/225 (96.44%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           SSWYGE+RPRWLGPLPY+YPKYLTGELPGDYGFDIAGLSEDPVAF+K+FNFEILHARWAM
Sbjct: 113 SSWYGEKRPRWLGPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAM 172

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC
Sbjct: 173 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 232

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN
Sbjct: 233 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 292

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSS 269
           GRLAMVAWLGFYSQAALTGKGP+QNLL+H++DPFHNNFLSLLNSS
Sbjct: 293 GRLAMVAWLGFYSQAALTGKGPIQNLLEHVSDPFHNNFLSLLNSS 337

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BLAST of CsaV3_4G037740 vs. TAIR10
Match: AT1G76570.1 (Chlorophyll A-B binding family protein)

HSP 1 Score: 412.9 bits (1060), Expect = 1.5e-115
Identity = 180/224 (80.36%), Postives = 205/224 (91.52%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           S WYG+ERPRW GP+PYDYP YLTGELPGDYGFDIAGL +D + F K+FNFEILHARWAM
Sbjct: 104 SKWYGKERPRWFGPIPYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAM 163

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           LA+LGAL+PE+ D+ G FHF EP+WWRVGYSKL+G+TL+YLGIPGLH+AGSQGVIVIAIC
Sbjct: 164 LAALGALIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAIC 223

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           Q +LMVGPEYARYCGIEALEPLGIYLPGDINYPGG LFDPLNLS+D  AFE+LKVKEIKN
Sbjct: 224 QVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKN 283

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNS 268
           GRLAMVAWLGFY+QAA TGKGPVQNL+DH++DP HNN +++L +
Sbjct: 284 GRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLIAMLQT 327

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BLAST of CsaV3_4G037740 vs. TAIR10
Match: AT3G27690.1 (photosystem II light harvesting complex gene 2.3)

HSP 1 Score: 212.2 bits (539), Expect = 3.9e-55
Identity = 113/217 (52.07%), Postives = 138/217 (63.59%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           S WYG +RP++LGP   + P YLTGE PGDYG+D AGLS DP  F K    E++H+RWAM
Sbjct: 48  SIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 107

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           L +LG   PEIL   G   F E +W++ G        LDYLG P  +L  +Q ++ I  C
Sbjct: 108 LGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAC 167

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           Q +LM   E  R  G     PLG  L  D  YPGG  FDPLNL++D  AF ELKVKE+KN
Sbjct: 168 QVVLMGFIEGYRIGG----GPLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKN 227

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNN 261
           GRLAM +  GF+ QA +TGKGP++NL DHIADP  NN
Sbjct: 228 GRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 254

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BLAST of CsaV3_4G037740 vs. TAIR10
Match: AT2G05100.1 (photosystem II light harvesting complex gene 2.1)

HSP 1 Score: 207.6 bits (527), Expect = 9.6e-54
Identity = 111/217 (51.15%), Postives = 137/217 (63.13%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           S WYG +RP++LGP   + P YLTGE PGDYG+D AGLS DP  F K    E++H+RWAM
Sbjct: 47  SIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           L +LG   PEIL   G   F E +W++ G        LDYLG P  +L  +Q ++ I   
Sbjct: 107 LGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAV 166

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           Q +LM   E  R  G     PLG  L  D  YPGG  FDPLNL++D  AF ELKVKE+KN
Sbjct: 167 QVVLMGFIEGYRIGG----GPLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKN 226

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNN 261
           GRLAM +  GF+ QA +TGKGP++NL DH+ADP  NN
Sbjct: 227 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253

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BLAST of CsaV3_4G037740 vs. TAIR10
Match: AT2G05070.1 (photosystem II light harvesting complex gene 2.2)

HSP 1 Score: 207.6 bits (527), Expect = 9.6e-54
Identity = 111/217 (51.15%), Postives = 137/217 (63.13%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           S WYG +RP++LGP   + P YLTGE PGDYG+D AGLS DP  F K    E++H+RWAM
Sbjct: 47  SIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           L +LG   PEIL   G   F E +W++ G        LDYLG P  +L  +Q ++ I   
Sbjct: 107 LGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAV 166

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           Q +LM   E  R  G     PLG  L  D  YPGG  FDPLNL++D  AF ELKVKE+KN
Sbjct: 167 QVVLMGFIEGYRIGG----GPLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKN 226

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNN 261
           GRLAM +  GF+ QA +TGKGP++NL DH+ADP  NN
Sbjct: 227 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253

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BLAST of CsaV3_4G037740 vs. TAIR10
Match: AT5G54270.1 (light-harvesting chlorophyll B-binding protein 3)

HSP 1 Score: 204.9 bits (520), Expect = 6.2e-53
Identity = 102/215 (47.44%), Postives = 132/215 (61.40%), Query Frame = 0


Query: 46  WYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLA 105
           WYG +R ++LGP     P YLTGE PGDYG+D AGLS DP AF K    E++H RWAML 
Sbjct: 47  WYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLG 106

Query: 106 SLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQA 165
           + G + PE+L  +    F EP+W++ G        LDYLG P  +L  +Q ++ +   Q 
Sbjct: 107 AFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAVLGFQV 166

Query: 166 ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGR 225
           ILM   E  R  G++ +        G+  YPGG  FDPL L+ D   F ELKVKEIKNGR
Sbjct: 167 ILMGLVEGFRINGLDGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGR 226

Query: 226 LAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNN 261
           LAM +  GF+ QA +TGKGP++NLLDH+ +P  NN
Sbjct: 227 LAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253

[Close]

BLAST of CsaV3_4G037740 vs. Swiss-Prot
Match: sp|Q9C9K1|CB7_ARATH (Chlorophyll a-b binding protein 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB7 PE=2 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 2.7e-114
Identity = 180/224 (80.36%), Postives = 205/224 (91.52%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           S WYG+ERPRW GP+PYDYP YLTGELPGDYGFDIAGL +D + F K+FNFEILHARWAM
Sbjct: 104 SKWYGKERPRWFGPIPYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAM 163

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           LA+LGAL+PE+ D+ G FHF EP+WWRVGYSKL+G+TL+YLGIPGLH+AGSQGVIVIAIC
Sbjct: 164 LAALGALIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAIC 223

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           Q +LMVGPEYARYCGIEALEPLGIYLPGDINYPGG LFDPLNLS+D  AFE+LKVKEIKN
Sbjct: 224 QVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKN 283

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNS 268
           GRLAMVAWLGFY+QAA TGKGPVQNL+DH++DP HNN +++L +
Sbjct: 284 GRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLIAMLQT 327

[Close]

BLAST of CsaV3_4G037740 vs. Swiss-Prot
Match: sp|Q9XF87|CB24_ARATH (Chlorophyll a-b binding protein 2.4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB2.4 PE=1 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 7.1e-54
Identity = 113/217 (52.07%), Postives = 138/217 (63.59%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           S WYG +RP++LGP   + P YLTGE PGDYG+D AGLS DP  F K    E++H+RWAM
Sbjct: 48  SIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 107

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           L +LG   PEIL   G   F E +W++ G        LDYLG P  +L  +Q ++ I  C
Sbjct: 108 LGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAC 167

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           Q +LM   E  R  G     PLG  L  D  YPGG  FDPLNL++D  AF ELKVKE+KN
Sbjct: 168 QVVLMGFIEGYRIGG----GPLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKN 227

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNN 261
           GRLAM +  GF+ QA +TGKGP++NL DHIADP  NN
Sbjct: 228 GRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 254

[Close]

BLAST of CsaV3_4G037740 vs. Swiss-Prot
Match: sp|P12470|CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 GN=CABE PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.5e-53
Identity = 110/217 (50.69%), Postives = 137/217 (63.13%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           S WYG +R ++LGP   + P YLTGE PGDYG+D AGLS DP  F K    E++H RWAM
Sbjct: 48  SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 107

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           L +LG + PE+L   G   F E +W++ G        LDYLG P   L  +Q ++ I  C
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWAC 167

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           Q +LM   E  R  G    EPLG  +  D  YPGG  FDPL L++D  AF ELKVKEIKN
Sbjct: 168 QVVLMGAVEGYRVAG----EPLGEVV--DPLYPGG-SFDPLGLAEDPEAFAELKVKEIKN 227

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNN 261
           GRLAM +  GF+ QA +TGKGP++NL DH+ADP +NN
Sbjct: 228 GRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNN 254

[Close]

BLAST of CsaV3_4G037740 vs. Swiss-Prot
Match: sp|P22686|CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii OX=3054 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.6e-53
Identity = 105/215 (48.84%), Postives = 131/215 (60.93%), Query Frame = 0


Query: 46  WYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLA 105
           WYG +R +WLGP   + P YLTGE PGDYG+D AGLS DP  F+K+   E++HARWA+L 
Sbjct: 39  WYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLG 98

Query: 106 SLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQA 165
           +LG L PE+L  +    F EP+W++ G        LDYLG P   L  +Q ++     Q 
Sbjct: 99  ALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPA--LIHAQNIVATLAVQV 158

Query: 166 ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGR 225
           +LM   E  R  G  A E L    PG+        FDPL L+ D   F ELKVKEIKNGR
Sbjct: 159 VLMGLIEGYRVNGGPAGEGLDPLYPGE-------SFDPLGLADDPDTFAELKVKEIKNGR 218

Query: 226 LAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNN 261
           LAM +  GF+ QA +TGKGP+QNL DH+ADP  NN
Sbjct: 219 LAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNN 244

[Close]

BLAST of CsaV3_4G037740 vs. Swiss-Prot
Match: sp|P27518|CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum OX=3635 GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 209.1 bits (531), Expect = 6.0e-53
Identity = 112/217 (51.61%), Postives = 135/217 (62.21%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           S WYG +RP++LGP     P YLTGE PGDYG+D AGLS DP  F K    E++H RWAM
Sbjct: 47  SIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 106

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           L +LG + PEIL   G   F E +W++ G        LDYLG P  +L  +Q ++ I  C
Sbjct: 107 LGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAC 166

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           Q +LM   E  R  G     PLG  L  D  YPGG  FDPL L+ D  AF ELKVKEIKN
Sbjct: 167 QVVLMGFVEGYRVGG----GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKEIKN 226

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNN 261
           GRLAM +  GF+ QA +TGKGP++NL DH+ADP  NN
Sbjct: 227 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253

[Close]

BLAST of CsaV3_4G037740 vs. TrEMBL
Match: tr|A0A0A0L0U5|A0A0A0L0U5_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_4G664570 PE=3 SV=1)

HSP 1 Score: 575.1 bits (1481), Expect = 8.4e-161
Identity = 271/274 (98.91%), Postives = 271/274 (98.91%), Query Frame = 0


Query: 1   MKFLQLFGWEQAPNLDCRNGGCEGIVGGVIHQI---VDEHFSDNTFSSWYGEERPRWLGP 60
           MKFLQLFGWEQAPNLDCRNGGCEGIVGGVIHQI   VDEHFSDNTFSSWYGEERPRWLGP
Sbjct: 1   MKFLQLFGWEQAPNLDCRNGGCEGIVGGVIHQIEHAVDEHFSDNTFSSWYGEERPRWLGP 60

Query: 61  LPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDI 120
           LPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDI
Sbjct: 61  LPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDI 120

Query: 121 FGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYC 180
           FGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYC
Sbjct: 121 FGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYC 180

Query: 181 GIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ 240
           GIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ
Sbjct: 181 GIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ 240

Query: 241 AALTGKGPVQNLLDHIADPFHNNFLSLLNSSFSR 272
           AALTGKGPVQNLLDHIADPFHNNFLSLLNSSFSR
Sbjct: 241 AALTGKGPVQNLLDHIADPFHNNFLSLLNSSFSR 274

[Close]

BLAST of CsaV3_4G037740 vs. TrEMBL
Match: tr|A0A1S3BWE1|A0A1S3BWE1_CUCME (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493859 PE=3 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 9.0e-131
Identity = 223/225 (99.11%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQK+FNFEILHARWAM
Sbjct: 147 SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAM 206

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC
Sbjct: 207 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 266

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN
Sbjct: 267 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 326

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSS 269
           GRLAMVAWLGFYSQAALTGKGPVQNLLDHI+DPFHNNFLSLLNSS
Sbjct: 327 GRLAMVAWLGFYSQAALTGKGPVQNLLDHISDPFHNNFLSLLNSS 371

[Close]

BLAST of CsaV3_4G037740 vs. TrEMBL
Match: tr|A0A2I4GGQ1|A0A2I4GGQ1_9ROSI (Chlorophyll a-b binding protein, chloroplastic OS=Juglans regia OX=51240 GN=LOC109007729 PE=3 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 1.6e-119
Identity = 198/224 (88.39%), Postives = 212/224 (94.64%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           S WYGEERPRWLGPLP+DYP YLTGELPGDYGFD+AGL +DPVAFQK+FNFEILHARWAM
Sbjct: 103 SMWYGEERPRWLGPLPFDYPAYLTGELPGDYGFDVAGLGKDPVAFQKYFNFEILHARWAM 162

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           LA+LGALVPE+LDI GAFHF EP+WWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC
Sbjct: 163 LAALGALVPEVLDILGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 222

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           QA+LMVGPEYAR+CGIEALEPLGIYLPGDINYPGG LFDPLNLS+D   FEELKVKEIKN
Sbjct: 223 QALLMVGPEYARFCGIEALEPLGIYLPGDINYPGGALFDPLNLSRDPETFEELKVKEIKN 282

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNS 268
           GRLAMVAWLGFY QAALTGKGPVQNLL+HI+DPFHNN L++L S
Sbjct: 283 GRLAMVAWLGFYMQAALTGKGPVQNLLEHISDPFHNNLLTILKS 326

[Close]

BLAST of CsaV3_4G037740 vs. TrEMBL
Match: tr|A0A2P6PC04|A0A2P6PC04_ROSCH (Chlorophyll a-b binding protein, chloroplastic OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0217391 PE=3 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 1.6e-119
Identity = 198/223 (88.79%), Postives = 211/223 (94.62%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           S WYGEERPRWLGP+PYDYP YLTGELPGDYGFD+ GLS+DPVAFQ++FNFEILHARWAM
Sbjct: 103 SLWYGEERPRWLGPIPYDYPAYLTGELPGDYGFDVVGLSKDPVAFQRYFNFEILHARWAM 162

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           LA+ GALVPEILD+ GAFHF EP+WWRVGYSKLKGDTLDYLGIPGLH+AGSQGVIVIAIC
Sbjct: 163 LAAFGALVPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGLHVAGSQGVIVIAIC 222

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           Q +LMVGPEYARYCGIEALEPLGIYLPGDINYPGG LFDPLNLSKD  AFEELKVKEIKN
Sbjct: 223 QVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGELFDPLNLSKDPVAFEELKVKEIKN 282

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLN 267
           GRLAMVAWLGFYSQAALTGKGPVQNLL+HI+DP HNN LS+LN
Sbjct: 283 GRLAMVAWLGFYSQAALTGKGPVQNLLEHISDPLHNNLLSILN 325

[Close]

BLAST of CsaV3_4G037740 vs. TrEMBL
Match: tr|A0A2C9UIB2|A0A2C9UIB2_MANES (Chlorophyll a-b binding protein, chloroplastic OS=Manihot esculenta OX=3983 GN=MANES_15G159000 PE=3 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 2.1e-119
Identity = 198/223 (88.79%), Postives = 212/223 (95.07%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           S WYGEERPRWLGP+PYDYP YLTGELPGDYGFD+AGL +D VAFQ++FNFEILHARWAM
Sbjct: 111 SLWYGEERPRWLGPIPYDYPAYLTGELPGDYGFDVAGLGKDSVAFQRYFNFEILHARWAM 170

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           LA+LGALVPE+LD+ GAFHFTEP+WW VGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC
Sbjct: 171 LAALGALVPELLDLLGAFHFTEPVWWLVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 230

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           QA+LMVGPEYARYCGIEALEPLGIYLPGDINYPGG LFDPLNLS D  AF+ELKVKEIKN
Sbjct: 231 QALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSSDPVAFQELKVKEIKN 290

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLN 267
           GRLAMVAWLGFY+QAALTGKGPVQNLLDHI+DPFHNN LS+LN
Sbjct: 291 GRLAMVAWLGFYAQAALTGKGPVQNLLDHISDPFHNNLLSVLN 333

The following BLAST results are available for this feature:

BLAST of CsaV3_4G037740 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55550.1	1.3e-160	98.91	hypothetical protein Csa_4G664570 [Cucumis sativus]	[more]
XP_004145567.1	5.0e-133	100.00	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X1 [Cucu...	[more]
XP_008453032.2	1.4e-130	99.11	PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis m...	[more]
XP_022936160.1	2.2e-128	96.44	chlorophyll a-b binding protein 7, chloroplastic [Cucurbita moschata]	[more]
XP_023521109.1	2.2e-128	96.44	chlorophyll a-b binding protein 7, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_4G037740 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76570.1	1.5e-115	80.36	Chlorophyll A-B binding family protein	[more]
AT3G27690.1	3.9e-55	52.07	photosystem II light harvesting complex gene 2.3	[more]
AT2G05100.1	9.6e-54	51.15	photosystem II light harvesting complex gene 2.1	[more]
AT2G05070.1	9.6e-54	51.15	photosystem II light harvesting complex gene 2.2	[more]
AT5G54270.1	6.2e-53	47.44	light-harvesting chlorophyll B-binding protein 3	[more]

BLAST of CsaV3_4G037740 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C9K1\|CB7_ARATH	2.7e-114	80.36	Chlorophyll a-b binding protein 7, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
sp\|Q9XF87\|CB24_ARATH	7.1e-54	52.07	Chlorophyll a-b binding protein 2.4, chloroplastic OS=Arabidopsis thaliana OX=37...	[more]
sp\|P12470\|CB25_NICPL	3.5e-53	50.69	Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia OX...	[more]
sp\|P22686\|CB2_CHLMO	4.6e-53	48.84	Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas ...	[more]
sp\|P27518\|CB21_GOSHI	6.0e-53	51.61	Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum OX=3635...	[more]

BLAST of CsaV3_4G037740 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0U5\|A0A0A0L0U5_CUCSA	8.4e-161	98.91	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
tr\|A0A1S3BWE1\|A0A1S3BWE1_CUCME	9.0e-131	99.11	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A2I4GGQ1\|A0A2I4GGQ1_9ROSI	1.6e-119	88.39	Chlorophyll a-b binding protein, chloroplastic OS=Juglans regia OX=51240 GN=LOC1...	[more]
tr\|A0A2P6PC04\|A0A2P6PC04_ROSCH	1.6e-119	88.79	Chlorophyll a-b binding protein, chloroplastic OS=Rosa chinensis OX=74649 GN=Rch...	[more]
tr\|A0A2C9UIB2\|A0A2C9UIB2_MANES	2.1e-119	88.79	Chlorophyll a-b binding protein, chloroplastic OS=Manihot esculenta OX=3983 GN=M...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009765	photosynthesis, light harvesting

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0015996	chlorophyll catabolic process
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G037740.1	CsaV3_4G037740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 63..238 e-value: 7.4E-42 score: 143.5
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	G3DSA:1.10.3460.10		coord: 53..265 e-value: 2.8E-67 score: 228.4
None	No IPR available	PANTHER	PTHR21649:SF24	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 43..264
None	No IPR available	SUPERFAMILY	SSF103511	Chlorophyll a-b binding protein	coord: 45..267
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 43..264

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G037740	CSPI04G27350	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G037740	Cucsa.272510	Cucumber (Gy14) v1	cgycucB415
CsaV3_4G037740	CmaCh09G000120	Cucurbita maxima (Rimu)	cmacucB0031
CsaV3_4G037740	CmoCh09G000130	Cucurbita moschata (Rifu)	cmocucB0020
CsaV3_4G037740	Cp4.1LG00g04030	Cucurbita pepo (Zucchini)	cpecucB0015
CsaV3_4G037740	CsGy4G025660	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G037740	Cla000513	Watermelon (97103) v1	cucwmB294
CsaV3_4G037740	ClCG11G019140	Watermelon (Charleston Gray)	cucwcgB289

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G037740	Cucumber (Chinese Long) v3	cuccucB187
CsaV3_4G037740	Silver-seed gourd	carcucB0122
CsaV3_4G037740	Silver-seed gourd	carcucB0392
CsaV3_4G037740	Silver-seed gourd	carcucB1094
CsaV3_4G037740	Cucurbita maxima (Rimu)	cmacucB0554
CsaV3_4G037740	Cucurbita moschata (Rifu)	cmocucB0540
CsaV3_4G037740	Cucurbita moschata (Rifu)	cmocucB0558
CsaV3_4G037740	Cucurbita pepo (Zucchini)	cpecucB0708
CsaV3_4G037740	Cucurbita pepo (Zucchini)	cpecucB0709
CsaV3_4G037740	Cucurbita pepo (Zucchini)	cpecucB0978
CsaV3_4G037740	Bottle gourd (USVL1VR-Ls)	cuclsiB307
CsaV3_4G037740	Melon (DHL92) v3.5.1	cucmeB316
CsaV3_4G037740	Melon (DHL92) v3.6.1	cucmedB308
CsaV3_4G037740	Watermelon (97103) v1	cucwmB370
CsaV3_4G037740	Watermelon (97103) v2	cucwmbB282
CsaV3_4G037740	Watermelon (97103) v2	cucwmbB283
CsaV3_4G037740	Wax gourd	cucwgoB423
CsaV3_4G037740	Wax gourd	cucwgoB426