Cucsa.272510.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.272510.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	scaffold02500 : 1014128 .. 1017837 (+)
Sequence length	648

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATGTGAAGGGATTGTTGGAGGTGTCATCCACCAAATAGTTATTTGCAATTGAGTCGGGTTTAATTGTAATTGAACAAGATGTTTTTGAATATCGTTAGAATTATAGGAGTAAATATCAGGAGACTCTTATCTCTTCAAGTTGGAACTACTTCGGTGAGAACATGCAGTAGATGAGCACTTCTCTGACAACACATTCAGGTGAAGGAAGTTTGTAAACTAACTTTCTACTATTATGATGAAAGTCCCATACGCAAATATGGATATAGCCAAACGTCTAGCCAACTCATAACAGAATGAGGAAGCTAACTATGACCAAGTAAAACAAACTAACAACATGTAGTTAATAAAAGTAAGACTTTTGTTATTTCTTTTTAATATTTGTGAATTCTAAACCCAACATCACAAATCTTGACTCTTCTCATAGAACAACCGTCTGACTCTACTATACTTGGGTTCTATTGACTACAGTGAAATATTTGCTAATTGCTACTATAATTCTTCTTCTAGTTAACTTATCATGAATGTTCCAATTCAAAATTTGGATACCTGTTTAATTTTTtAAGTTTCATTGTAGAATTGGGTCAGTAGTATTCTTAAATATTTATTTCATTTGGTTTCATTTGATTGTCTAGCATCTTTCATGTTCTGCAAACTTTCTTCATTCTTGAAATTGAGTACATGGCTATTATCTTTTGATCGTAGTAATTTACATTGTATTGGATGTGGTATTATAAATTATTATTTTTCCAACTATGAATGTTTAACGGCGTAAACAAATAGTACATTTTAATCCAATTGGGTTGTGTTGTAAATACTATTCTATTGGTGAATAATTGCAGCTCGTGGTATGGAGAAGAGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGGTTTGAGTGAGGATCCTGTGGCTTTCCAGAAATTCTTCAAGTATATTGAGCTTCTTTAGCCTGAATTTTTTtCTCAGCAGTTCCTTTTTtCCCCAATATCTGGAATCATATGTAGATGCAATAGTGCATATCATAAGAGAGTGATTATTTTGACTTGTGAATTGGCTGGTCTACAAAGTGATGACATAGTGATGATTAGGCAGATAAGCTGTGAGAGTAACAAAATGATTCTGCACAATATAATATAGACATCACCTTAAAATGATCCCTGAATAAATATCCACATATTTGTTAGCTATGATACAAAACTCGCATTCTGCACAGCTTGCTATCCAATTTTGACGATATTTGAGCTATTCCATATGCAATATAACTTTGCAGTCCTAATTATCTCCAATAATAGCAACTCTTGTTGAATGTATCTATTTCTTTTAATAGTTTTTTtCTTTTTGAATTTTTCATCAATAATTGATCTGTTTACTCAATCTTACTTCAGCTTTGAAATATTGCATGCTCGTTGGGCTATGTTAGCATCCCTAGGTGCTTTAGTTCCAGAGATCTTGGATATTTTTGGAGCTTTTCATTTCACTGAACCCATCTGGTGGCGAGTGGGCTATTCAAAACTTAAGGTTTGTTTTCTAGCACTTGGTCAACCATTTTTTTGGAGATTTATTTCATAAATTCTTGATCGTATGTTTGCTTGTTTTGTTTCCATGTTTTtACCCTTTTGTCTGGTTATATTTCCACTGCTATCAAATTGTTGTTTTGCTCTTGTTGAATCATGTTTTATTTCAAAGTCTAGTTTTGTCTGCCTTTATTAATGAAATGAAATAATAACGATTATGGCTTCATATCTTTCAGAGCCGTGGTAAGCTTGAGTTGCTGCTGCCTTACTTCTATTTCATTTAATCTTCCATTACCGTGTGATCTCGGGAGAAATAGTGGTTCATCAATTTTAATTTCATTTTAACTATCTTGTGTACTATTCCCTGTAAACAGAGGGCTCTCCCATGTATTTGAAGAGAACTGAATCATATTCCCTTTTTTTAGAAACTCCATGGGTGTGTGTAGTTCCTCAATCCACATTCATTACCTATGACTTTCCAGCACTTGTAACTGACTCTTTTTCATGTTACTGTTTGTGTTCTCTTTCCACCAGGGAGATACACTCGACTATCTTGGAATACCAGGGCTTCACTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCCATTTTGATGGTAACTTATGACAAACAATCTTATTTTCTGTGGTCTGGTATTTTACTTGTCATATCTTTTGGGCAGTTTAATTAATGGCATGAATGGTTTAGGAAGTGTGACGCTATAATCTGTCCTGTTTTGGGTTTAAACCAGTGTTAAGTTGAGTTGGTTAATCTCAATCAATTCTCATCCATTCCCACAAGAACACAAGTGTTGTGGCTCCCCATGCAGTCTCTACAACGAGCACTGGCCCTTGATAAGCTTGTTGAGGAACTTGGAATTTAAATTATTCTTTTGGAAATCGATCCTTTTGGAGATTATTCAAGTTAGAAAAAAGAGACTTTTGCTGAAGAAAAAAGTTCAAAGATATAAACCTCCAGATGGGGCGAAAGGGAAAACATAATGCCTAAAGAAAAAGGATTACAAGAAACCAAAACAAGCCAAACAAAAAGAAGGAACTAAAGAATCGCCAACAATCAACAAAAAATGCAAAACTAGAAGATCGAAGTGCCAACCTTTTAGATGGCTTTCAAATGAAAGCTAAAACATTAACGGGAATCTCCTCAAGTCGCTGAAAGCTTCAAATAGAAACCGCACCAACCCACTTGAAACATCACACCAGAAAAGGAAGAAAAGCAGCATCTGCCATGGAGAAATGCATGAACACCAAGGGGACGAACAACCAAAACCTCTATTAAGTGCAAATCTTAACTGCAAAAAACACTAGAAGAAGCATCAGCTTCACCCAAGAACTAAAAACTGAAGAGCAAAACAAAAAATATCCACCAAAGACAAAATCAATGCAAAAAGATAATGGAACCAAAGTCCAAAATCCCATCCTCATAGATTTAATGCCATATTTCTCTAGAAAGGAATGAAGTTTTTCCTTTTCATGGAATGTTTTGATGAGAGGGGGGAGATAAAGAACTATCTGACTGCTACTTTAAAGGTAAATTAATATTGTCTTCTTGAAAAATAGAACAAAGAGCTTCGTTAAAATCCTTGTCATCAGGGGCCTCGTCAGTCGTCAGTCGTAAGAAACCTTTTCATGCGATTAACAATTGGAAAATTGAACTCCAAGTCATAACTACTAAGACTTATTCGATTCCTCACTTTTCTTCATAAAAAATTAACTTTTTGGTGATCCCATTGAGTTATATAATACCCATAGAAAGAGTGTTATTAACTAAGGATGTTGAAGAATTAGATAGTCTATTGTTAAGAGAGCGTATTAAACTATTATATGTCTGATTGTTCTTACAACTGTGTGATGTAAGTTAAAATGTAAATAGGTTGGACCCGAATATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGATCCCTTGAATCTGTCCAAGGATGCTGAAGCCTTTGAGGAACTAAAAGTAAAAGAGATTAAAAATGGGCGTTTAGCCATGGTTGCCTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTAAGGGACCA

mRNA sequence

ATGGCGGATGTGAAGGGATTGTTGGAGGTGTCATCCACCAAATACTCGTGGTATGGAGAAGAGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGGTTTGAGTGAGGATCCTGTGGCTTTCCAGAAATTCTTCAACTTTGAAATATTGCATGCTCGTTGGGCTATGTTAGCATCCCTAGGTGCTTTAGTTCCAGAGATCTTGGATATTTTTGGAGCTTTTCATTTCACTGAACCCATCTGGTGGCGAGTGGGCTATTCAAAACTTAAGGGAGATACACTCGACTATCTTGGAATACCAGGGCTTCACTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCCATTTTGATGGTTGGACCCGAATATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGATCCCTTGAATCTGTCCAAGGATGCTGAAGCCTTTGAGGAACTAAAAGTAAAAGAGATTAAAAATGGGCGTTTAGCCATGGTTGCCTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTAAGGGACCA

Coding sequence (CDS)

ATGGCGGATGTGAAGGGATTGTTGGAGGTGTCATCCACCAAATACTCGTGGTATGGAGAAGAGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGGTTTGAGTGAGGATCCTGTGGCTTTCCAGAAATTCTTCAACTTTGAAATATTGCATGCTCGTTGGGCTATGTTAGCATCCCTAGGTGCTTTAGTTCCAGAGATCTTGGATATTTTTGGAGCTTTTCATTTCACTGAACCCATCTGGTGGCGAGTGGGCTATTCAAAACTTAAGGGAGATACACTCGACTATCTTGGAATACCAGGGCTTCACTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCCATTTTGATGGTTGGACCCGAATATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGATCCCTTGAATCTGTCCAAGGATGCTGAAGCCTTTGAGGAACTAAAAGTAAAAGAGATTAAAAATGGGCGTTTAGCCATGGTTGCCTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTAAGGGACCA

Protein sequence

MADVKGLLEVSSTKYSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGP

Homology

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BLAST of Cucsa.272510.1 vs. Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.6e-45
Identity = 104/206 (50.49%), Postives = 127/206 (61.65%), Query Frame = 1


Query: 11  SSTKYSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHA 70
           S+ +  WYGE+RP++LGP     P YLTGE PGDYG+D AGLS DP  F +    E++H 
Sbjct: 43  SAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHC 102

Query: 71  RWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIV 130
           RWAML +LG + PEIL   G   F E +W++ G        LDYLG P  +L  +Q ++ 
Sbjct: 103 RWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILA 162

Query: 131 IAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVK 190
           I  CQ +LM   E  R  G     PLG  L  D  YPGG  FDPL L+ D EAF ELKVK
Sbjct: 163 IWACQVVLMGFVEGYRVGG----GPLGEGL--DKIYPGGA-FDPLGLADDPEAFAELKVK 222

Query: 191 EIKNGRLAMVAWLGFYSQAALTGKGP 217
           EIKNGRLAM +  GF+ QA +TGKGP
Sbjct: 223 EIKNGRLAMFSMFGFFVQAIVTGKGP 238

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BLAST of Cucsa.272510.1 vs. Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.7e-45
Identity = 96/205 (46.83%), Postives = 121/205 (59.02%), Query Frame = 1


Query: 12  STKYSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHAR 71
           S    WYG +R +WLGP   + P YLTGE PGDYG+D AGLS DP  F+K+   E++HAR
Sbjct: 34  SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHAR 93

Query: 72  WAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVI 131
           WA+L +LG L PE+L  +    F EP+W++ G        LDYLG P   L  +Q ++  
Sbjct: 94  WALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPA--LIHAQNIVAT 153

Query: 132 AICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVKE 191
              Q +LM   E  R  G  A E L    PG+        FDPL L+ D + F ELKVKE
Sbjct: 154 LAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGE-------SFDPLGLADDPDTFAELKVKE 213

Query: 192 IKNGRLAMVAWLGFYSQAALTGKGP 217
           IKNGRLAM +  GF+ QA +TGKGP
Sbjct: 214 IKNGRLAMFSCFGFFVQAIVTGKGP 229

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BLAST of Cucsa.272510.1 vs. Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 6.1e-45
Identity = 101/200 (50.50%), Postives = 124/200 (62.00%), Query Frame = 1


Query: 17  WYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLA 76
           WYG +R ++LGP   + P YLTGE PGDYG+D AGLS DP  F K    E++H RWAML 
Sbjct: 50  WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 109

Query: 77  SLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQA 136
           +LG + PE+L   G   F E +W++ G        LDYLG P   L  +Q ++ I  CQ 
Sbjct: 110 ALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQV 169

Query: 137 ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVKEIKNGR 196
           +LM   E  R  G    EPLG  +  D  YPGG  FDPL L++D EAF ELKVKEIKNGR
Sbjct: 170 VLMGAVEGYRVAG----EPLGEVV--DPLYPGG-SFDPLGLAEDPEAFAELKVKEIKNGR 229

Query: 197 LAMVAWLGFYSQAALTGKGP 217
           LAM +  GF+ QA +TGKGP
Sbjct: 230 LAMFSMFGFFVQALVTGKGP 239

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BLAST of Cucsa.272510.1 vs. Swiss-Prot
Match: CB3_ARATH (Chlorophyll a-b binding protein 3, chloroplastic OS=Arabidopsis thaliana GN=LHCB3 PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.4e-44
Identity = 97/218 (44.50%), Postives = 129/218 (59.17%), Query Frame = 1


Query: 4   VKGLLEVSSTKYS-----WYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVA 63
           ++ ++ + S KY+     WYG +R ++LGP     P YLTGE PGDYG+D AGLS DP A
Sbjct: 29  LRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEA 88

Query: 64  FQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIP 123
           F K    E++H RWAML + G + PE+L  +    F EP+W++ G        LDYLG P
Sbjct: 89  FAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP 148

Query: 124 GLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLS 183
             +L  +Q ++ +   Q ILM   E  R  G++ +        G+  YPGG  FDPL L+
Sbjct: 149 --NLVHAQSILAVLGFQVILMGLVEGFRINGLDGVG------EGNDLYPGGQYFDPLGLA 208

Query: 184 KDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGP 217
            D   F ELKVKEIKNGRLAM +  GF+ QA +TGKGP
Sbjct: 209 DDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238

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BLAST of Cucsa.272510.1 vs. Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.4e-44
Identity = 102/205 (49.76%), Postives = 125/205 (60.98%), Query Frame = 1


Query: 12  STKYSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHAR 71
           S+   WYG  R ++LGP   + P YLTGE PGDYG+D AGLS DP  F K    E++H R
Sbjct: 46  SSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCR 105

Query: 72  WAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVI 131
           WAML +LG + PE+L   G   F E +W++ G        LDYLG P   L  +Q ++ I
Sbjct: 106 WAMLGALGCVFPELLARNGV-KFGEAVWFKGGSQIFSQGGLDYLGNPS--LVHAQSILAI 165

Query: 132 AICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVKE 191
             CQ +LM   E  R  G    EPLG  +  D  YPGG  FDPL L++D EAF ELKVKE
Sbjct: 166 WACQVVLMGAVEGYRVAG----EPLGEVV--DPLYPGG-SFDPLGLAEDPEAFAELKVKE 225

Query: 192 IKNGRLAMVAWLGFYSQAALTGKGP 217
           IKNGRLAM +  GF+ QA +TGKGP
Sbjct: 226 IKNGRLAMFSMFGFFVQAIVTGKGP 240

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BLAST of Cucsa.272510.1 vs. TrEMBL
Match: A0A0A0L0U5_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_4G664570 PE=3 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 6.7e-115
Identity = 201/205 (98.05%), Postives = 202/205 (98.54%), Query Frame = 1


Query: 12  STKYSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHAR 71
           +T  SWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHAR
Sbjct: 44  NTFSSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHAR 103

Query: 72  WAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVI 131
           WAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVI
Sbjct: 104 WAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVI 163

Query: 132 AICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVKE 191
           AICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDA AFEELKVKE
Sbjct: 164 AICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKE 223

Query: 192 IKNGRLAMVAWLGFYSQAALTGKGP 217
           IKNGRLAMVAWLGFYSQAALTGKGP
Sbjct: 224 IKNGRLAMVAWLGFYSQAALTGKGP 248

[Close]

BLAST of Cucsa.272510.1 vs. TrEMBL
Match: M5WMP2_PRUPE (Chlorophyll a-b binding protein, chloroplastic OS=Prunus persica GN=PRUPE_ppa008546mg PE=3 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 1.6e-108
Identity = 184/212 (86.79%), Postives = 198/212 (93.40%), Query Frame = 1


Query: 5   KGLLEVSSTKYSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFN 64
           +GL E +  +  WYGEERPRWLGP+PYDYP YLTGELPGDYGFD+ GLS DPVAFQK+FN
Sbjct: 93  RGLAEKARKQSLWYGEERPRWLGPIPYDYPAYLTGELPGDYGFDVVGLSRDPVAFQKYFN 152

Query: 65  FEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAG 124
           FEILHARWAMLA+LGAL+PEILD+ GAFHF EP+WWRVGYSKLKGDTLDYLGIPGLH+AG
Sbjct: 153 FEILHARWAMLAALGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGLHVAG 212

Query: 125 SQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAF 184
           SQGVIVIAICQA+LMVGPEYARYCGIEALEPLGIYLPGD+NYPGG LFDPLNLS+D  AF
Sbjct: 213 SQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDVNYPGGELFDPLNLSRDPVAF 272

Query: 185 EELKVKEIKNGRLAMVAWLGFYSQAALTGKGP 217
           EELKVKEIKNGRLAMVAWLGFYSQAALTGKGP
Sbjct: 273 EELKVKEIKNGRLAMVAWLGFYSQAALTGKGP 304

[Close]

BLAST of Cucsa.272510.1 vs. TrEMBL
Match: D7UDH1_VITVI (Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_18s0122g00430 PE=3 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 5.1e-107
Identity = 183/212 (86.32%), Postives = 194/212 (91.51%), Query Frame = 1


Query: 5   KGLLEVSSTKYSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFN 64
           K L E +  +  WYGEERPRWLGP+PYDYP YLTGELPGDYGFDIAGL +DPVAFQK+FN
Sbjct: 97  KALAEKAKNESLWYGEERPRWLGPIPYDYPAYLTGELPGDYGFDIAGLGKDPVAFQKYFN 156

Query: 65  FEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAG 124
           FEILHARWAMLA+LGAL+PE+LD+ GAFHF EP+WWRVGYSKLKGDTLDYLGIPG H AG
Sbjct: 157 FEILHARWAMLAALGALLPELLDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGFHFAG 216

Query: 125 SQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAF 184
           SQGVIVIAICQA+LMVGPEYARYCGIEALEPLGIYLPGDINYPGG LFDPLNLSKD  AF
Sbjct: 217 SQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSKDPVAF 276

Query: 185 EELKVKEIKNGRLAMVAWLGFYSQAALTGKGP 217
           EELKVKEIKNGRLAMVAWLGFY QAA TGKGP
Sbjct: 277 EELKVKEIKNGRLAMVAWLGFYIQAAATGKGP 308

[Close]

BLAST of Cucsa.272510.1 vs. TrEMBL
Match: A0A067KWW2_JATCU (Chlorophyll a-b binding protein, chloroplastic OS=Jatropha curcas GN=JCGZ_08016 PE=3 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 1.1e-106
Identity = 181/200 (90.50%), Postives = 193/200 (96.50%), Query Frame = 1


Query: 17  WYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLA 76
           WYGEERP WLGP+PYDYP+YLTGELPGDYGFD+AGLS+DPVAFQ++FNFEILHARWAMLA
Sbjct: 115 WYGEERPHWLGPIPYDYPQYLTGELPGDYGFDVAGLSKDPVAFQRYFNFEILHARWAMLA 174

Query: 77  SLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQA 136
           +LGALVPE+LD+ GAFHF EP+WWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQA
Sbjct: 175 ALGALVPELLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQA 234

Query: 137 ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVKEIKNGR 196
           +LMVGPEYARYCGIEALEPLGIYLPGDINYPGG LFDPLNLS D  AFEELKVKEIKNGR
Sbjct: 235 LLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSGDPVAFEELKVKEIKNGR 294

Query: 197 LAMVAWLGFYSQAALTGKGP 217
           LAMVAWLGFY+QAALTGKGP
Sbjct: 295 LAMVAWLGFYAQAALTGKGP 314

[Close]

BLAST of Cucsa.272510.1 vs. TrEMBL
Match: W8TP79_9ROSA (Chlorophyll a-b binding protein, chloroplastic OS=Pyrus x bretschneideri PE=2 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 1.9e-106
Identity = 180/208 (86.54%), Postives = 195/208 (93.75%), Query Frame = 1


Query: 9   EVSSTKYSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEIL 68
           +++  +  WYGE RPRWLGP+PYDYP YLTGELPGDYGFD+ GLS+DPVAFQK+FNFEIL
Sbjct: 117 QIARKRSLWYGEGRPRWLGPIPYDYPAYLTGELPGDYGFDVIGLSKDPVAFQKYFNFEIL 176

Query: 69  HARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGV 128
           HARWAMLA+LGALVPEILD+ GAFHF EP+WWRVGYSKLKGDTLDYLGIPGLH+AGSQGV
Sbjct: 177 HARWAMLAALGALVPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGLHVAGSQGV 236

Query: 129 IVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELK 188
           IVIAICQ +LMVGPEYARYCGIEALEPLGIYLPGD+NYPGG LFDPLNL+KD  AFEELK
Sbjct: 237 IVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDVNYPGGELFDPLNLAKDPVAFEELK 296

Query: 189 VKEIKNGRLAMVAWLGFYSQAALTGKGP 217
           VKEIKNGRLAMVAWLGFYSQAALTGKGP
Sbjct: 297 VKEIKNGRLAMVAWLGFYSQAALTGKGP 324

[Close]

BLAST of Cucsa.272510.1 vs. TAIR10
Match: AT1G76570.1 (AT1G76570.1 Chlorophyll A-B binding family protein)

HSP 1 Score: 372.5 bits (955), Expect = 1.8e-103
Identity = 167/200 (83.50%), Postives = 185/200 (92.50%), Query Frame = 1


Query: 17  WYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLA 76
           WYG+ERPRW GP+PYDYP YLTGELPGDYGFDIAGL +D + F K+FNFEILHARWAMLA
Sbjct: 106 WYGKERPRWFGPIPYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLA 165

Query: 77  SLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQA 136
           +LGAL+PE+ D+ G FHF EP+WWRVGYSKL+G+TL+YLGIPGLH+AGSQGVIVIAICQ 
Sbjct: 166 ALGALIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAICQV 225

Query: 137 ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVKEIKNGR 196
           +LMVGPEYARYCGIEALEPLGIYLPGDINYPGG LFDPLNLS+D  AFE+LKVKEIKNGR
Sbjct: 226 LLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGR 285

Query: 197 LAMVAWLGFYSQAALTGKGP 217
           LAMVAWLGFY+QAA TGKGP
Sbjct: 286 LAMVAWLGFYAQAAFTGKGP 305

[Close]

BLAST of Cucsa.272510.1 vs. TAIR10
Match: AT3G27690.1 (AT3G27690.1 photosystem II light harvesting complex gene 2.3)

HSP 1 Score: 185.3 bits (469), Expect = 4.1e-47
Identity = 107/208 (51.44%), Postives = 130/208 (62.50%), Query Frame = 1


Query: 10  VSSTKYS-WYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEIL 69
           V ST  S WYG +RP++LGP   + P YLTGE PGDYG+D AGLS DP  F K    E++
Sbjct: 42  VKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVI 101

Query: 70  HARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGV 129
           H+RWAML +LG   PEIL   G   F E +W++ G        LDYLG P  +L  +Q +
Sbjct: 102 HSRWAMLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSI 161

Query: 130 IVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELK 189
           + I  CQ +LM   E  R  G     PLG  L  D  YPGG  FDPLNL++D EAF ELK
Sbjct: 162 LAIWACQVVLMGFIEGYRIGG----GPLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELK 221

Query: 190 VKEIKNGRLAMVAWLGFYSQAALTGKGP 217
           VKE+KNGRLAM +  GF+ QA +TGKGP
Sbjct: 222 VKELKNGRLAMFSMFGFFVQAIVTGKGP 239

[Close]

BLAST of Cucsa.272510.1 vs. TAIR10
Match: AT2G05100.1 (AT2G05100.1 photosystem II light harvesting complex gene 2.1)

HSP 1 Score: 181.4 bits (459), Expect = 5.9e-46
Identity = 106/208 (50.96%), Postives = 129/208 (62.02%), Query Frame = 1


Query: 10  VSSTKYS-WYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEIL 69
           V ST  S WYG +RP++LGP   + P YLTGE PGDYG+D AGLS DP  F K    E++
Sbjct: 41  VKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVI 100

Query: 70  HARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGV 129
           H+RWAML +LG   PEIL   G   F E +W++ G        LDYLG P  +L  +Q +
Sbjct: 101 HSRWAMLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSI 160

Query: 130 IVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELK 189
           + I   Q +LM   E  R  G     PLG  L  D  YPGG  FDPLNL++D EAF ELK
Sbjct: 161 LAIWAVQVVLMGFIEGYRIGG----GPLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELK 220

Query: 190 VKEIKNGRLAMVAWLGFYSQAALTGKGP 217
           VKE+KNGRLAM +  GF+ QA +TGKGP
Sbjct: 221 VKELKNGRLAMFSMFGFFVQAIVTGKGP 238

[Close]

BLAST of Cucsa.272510.1 vs. TAIR10
Match: AT2G05070.1 (AT2G05070.1 photosystem II light harvesting complex gene 2.2)

HSP 1 Score: 181.4 bits (459), Expect = 5.9e-46
Identity = 106/208 (50.96%), Postives = 129/208 (62.02%), Query Frame = 1


Query: 10  VSSTKYS-WYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEIL 69
           V ST  S WYG +RP++LGP   + P YLTGE PGDYG+D AGLS DP  F K    E++
Sbjct: 41  VKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVI 100

Query: 70  HARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGV 129
           H+RWAML +LG   PEIL   G   F E +W++ G        LDYLG P  +L  +Q +
Sbjct: 101 HSRWAMLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSI 160

Query: 130 IVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELK 189
           + I   Q +LM   E  R  G     PLG  L  D  YPGG  FDPLNL++D EAF ELK
Sbjct: 161 LAIWAVQVVLMGFIEGYRIGG----GPLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELK 220

Query: 190 VKEIKNGRLAMVAWLGFYSQAALTGKGP 217
           VKE+KNGRLAM +  GF+ QA +TGKGP
Sbjct: 221 VKELKNGRLAMFSMFGFFVQAIVTGKGP 238

[Close]

BLAST of Cucsa.272510.1 vs. TAIR10
Match: AT5G54270.1 (AT5G54270.1 light-harvesting chlorophyll B-binding protein 3)

HSP 1 Score: 181.0 bits (458), Expect = 7.7e-46
Identity = 97/218 (44.50%), Postives = 129/218 (59.17%), Query Frame = 1


Query: 4   VKGLLEVSSTKYS-----WYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVA 63
           ++ ++ + S KY+     WYG +R ++LGP     P YLTGE PGDYG+D AGLS DP A
Sbjct: 29  LRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEA 88

Query: 64  FQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIP 123
           F K    E++H RWAML + G + PE+L  +    F EP+W++ G        LDYLG P
Sbjct: 89  FAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP 148

Query: 124 GLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLS 183
             +L  +Q ++ +   Q ILM   E  R  G++ +        G+  YPGG  FDPL L+
Sbjct: 149 --NLVHAQSILAVLGFQVILMGLVEGFRINGLDGVG------EGNDLYPGGQYFDPLGLA 208

Query: 184 KDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGP 217
            D   F ELKVKEIKNGRLAM +  GF+ QA +TGKGP
Sbjct: 209 DDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238

[Close]

BLAST of Cucsa.272510.1 vs. NCBI nr
Match: gi|449455655|ref|XP_004145567.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 423.7 bits (1088), Expect = 1.9e-115
Identity = 203/212 (95.75%), Postives = 204/212 (96.23%), Query Frame = 1


Query: 5   KGLLEVSSTKYSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFN 64
           K L E +    SWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFN
Sbjct: 101 KALAEEARKDSSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFN 160

Query: 65  FEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAG 124
           FEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAG
Sbjct: 161 FEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAG 220

Query: 125 SQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAF 184
           SQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDA AF
Sbjct: 221 SQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAF 280

Query: 185 EELKVKEIKNGRLAMVAWLGFYSQAALTGKGP 217
           EELKVKEIKNGRLAMVAWLGFYSQAALTGKGP
Sbjct: 281 EELKVKEIKNGRLAMVAWLGFYSQAALTGKGP 312

[Close]

BLAST of Cucsa.272510.1 vs. NCBI nr
Match: gi|659105211|ref|XP_008453032.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo])

HSP 1 Score: 422.5 bits (1085), Expect = 4.3e-115
Identity = 202/212 (95.28%), Postives = 204/212 (96.23%), Query Frame = 1


Query: 5   KGLLEVSSTKYSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFN 64
           K L E +    SWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQK+FN
Sbjct: 110 KALAEEARKDSSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFN 169

Query: 65  FEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAG 124
           FEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAG
Sbjct: 170 FEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAG 229

Query: 125 SQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAF 184
           SQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDA AF
Sbjct: 230 SQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAF 289

Query: 185 EELKVKEIKNGRLAMVAWLGFYSQAALTGKGP 217
           EELKVKEIKNGRLAMVAWLGFYSQAALTGKGP
Sbjct: 290 EELKVKEIKNGRLAMVAWLGFYSQAALTGKGP 321

[Close]

BLAST of Cucsa.272510.1 vs. NCBI nr
Match: gi|700200392|gb|KGN55550.1| (hypothetical protein Csa_4G664570 [Cucumis sativus])

HSP 1 Score: 421.4 bits (1082), Expect = 9.6e-115
Identity = 201/205 (98.05%), Postives = 202/205 (98.54%), Query Frame = 1


Query: 12  STKYSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHAR 71
           +T  SWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHAR
Sbjct: 44  NTFSSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHAR 103

Query: 72  WAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVI 131
           WAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVI
Sbjct: 104 WAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVI 163

Query: 132 AICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVKE 191
           AICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDA AFEELKVKE
Sbjct: 164 AICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKE 223

Query: 192 IKNGRLAMVAWLGFYSQAALTGKGP 217
           IKNGRLAMVAWLGFYSQAALTGKGP
Sbjct: 224 IKNGRLAMVAWLGFYSQAALTGKGP 248

[Close]

BLAST of Cucsa.272510.1 vs. NCBI nr
Match: gi|595847551|ref|XP_007209349.1| (hypothetical protein PRUPE_ppa008546mg [Prunus persica])

HSP 1 Score: 400.2 bits (1027), Expect = 2.3e-108
Identity = 184/212 (86.79%), Postives = 198/212 (93.40%), Query Frame = 1


Query: 5   KGLLEVSSTKYSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFN 64
           +GL E +  +  WYGEERPRWLGP+PYDYP YLTGELPGDYGFD+ GLS DPVAFQK+FN
Sbjct: 93  RGLAEKARKQSLWYGEERPRWLGPIPYDYPAYLTGELPGDYGFDVVGLSRDPVAFQKYFN 152

Query: 65  FEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAG 124
           FEILHARWAMLA+LGAL+PEILD+ GAFHF EP+WWRVGYSKLKGDTLDYLGIPGLH+AG
Sbjct: 153 FEILHARWAMLAALGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGLHVAG 212

Query: 125 SQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAF 184
           SQGVIVIAICQA+LMVGPEYARYCGIEALEPLGIYLPGD+NYPGG LFDPLNLS+D  AF
Sbjct: 213 SQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDVNYPGGELFDPLNLSRDPVAF 272

Query: 185 EELKVKEIKNGRLAMVAWLGFYSQAALTGKGP 217
           EELKVKEIKNGRLAMVAWLGFYSQAALTGKGP
Sbjct: 273 EELKVKEIKNGRLAMVAWLGFYSQAALTGKGP 304

[Close]

BLAST of Cucsa.272510.1 vs. NCBI nr
Match: gi|1009126091|ref|XP_015879964.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Ziziphus jujuba])

HSP 1 Score: 397.5 bits (1020), Expect = 1.5e-107
Identity = 184/212 (86.79%), Postives = 199/212 (93.87%), Query Frame = 1


Query: 5   KGLLEVSSTKYSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFN 64
           + L E +  +  WYGEERPRWLGP+PYDYP YLTGELPGDYGFD+AGL++DP+AFQK+FN
Sbjct: 99  RALAENARKESLWYGEERPRWLGPIPYDYPAYLTGELPGDYGFDVAGLAKDPMAFQKYFN 158

Query: 65  FEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAG 124
           FEILHARWAMLA+LGALVPE+LD+ GAFHF EP+WWRVGYSKLKGDTLDYLGIPGLHLAG
Sbjct: 159 FEILHARWAMLAALGALVPEMLDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGLHLAG 218

Query: 125 SQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAF 184
           SQGVIVIAICQA+LMVGPEYARYCGIEALEPLGIYLPGDINYPGG +FDPLNLSKD  AF
Sbjct: 219 SQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGGVFDPLNLSKDPVAF 278

Query: 185 EELKVKEIKNGRLAMVAWLGFYSQAALTGKGP 217
           EELKVKEIKNGRLAMVAWLGFYSQAALTGKGP
Sbjct: 279 EELKVKEIKNGRLAMVAWLGFYSQAALTGKGP 310

The following BLAST results are available for this feature:

BLAST of Cucsa.272510.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CB24_SOLLC	1.6e-45	50.49	Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4...	[more]
CB2_CHLMO	2.7e-45	46.83	Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas ...	[more]
CB25_NICPL	6.1e-45	50.50	Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN...	[more]
CB3_ARATH	1.4e-44	44.50	Chlorophyll a-b binding protein 3, chloroplastic OS=Arabidopsis thaliana GN=LHCB...	[more]
CB23_NICPL	1.4e-44	49.76	Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN...	[more]

BLAST of Cucsa.272510.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0U5_CUCSA	6.7e-115	98.05	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_4G66457...	[more]
M5WMP2_PRUPE	1.6e-108	86.79	Chlorophyll a-b binding protein, chloroplastic OS=Prunus persica GN=PRUPE_ppa008...	[more]
D7UDH1_VITVI	5.1e-107	86.32	Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_18s0122g...	[more]
A0A067KWW2_JATCU	1.1e-106	90.50	Chlorophyll a-b binding protein, chloroplastic OS=Jatropha curcas GN=JCGZ_08016 ...	[more]
W8TP79_9ROSA	1.9e-106	86.54	Chlorophyll a-b binding protein, chloroplastic OS=Pyrus x bretschneideri PE=2 SV...	[more]

BLAST of Cucsa.272510.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76570.1	1.8e-103	83.50	Chlorophyll A-B binding family protein	[more]
AT3G27690.1	4.1e-47	51.44	photosystem II light harvesting complex gene 2.3	[more]
AT2G05100.1	5.9e-46	50.96	photosystem II light harvesting complex gene 2.1	[more]
AT2G05070.1	5.9e-46	50.96	photosystem II light harvesting complex gene 2.2	[more]
AT5G54270.1	7.7e-46	44.50	light-harvesting chlorophyll B-binding protein 3	[more]

BLAST of Cucsa.272510.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455655\|ref\|XP_004145567.1\|	1.9e-115	95.75	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X1 [Cucu...	[more]
gi\|659105211\|ref\|XP_008453032.1\|	4.3e-115	95.28	PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis m...	[more]
gi\|700200392\|gb\|KGN55550.1\|	9.6e-115	98.05	hypothetical protein Csa_4G664570 [Cucumis sativus]	[more]
gi\|595847551\|ref\|XP_007209349.1\|	2.3e-108	86.79	hypothetical protein PRUPE_ppa008546mg [Prunus persica]	[more]
gi\|1009126091\|ref\|XP_015879964.1\|	1.5e-107	86.79	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Ziziphus jujuba...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0009765	photosynthesis, light harvesting

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0016020	membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.272510	Cucsa.272510	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.272510.1	Cucsa.272510.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.272510.1.CDS.1	Cucsa.272510.1.CDS.1	CDS
Cucsa.272510.1.CDS.2	Cucsa.272510.1.CDS.2	CDS
Cucsa.272510.1.CDS.3	Cucsa.272510.1.CDS.3	CDS
Cucsa.272510.1.CDS.4	Cucsa.272510.1.CDS.4	CDS
Cucsa.272510.1.CDS.5	Cucsa.272510.1.CDS.5	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 17..216 score: 1.3E
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 34..209 score: 4.3
IPR023329	Chlorophyll a/b binding protein domain	GENE3D	G3DSA:1.10.3460.10		coord: 31..216 score: 1.0
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 16..216 score: 6.8
None	No IPR available	PANTHER	PTHR21649:SF24	CHLOROPHYLL A-B BINDING FAMILY PROTEIN	coord: 17..216 score: 1.3E