Cucsa.272510 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGATGTGAAGGGATTGTTGGAGGTGTCATCCACCAAATAGTTATTTGCAATTGAGTCGGGTTTAATTGTAATTGAACAAGATGTTTTTGAATATCGTTAGAATTATAGGAGTAAATATCAGGAGACTCTTATCTCTTCAAGTTGGAACTACTTCGGTGAGAACATGCAGTAGATGAGCACTTCTCTGACAACACATTCAGGTGAAGGAAGTTTGTAAACTAACTTTCTACTATTATGATGAAAGTCCCATACGCAAATATGGATATAGCCAAACGTCTAGCCAACTCATAACAGAATGAGGAAGCTAACTATGACCAAGTAAAACAAACTAACAACATGTAGTTAATAAAAGTAAGACTTTTGTTATTTCTTTTTAATATTTGTGAATTCTAAACCCAACATCACAAATCTTGACTCTTCTCATAGAACAACCGTCTGACTCTACTATACTTGGGTTCTATTGACTACAGTGAAATATTTGCTAATTGCTACTATAATTCTTCTTCTAGTTAACTTATCATGAATGTTCCAATTCAAAATTTGGATACCTGTTTAATTTTTtAAGTTTCATTGTAGAATTGGGTCAGTAGTATTCTTAAATATTTATTTCATTTGGTTTCATTTGATTGTCTAGCATCTTTCATGTTCTGCAAACTTTCTTCATTCTTGAAATTGAGTACATGGCTATTATCTTTTGATCGTAGTAATTTACATTGTATTGGATGTGGTATTATAAATTATTATTTTTCCAACTATGAATGTTTAACGGCGTAAACAAATAGTACATTTTAATCCAATTGGGTTGTGTTGTAAATACTATTCTATTGGTGAATAATTGCAGCTCGTGGTATGGAGAAGAGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGGTTTGAGTGAGGATCCTGTGGCTTTCCAGAAATTCTTCAAGTATATTGAGCTTCTTTAGCCTGAATTTTTTtCTCAGCAGTTCCTTTTTtCCCCAATATCTGGAATCATATGTAGATGCAATAGTGCATATCATAAGAGAGTGATTATTTTGACTTGTGAATTGGCTGGTCTACAAAGTGATGACATAGTGATGATTAGGCAGATAAGCTGTGAGAGTAACAAAATGATTCTGCACAATATAATATAGACATCACCTTAAAATGATCCCTGAATAAATATCCACATATTTGTTAGCTATGATACAAAACTCGCATTCTGCACAGCTTGCTATCCAATTTTGACGATATTTGAGCTATTCCATATGCAATATAACTTTGCAGTCCTAATTATCTCCAATAATAGCAACTCTTGTTGAATGTATCTATTTCTTTTAATAGTTTTTTtCTTTTTGAATTTTTCATCAATAATTGATCTGTTTACTCAATCTTACTTCAGCTTTGAAATATTGCATGCTCGTTGGGCTATGTTAGCATCCCTAGGTGCTTTAGTTCCAGAGATCTTGGATATTTTTGGAGCTTTTCATTTCACTGAACCCATCTGGTGGCGAGTGGGCTATTCAAAACTTAAGGTTTGTTTTCTAGCACTTGGTCAACCATTTTTTTGGAGATTTATTTCATAAATTCTTGATCGTATGTTTGCTTGTTTTGTTTCCATGTTTTtACCCTTTTGTCTGGTTATATTTCCACTGCTATCAAATTGTTGTTTTGCTCTTGTTGAATCATGTTTTATTTCAAAGTCTAGTTTTGTCTGCCTTTATTAATGAAATGAAATAATAACGATTATGGCTTCATATCTTTCAGAGCCGTGGTAAGCTTGAGTTGCTGCTGCCTTACTTCTATTTCATTTAATCTTCCATTACCGTGTGATCTCGGGAGAAATAGTGGTTCATCAATTTTAATTTCATTTTAACTATCTTGTGTACTATTCCCTGTAAACAGAGGGCTCTCCCATGTATTTGAAGAGAACTGAATCATATTCCCTTTTTTTAGAAACTCCATGGGTGTGTGTAGTTCCTCAATCCACATTCATTACCTATGACTTTCCAGCACTTGTAACTGACTCTTTTTCATGTTACTGTTTGTGTTCTCTTTCCACCAGGGAGATACACTCGACTATCTTGGAATACCAGGGCTTCACTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCCATTTTGATGGTAACTTATGACAAACAATCTTATTTTCTGTGGTCTGGTATTTTACTTGTCATATCTTTTGGGCAGTTTAATTAATGGCATGAATGGTTTAGGAAGTGTGACGCTATAATCTGTCCTGTTTTGGGTTTAAACCAGTGTTAAGTTGAGTTGGTTAATCTCAATCAATTCTCATCCATTCCCACAAGAACACAAGTGTTGTGGCTCCCCATGCAGTCTCTACAACGAGCACTGGCCCTTGATAAGCTTGTTGAGGAACTTGGAATTTAAATTATTCTTTTGGAAATCGATCCTTTTGGAGATTATTCAAGTTAGAAAAAAGAGACTTTTGCTGAAGAAAAAAGTTCAAAGATATAAACCTCCAGATGGGGCGAAAGGGAAAACATAATGCCTAAAGAAAAAGGATTACAAGAAACCAAAACAAGCCAAACAAAAAGAAGGAACTAAAGAATCGCCAACAATCAACAAAAAATGCAAAACTAGAAGATCGAAGTGCCAACCTTTTAGATGGCTTTCAAATGAAAGCTAAAACATTAACGGGAATCTCCTCAAGTCGCTGAAAGCTTCAAATAGAAACCGCACCAACCCACTTGAAACATCACACCAGAAAAGGAAGAAAAGCAGCATCTGCCATGGAGAAATGCATGAACACCAAGGGGACGAACAACCAAAACCTCTATTAAGTGCAAATCTTAACTGCAAAAAACACTAGAAGAAGCATCAGCTTCACCCAAGAACTAAAAACTGAAGAGCAAAACAAAAAATATCCACCAAAGACAAAATCAATGCAAAAAGATAATGGAACCAAAGTCCAAAATCCCATCCTCATAGATTTAATGCCATATTTCTCTAGAAAGGAATGAAGTTTTTCCTTTTCATGGAATGTTTTGATGAGAGGGGGGAGATAAAGAACTATCTGACTGCTACTTTAAAGGTAAATTAATATTGTCTTCTTGAAAAATAGAACAAAGAGCTTCGTTAAAATCCTTGTCATCAGGGGCCTCGTCAGTCGTCAGTCGTAAGAAACCTTTTCATGCGATTAACAATTGGAAAATTGAACTCCAAGTCATAACTACTAAGACTTATTCGATTCCTCACTTTTCTTCATAAAAAATTAACTTTTTGGTGATCCCATTGAGTTATATAATACCCATAGAAAGAGTGTTATTAACTAAGGATGTTGAAGAATTAGATAGTCTATTGTTAAGAGAGCGTATTAAACTATTATATGTCTGATTGTTCTTACAACTGTGTGATGTAAGTTAAAATGTAAATAGGTTGGACCCGAATATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGATCCCTTGAATCTGTCCAAGGATGCTGAAGCCTTTGAGGAACTAAAAGTAAAAGAGATTAAAAATGGGCGTTTAGCCATGGTTGCCTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTAAGGGACCA ATGGCGGATGTGAAGGGATTGTTGGAGGTGTCATCCACCAAATACTCGTGGTATGGAGAAGAGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGGTTTGAGTGAGGATCCTGTGGCTTTCCAGAAATTCTTCAACTTTGAAATATTGCATGCTCGTTGGGCTATGTTAGCATCCCTAGGTGCTTTAGTTCCAGAGATCTTGGATATTTTTGGAGCTTTTCATTTCACTGAACCCATCTGGTGGCGAGTGGGCTATTCAAAACTTAAGGGAGATACACTCGACTATCTTGGAATACCAGGGCTTCACTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCCATTTTGATGGTTGGACCCGAATATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGATCCCTTGAATCTGTCCAAGGATGCTGAAGCCTTTGAGGAACTAAAAGTAAAAGAGATTAAAAATGGGCGTTTAGCCATGGTTGCCTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTAAGGGACCA ATGGCGGATGTGAAGGGATTGTTGGAGGTGTCATCCACCAAATACTCGTGGTATGGAGAAGAGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGGTTTGAGTGAGGATCCTGTGGCTTTCCAGAAATTCTTCAACTTTGAAATATTGCATGCTCGTTGGGCTATGTTAGCATCCCTAGGTGCTTTAGTTCCAGAGATCTTGGATATTTTTGGAGCTTTTCATTTCACTGAACCCATCTGGTGGCGAGTGGGCTATTCAAAACTTAAGGGAGATACACTCGACTATCTTGGAATACCAGGGCTTCACTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCCATTTTGATGGTTGGACCCGAATATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGATCCCTTGAATCTGTCCAAGGATGCTGAAGCCTTTGAGGAACTAAAAGTAAAAGAGATTAAAAATGGGCGTTTAGCCATGGTTGCCTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTAAGGGACCA MADVKGLLEVSSTKYSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGP
BLAST of Cucsa.272510 vs. Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 1.6e-45 Identity = 104/206 (50.49%), Postives = 127/206 (61.65%), Query Frame = 1
BLAST of Cucsa.272510 vs. Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 2.7e-45 Identity = 96/205 (46.83%), Postives = 121/205 (59.02%), Query Frame = 1
BLAST of Cucsa.272510 vs. Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 6.1e-45 Identity = 101/200 (50.50%), Postives = 124/200 (62.00%), Query Frame = 1
BLAST of Cucsa.272510 vs. Swiss-Prot
Match: CB3_ARATH (Chlorophyll a-b binding protein 3, chloroplastic OS=Arabidopsis thaliana GN=LHCB3 PE=1 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 1.4e-44 Identity = 97/218 (44.50%), Postives = 129/218 (59.17%), Query Frame = 1
BLAST of Cucsa.272510 vs. Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 1.4e-44 Identity = 102/205 (49.76%), Postives = 125/205 (60.98%), Query Frame = 1
BLAST of Cucsa.272510 vs. TrEMBL
Match: A0A0A0L0U5_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_4G664570 PE=3 SV=1) HSP 1 Score: 421.4 bits (1082), Expect = 6.7e-115 Identity = 201/205 (98.05%), Postives = 202/205 (98.54%), Query Frame = 1
BLAST of Cucsa.272510 vs. TrEMBL
Match: M5WMP2_PRUPE (Chlorophyll a-b binding protein, chloroplastic OS=Prunus persica GN=PRUPE_ppa008546mg PE=3 SV=1) HSP 1 Score: 400.2 bits (1027), Expect = 1.6e-108 Identity = 184/212 (86.79%), Postives = 198/212 (93.40%), Query Frame = 1
BLAST of Cucsa.272510 vs. TrEMBL
Match: D7UDH1_VITVI (Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_18s0122g00430 PE=3 SV=1) HSP 1 Score: 395.2 bits (1014), Expect = 5.1e-107 Identity = 183/212 (86.32%), Postives = 194/212 (91.51%), Query Frame = 1
BLAST of Cucsa.272510 vs. TrEMBL
Match: A0A067KWW2_JATCU (Chlorophyll a-b binding protein, chloroplastic OS=Jatropha curcas GN=JCGZ_08016 PE=3 SV=1) HSP 1 Score: 394.0 bits (1011), Expect = 1.1e-106 Identity = 181/200 (90.50%), Postives = 193/200 (96.50%), Query Frame = 1
BLAST of Cucsa.272510 vs. TrEMBL
Match: W8TP79_9ROSA (Chlorophyll a-b binding protein, chloroplastic OS=Pyrus x bretschneideri PE=2 SV=1) HSP 1 Score: 393.3 bits (1009), Expect = 1.9e-106 Identity = 180/208 (86.54%), Postives = 195/208 (93.75%), Query Frame = 1
BLAST of Cucsa.272510 vs. TAIR10
Match: AT1G76570.1 (AT1G76570.1 Chlorophyll A-B binding family protein) HSP 1 Score: 372.5 bits (955), Expect = 1.8e-103 Identity = 167/200 (83.50%), Postives = 185/200 (92.50%), Query Frame = 1
BLAST of Cucsa.272510 vs. TAIR10
Match: AT3G27690.1 (AT3G27690.1 photosystem II light harvesting complex gene 2.3) HSP 1 Score: 185.3 bits (469), Expect = 4.1e-47 Identity = 107/208 (51.44%), Postives = 130/208 (62.50%), Query Frame = 1
BLAST of Cucsa.272510 vs. TAIR10
Match: AT2G05100.1 (AT2G05100.1 photosystem II light harvesting complex gene 2.1) HSP 1 Score: 181.4 bits (459), Expect = 5.9e-46 Identity = 106/208 (50.96%), Postives = 129/208 (62.02%), Query Frame = 1
BLAST of Cucsa.272510 vs. TAIR10
Match: AT2G05070.1 (AT2G05070.1 photosystem II light harvesting complex gene 2.2) HSP 1 Score: 181.4 bits (459), Expect = 5.9e-46 Identity = 106/208 (50.96%), Postives = 129/208 (62.02%), Query Frame = 1
BLAST of Cucsa.272510 vs. TAIR10
Match: AT5G54270.1 (AT5G54270.1 light-harvesting chlorophyll B-binding protein 3) HSP 1 Score: 181.0 bits (458), Expect = 7.7e-46 Identity = 97/218 (44.50%), Postives = 129/218 (59.17%), Query Frame = 1
BLAST of Cucsa.272510 vs. NCBI nr
Match: gi|449455655|ref|XP_004145567.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X1 [Cucumis sativus]) HSP 1 Score: 423.7 bits (1088), Expect = 1.9e-115 Identity = 203/212 (95.75%), Postives = 204/212 (96.23%), Query Frame = 1
BLAST of Cucsa.272510 vs. NCBI nr
Match: gi|659105211|ref|XP_008453032.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo]) HSP 1 Score: 422.5 bits (1085), Expect = 4.3e-115 Identity = 202/212 (95.28%), Postives = 204/212 (96.23%), Query Frame = 1
BLAST of Cucsa.272510 vs. NCBI nr
Match: gi|700200392|gb|KGN55550.1| (hypothetical protein Csa_4G664570 [Cucumis sativus]) HSP 1 Score: 421.4 bits (1082), Expect = 9.6e-115 Identity = 201/205 (98.05%), Postives = 202/205 (98.54%), Query Frame = 1
BLAST of Cucsa.272510 vs. NCBI nr
Match: gi|595847551|ref|XP_007209349.1| (hypothetical protein PRUPE_ppa008546mg [Prunus persica]) HSP 1 Score: 400.2 bits (1027), Expect = 2.3e-108 Identity = 184/212 (86.79%), Postives = 198/212 (93.40%), Query Frame = 1
BLAST of Cucsa.272510 vs. NCBI nr
Match: gi|1009126091|ref|XP_015879964.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Ziziphus jujuba]) HSP 1 Score: 397.5 bits (1020), Expect = 1.5e-107 Identity = 184/212 (86.79%), Postives = 199/212 (93.87%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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