MELO3C015882 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015882
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Histone H2A
Location	chr1 : 30153664 .. 30154578 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATCTCGTCGAAACAAAAATTGCTATTCTCTCCATAACGACCAACGAATCCCTTCCCAATCTCAACCGGAAAGCAGAGATGAGTTCTACTGAAGTTTCCACCAAGGGCGGCAGAGGCAGGAAAGCTTCCACCAAGTCTGTCTCCAGGTCTCACAAGGCTGGTCTTCAGTTCCCTGTCGGCCGTATCGCCAGGTACCTCAAGAAAGGCCGTTATGCACAGCGTGTCGGCTCAGGCTCCCCGGTCTACCTCTCCGCCGTCCTTGAATACCTTGCTGCTGAGGTTTGTAATTTCTAACTTCACTCTTAGTTCAATTCTCTCAGTTTACAGCGTTCTGATTTAGGTCTTTTGTTTTTGTTTTAGGTTTTGGAGTTGGCGGGGAATGCTGCGAGGGACAACAAGAAGAACAGAATCATTCCAAGACATATCCAGCTTGCGGTGAGGAACGATGAGGAATTGAGCAAGCTTTTGGGATCGGTTACGATTGCAAGCGGAGGAGTGATGCCGAAGATTCATCAATCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAAGCTGAAATCGGATCGGCCTCTCAGGAATTCTAGGTTATAGTAGAAATGGCCATTGATGAATAGAAAATCAAATAGTTATTTAGGTTATGTTAGATTTTGTCATTAACTTCAATGAATGGGTTCATTCTTCTTTTGGTTTGTAAATTTTGCGAAACGAGTTTCACTTAGATTTGTATCTGTTATCATCGCCGTCGTTCAAATTTTATGTTATTCAATGTAAATGCTGATGAAGTTCAACATTAATGAAATCGTATGTATTTATTTGAATTTTATTTTCTTGGAATCTGTATGTTTTCTCATGGACCAAACAAGAACTATGAGATTTGTCCCCATTGAAATTCGAAATCTTAATTGTATTT

mRNA sequence

TCATCTCGTCGAAACAAAAATTGCTATTCTCTCCATAACGACCAACGAATCCCTTCCCAATCTCAACCGGAAAGCAGAGATGAGTTCTACTGAAGTTTCCACCAAGGGCGGCAGAGGCAGGAAAGCTTCCACCAAGTCTGTCTCCAGGTCTCACAAGGCTGGTCTTCAGTTCCCTGTCGGCCGTATCGCCAGGTACCTCAAGAAAGGCCGTTATGCACAGCGTGTCGGCTCAGGCTCCCCGGTCTACCTCTCCGCCGTCCTTGAATACCTTGCTGCTGAGGTTTTGGAGTTGGCGGGGAATGCTGCGAGGGACAACAAGAAGAACAGAATCATTCCAAGACATATCCAGCTTGCGGTGAGGAACGATGAGGAATTGAGCAAGCTTTTGGGATCGGTTACGATTGCAAGCGGAGGAGTGATGCCGAAGATTCATCAATCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAAGCTGAAATCGGATCGGCCTCTCAGGAATTCTAGGTTATAGTAGAAATGGCCATTGATGAATAGAAAATCAAATAGTTATTTAGGTTATGTTAGATTTTGTCATTAACTTCAATGAATGGGTTCATTCTTCTTTTGGTTTGTAAATTTTGCGAAACGAGTTTCACTTAGATTTGTATCTGTTATCATCGCCGTCGTTCAAATTTTATGTTATTCAATGTAAATGCTGATGAAGTTCAACATTAATGAAATCGTATGTATTTATTTGAATTTTATTTTCTTGGAATCTGTATGTTTTCTCATGGACCAAACAAGAACTATGAGATTTGTCCCCATTGAAATTCGAAATCTTAATTGTATTT

Coding sequence (CDS)

ATGAGTTCTACTGAAGTTTCCACCAAGGGCGGCAGAGGCAGGAAAGCTTCCACCAAGTCTGTCTCCAGGTCTCACAAGGCTGGTCTTCAGTTCCCTGTCGGCCGTATCGCCAGGTACCTCAAGAAAGGCCGTTATGCACAGCGTGTCGGCTCAGGCTCCCCGGTCTACCTCTCCGCCGTCCTTGAATACCTTGCTGCTGAGGTTTTGGAGTTGGCGGGGAATGCTGCGAGGGACAACAAGAAGAACAGAATCATTCCAAGACATATCCAGCTTGCGGTGAGGAACGATGAGGAATTGAGCAAGCTTTTGGGATCGGTTACGATTGCAAGCGGAGGAGTGATGCCGAAGATTCATCAATCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAAGCTGAAATCGGATCGGCCTCTCAGGAATTCTAG

Protein sequence

MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNAKDKAEIGSASQEF*

Homology

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BLAST of MELO3C015882 vs. Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.7e-57
Identity = 116/142 (81.69%), Postives = 127/142 (89.44%), Query Frame = 1


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSS+    KGGRG+  STKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AV
Sbjct: 1   MSSS--GAKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRI+PRHIQLAVRNDEELSKLLG+VTIA+GGV+P IHQ 
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQV 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKK+G  KDK EIGSASQEF
Sbjct: 121 LLPKKSG--KDKGEIGSASQEF 138

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BLAST of MELO3C015882 vs. Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.5e-57
Identity = 116/142 (81.69%), Postives = 127/142 (89.44%), Query Frame = 1


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSST  +TKGGRG+  ++KSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAV
Sbjct: 1   MSST-ATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNK NRI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+
Sbjct: 61  LEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKK G  K K EIGSASQEF
Sbjct: 121 LLPKKVG--KGKGEIGSASQEF 139

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BLAST of MELO3C015882 vs. Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.8e-56
Identity = 111/133 (83.46%), Postives = 122/133 (91.73%), Query Frame = 1


Query: 10  GGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVL 69
           GGRG+   +KSVSRS KAGLQFPVGRIARYLK G+YA+RVG+G+PVYLSAVLEYLAAEVL
Sbjct: 8   GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67

Query: 70  ELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNA 129
           ELAGNAARDNKKNRI+PRHIQLAVRNDEELS+LLG+VTIA+GGV+P IHQ+LLPKK G  
Sbjct: 68  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG-- 127

Query: 130 KDKAEIGSASQEF 143
           KDKA+IGSASQEF
Sbjct: 128 KDKADIGSASQEF 138

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BLAST of MELO3C015882 vs. Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.8e-56
Identity = 111/133 (83.46%), Postives = 122/133 (91.73%), Query Frame = 1


Query: 10  GGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVL 69
           GGRG+   +KSVSRS KAGLQFPVGRIARYLK G+YA+RVG+G+PVYLSAVLEYLAAEVL
Sbjct: 8   GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67

Query: 70  ELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNA 129
           ELAGNAARDNKKNRI+PRHIQLAVRNDEELS+LLG+VTIA+GGV+P IHQ+LLPKK G  
Sbjct: 68  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG-- 127

Query: 130 KDKAEIGSASQEF 143
           KDKA+IGSASQEF
Sbjct: 128 KDKADIGSASQEF 138

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BLAST of MELO3C015882 vs. Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.0e-56
Identity = 111/136 (81.62%), Postives = 123/136 (90.44%), Query Frame = 1


Query: 7   STKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 66
           +TKGGRG+  +TKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 67  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 126
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+LLP K 
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 127 GNAKDKAEIGSASQEF 143
           G  K+K +IGSASQEF
Sbjct: 129 G--KNKGDIGSASQEF 142

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BLAST of MELO3C015882 vs. TrEMBL
Match: A0A0A0K525_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_7G390240 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 2.5e-70
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSSTEVSTKGGRG+KASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

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BLAST of MELO3C015882 vs. TrEMBL
Match: A0A0S3RXP1_PHAAN (Histone H2A OS=Vigna angularis var. angularis GN=Vigan.04G292000 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.4e-59
Identity = 126/145 (86.90%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MSSTEVST---KGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 60
           MSSTEVS    KGGRG+  +TKSVSRS KAGLQFPVGR+ARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVSAAAKKGGRGKPKTTKSVSRSSKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYL 60

Query: 61  SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 120
           +AVLEYLAAEVLELAGNAARDNKK RIIPRHIQLAVRNDEELSKL+GSVTIASGGV+PKI
Sbjct: 61  TAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKI 120

Query: 121 HQSLLPKKAGNAKDKAEIGSASQEF 143
           HQ+LLPKKAG  K KAEIGSASQEF
Sbjct: 121 HQNLLPKKAG--KGKAEIGSASQEF 143

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BLAST of MELO3C015882 vs. TrEMBL
Match: A0A0L9U7S5_PHAAN (Histone H2A OS=Phaseolus angularis GN=LR48_Vigan03g225700 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.4e-59
Identity = 126/145 (86.90%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MSSTEVST---KGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 60
           MSSTEVS    KGGRG+  +TKSVSRS KAGLQFPVGR+ARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVSAAAKKGGRGKPKTTKSVSRSSKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYL 60

Query: 61  SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 120
           +AVLEYLAAEVLELAGNAARDNKK RIIPRHIQLAVRNDEELSKL+GSVTIASGGV+PKI
Sbjct: 61  TAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKI 120

Query: 121 HQSLLPKKAGNAKDKAEIGSASQEF 143
           HQ+LLPKKAG  K KAEIGSASQEF
Sbjct: 121 HQNLLPKKAG--KGKAEIGSASQEF 143

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BLAST of MELO3C015882 vs. TrEMBL
Match: V7CZN0_PHAVU (Histone H2A OS=Phaseolus vulgaris GN=PHAVU_001G146100g PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.5e-59
Identity = 126/145 (86.90%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MSSTEVST---KGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 60
           MSSTEV+T   KGGRG+  +TKSVSRS KAGLQFPVGRIARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVATTTKKGGRGKPKTTKSVSRSSKAGLQFPVGRIARYLKAGRYAQRVGSGSPVYL 60

Query: 61  SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 120
           SAVLEYLAAEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELSKL+GSVTIASGGV+PKI
Sbjct: 61  SAVLEYLAAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKI 120

Query: 121 HQSLLPKKAGNAKDKAEIGSASQEF 143
           HQ+LLPKK G  K K EIGSASQEF
Sbjct: 121 HQNLLPKKTG--KGKGEIGSASQEF 143

[Close]

BLAST of MELO3C015882 vs. TrEMBL
Match: A0A0A0LW51_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_1G572950 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 7.6e-59
Identity = 120/142 (84.51%), Postives = 132/142 (92.96%), Query Frame = 1


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSST  STKGGRG+  +TKSVSRSHKAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKK G  KDK +IGSASQEF
Sbjct: 121 LLPKKVG--KDKGDIGSASQEF 140

[Close]

BLAST of MELO3C015882 vs. TAIR10
Match: AT1G08880.1 (AT1G08880.1 Histone superfamily protein)

HSP 1 Score: 219.2 bits (557), Expect = 1.7e-57
Identity = 111/136 (81.62%), Postives = 123/136 (90.44%), Query Frame = 1


Query: 7   STKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 66
           +TKGGRG+  +TKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 67  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 126
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+LLP K 
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 127 GNAKDKAEIGSASQEF 143
           G  K+K +IGSASQEF
Sbjct: 129 G--KNKGDIGSASQEF 142

[Close]

BLAST of MELO3C015882 vs. TAIR10
Match: AT1G54690.1 (AT1G54690.1 gamma histone variant H2AX)

HSP 1 Score: 218.8 bits (556), Expect = 2.2e-57
Identity = 111/136 (81.62%), Postives = 123/136 (90.44%), Query Frame = 1


Query: 7   STKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 66
           +TKGGRG+  +TKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 67  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 126
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+LLP K 
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 127 GNAKDKAEIGSASQEF 143
           G  K+K +IGSASQEF
Sbjct: 129 G--KNKGDIGSASQEF 142

[Close]

BLAST of MELO3C015882 vs. TAIR10
Match: AT4G27230.1 (AT4G27230.1 histone H2A 2)

HSP 1 Score: 193.0 bits (489), Expect = 1.3e-49
Identity = 99/128 (77.34%), Postives = 110/128 (85.94%), Query Frame = 1


Query: 11  GRGRK----ASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 70
           GRG++    A+ KS SRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 130
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIA+GGVMP IH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

Query: 131 GNAKDKAE 135
           G++K   E
Sbjct: 123 GSSKPTEE 130

[Close]

BLAST of MELO3C015882 vs. TAIR10
Match: AT1G51060.1 (AT1G51060.1 histone H2A 10)

HSP 1 Score: 190.7 bits (483), Expect = 6.4e-49
Identity = 95/122 (77.87%), Postives = 106/122 (86.89%), Query Frame = 1


Query: 13  GRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELA 72
           G  ++ K+ +RS KAGLQFPVGRIAR+LKKG+YA+RVG+G+PVYL+AVLEYLAAEVLELA
Sbjct: 9   GSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELA 68

Query: 73  GNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNAKDK 132
           GNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIA+GGVMP IH  LLPKK G +K  
Sbjct: 69  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASKPS 128

Query: 133 AE 135
           AE
Sbjct: 129 AE 130

[Close]

BLAST of MELO3C015882 vs. TAIR10
Match: AT3G20670.1 (AT3G20670.1 histone H2A 13)

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-48
Identity = 96/122 (78.69%), Postives = 104/122 (85.25%), Query Frame = 1


Query: 13  GRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELA 72
           G   + KS SRS KAGLQFPVGRIAR+LK G+YA RVG+G+PVYL+AVLEYLAAEVLELA
Sbjct: 9   GSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELA 68

Query: 73  GNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNAKDK 132
           GNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIA+GGVMP IH  LLPKKAG +K  
Sbjct: 69  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGASKPS 128

Query: 133 AE 135
           A+
Sbjct: 129 AD 130

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BLAST of MELO3C015882 vs. NCBI nr
Match: gi|659101083|ref|XP_008451416.1| (PREDICTED: histone H2AX-like [Cucumis melo])

HSP 1 Score: 273.9 bits (699), Expect = 1.6e-70
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of MELO3C015882 vs. NCBI nr
Match: gi|449462306|ref|XP_004148882.1| (PREDICTED: histone H2AX-like [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 3.6e-70
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSSTEVSTKGGRG+KASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of MELO3C015882 vs. NCBI nr
Match: gi|920695650|gb|KOM38875.1| (hypothetical protein LR48_Vigan03g225700 [Vigna angularis])

HSP 1 Score: 235.7 bits (600), Expect = 4.9e-59
Identity = 126/145 (86.90%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MSSTEVST---KGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 60
           MSSTEVS    KGGRG+  +TKSVSRS KAGLQFPVGR+ARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVSAAAKKGGRGKPKTTKSVSRSSKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYL 60

Query: 61  SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 120
           +AVLEYLAAEVLELAGNAARDNKK RIIPRHIQLAVRNDEELSKL+GSVTIASGGV+PKI
Sbjct: 61  TAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKI 120

Query: 121 HQSLLPKKAGNAKDKAEIGSASQEF 143
           HQ+LLPKKAG  K KAEIGSASQEF
Sbjct: 121 HQNLLPKKAG--KGKAEIGSASQEF 143

[Close]

BLAST of MELO3C015882 vs. NCBI nr
Match: gi|593798658|ref|XP_007162367.1| (hypothetical protein PHAVU_001G146100g [Phaseolus vulgaris])

HSP 1 Score: 235.3 bits (599), Expect = 6.4e-59
Identity = 126/145 (86.90%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MSSTEVST---KGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 60
           MSSTEV+T   KGGRG+  +TKSVSRS KAGLQFPVGRIARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVATTTKKGGRGKPKTTKSVSRSSKAGLQFPVGRIARYLKAGRYAQRVGSGSPVYL 60

Query: 61  SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 120
           SAVLEYLAAEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELSKL+GSVTIASGGV+PKI
Sbjct: 61  SAVLEYLAAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKI 120

Query: 121 HQSLLPKKAGNAKDKAEIGSASQEF 143
           HQ+LLPKK G  K K EIGSASQEF
Sbjct: 121 HQNLLPKKTG--KGKGEIGSASQEF 143

[Close]

BLAST of MELO3C015882 vs. NCBI nr
Match: gi|449435726|ref|XP_004135645.1| (PREDICTED: histone H2AX [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 1.1e-58
Identity = 120/142 (84.51%), Postives = 132/142 (92.96%), Query Frame = 1


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSST  STKGGRG+  +TKSVSRSHKAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKK G  KDK +IGSASQEF
Sbjct: 121 LLPKKVG--KDKGDIGSASQEF 140

The following BLAST results are available for this feature:

BLAST of MELO3C015882 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2AX_PICAB	2.7e-57	81.69	Histone H2AX OS=Picea abies PE=2 SV=1	[more]
H2AX_CICAR	3.5e-57	81.69	Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1	[more]
H2AXB_ORYSI	1.8e-56	83.46	Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1	[more]
H2AXB_ORYSJ	1.8e-56	83.46	Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1	[more]
H2AXA_ARATH	3.0e-56	81.62	Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1	[more]

BLAST of MELO3C015882 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K525_CUCSA	2.5e-70	99.30	Histone H2A OS=Cucumis sativus GN=Csa_7G390240 PE=3 SV=1	[more]
A0A0S3RXP1_PHAAN	3.4e-59	86.90	Histone H2A OS=Vigna angularis var. angularis GN=Vigan.04G292000 PE=3 SV=1	[more]
A0A0L9U7S5_PHAAN	3.4e-59	86.90	Histone H2A OS=Phaseolus angularis GN=LR48_Vigan03g225700 PE=3 SV=1	[more]
V7CZN0_PHAVU	4.5e-59	86.90	Histone H2A OS=Phaseolus vulgaris GN=PHAVU_001G146100g PE=3 SV=1	[more]
A0A0A0LW51_CUCSA	7.6e-59	84.51	Histone H2A OS=Cucumis sativus GN=Csa_1G572950 PE=3 SV=1	[more]

BLAST of MELO3C015882 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08880.1	1.7e-57	81.62	Histone superfamily protein	[more]
AT1G54690.1	2.2e-57	81.62	gamma histone variant H2AX	[more]
AT4G27230.1	1.3e-49	77.34	histone H2A 2	[more]
AT1G51060.1	6.4e-49	77.87	histone H2A 10	[more]
AT3G20670.1	1.1e-48	78.69	histone H2A 13	[more]

BLAST of MELO3C015882 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101083\|ref\|XP_008451416.1\|	1.6e-70	100.00	PREDICTED: histone H2AX-like [Cucumis melo]	[more]
gi\|449462306\|ref\|XP_004148882.1\|	3.6e-70	99.30	PREDICTED: histone H2AX-like [Cucumis sativus]	[more]
gi\|920695650\|gb\|KOM38875.1\|	4.9e-59	86.90	hypothetical protein LR48_Vigan03g225700 [Vigna angularis]	[more]
gi\|593798658\|ref\|XP_007162367.1\|	6.4e-59	86.90	hypothetical protein PHAVU_001G146100g [Phaseolus vulgaris]	[more]
gi\|449435726\|ref\|XP_004135645.1\|	1.1e-58	84.51	PREDICTED: histone H2AX [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002119	Histone_H2A
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006342	chromatin silencing
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000790	nuclear chromatin
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU49000	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015882T1	MELO3C015882T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU49000	MU49000	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 77..91 score: 2.0E-49coord: 63..76 score: 2.0E-49coord: 48..63 score: 2.0E-49coord: 19..41 score: 2.0E-49coord: 105..123 score: 2.0
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 8..128 score: 1.2
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 3..94 score: 7.6
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 11..127 score: 4.3
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 22..125 score: 3.29
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 7..142 score: 4.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015882	Csa7G390230	Cucumber (Chinese Long) v2	cumeB535
MELO3C015882	Cla014719	Watermelon (97103) v1	mewmB199
MELO3C015882	ClCG09G006630	Watermelon (Charleston Gray)	mewcgB175
MELO3C015882	Cla97C09G169220	Watermelon (97103) v2	mewmbB223
MELO3C015882	Bhi09G000815	Wax gourd	mewgoB254
MELO3C015882	CSPI07G16620	Wild cucumber (PI 183967)	cpimeB543
MELO3C015882	Cucsa.084750	Cucumber (Gy14) v1	cgymeB094
MELO3C015882	CmaCh17G011420	Cucurbita maxima (Rimu)	cmameB327
MELO3C015882	CmaCh08G003760	Cucurbita maxima (Rimu)	cmameB825
MELO3C015882	CmoCh17G011140	Cucurbita moschata (Rifu)	cmomeB319
MELO3C015882	CmoCh08G003710	Cucurbita moschata (Rifu)	cmomeB809
MELO3C015882	Lsi02G023340	Bottle gourd (USVL1VR-Ls)	lsimeB186
MELO3C015882	Cp4.1LG12g05200	Cucurbita pepo (Zucchini)	cpemeB124
MELO3C015882	CsGy7G015100	Cucumber (Gy14) v2	cgybmeB473
MELO3C015882	Carg07217	Silver-seed gourd	carmeB0113
MELO3C015882	Carg22176	Silver-seed gourd	carmeB0849
MELO3C015882	CsaV3_7G028390	Cucumber (Chinese Long) v3	cucmeB553

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015882	Wild cucumber (PI 183967)	cpimeB526
MELO3C015882	Cucumber (Chinese Long) v2	cumeB522
MELO3C015882	Cucurbita pepo (Zucchini)	cpemeB300
MELO3C015882	Cucumber (Gy14) v2	cgybmeB458
MELO3C015882	Cucumber (Chinese Long) v3	cucmeB538