Cucsa.084750 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.084750
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Histone H2A
Location	scaffold00862 : 412614 .. 414064 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCAAGTTTCGCATTGTCTAGGGTTTTGATTATCCGCCGGAAAAGATCGTACAATGAGTTCATCGGCTTCGACAAAGGGTGGTAGAGGGAAACCCAAAGCCACAAAGTCTGTGTCGCGGTCTCAGAAGGCTGGTCTACAGTTCCCTGTTGGTCGTATTGCTCGGTTTCTCAAGGCCGGTAAGTACGCGGAGCGTGTTGGTGCGGGTGCTCCCGTCTATCTCTCCGCCGTCCTCGAATATCTGGCCGCCGAGGTTAGTGCTTGATCTTCAAATCTGATCTTTTACCCGTTTCTCATTTGTTTGTCTTATAGTGTTGTTTTCCGATCACTTGAATCGGAGTTGTCATATTTTATTTAGTGTAGTTCCTTCTTCTTAGGCTCTGGAATTGATTTGTAGAAGAGAAATTTCATCTTCTGTTGATGATCAGTACAGAAGTGGATGAAGGTTTGTAATGATTTTGAAATCAGGGATTGGGATTGCATGAAATTGGAGTTACTATCACTGCTTTCAGAATAGTTATCTTGAGCTTTGAATTGTGGGCTTCTAATTGGTTATTAGTTTAAATTCAATGCACCTTAAAATAGTTTTGCTTACTGAATTAGGTCGTAAAGCCTCAAGATAACTTGGTTGTTTCTTTATGTTACGAAATCAACAAATAAAAAAAAGCAAAAAAGTGAAAACTGTGGAGAAATCAACACAGTGTGTTGGTTATGTTCCTGAGCAGAGGGAGAGATCAGATTTTATTTGAGAGTATCAGAGTCGCAATTAGTGTTAGATTGTTTATATAGGGCACCCCTCTAAACTATAGGACTAAAAACGTAAATAGCATAAATACAAGTACACATTAGGTTTTGTCGACATTGTCTTTGGGCCCCTTTTGAAGTGCGTCGCTCTTGAACTCTGGTTTACTAACTAGTCAGTGAGAAGTAATTGATGTTAGATTACACATTCAAGGCATTCTAATGCTTTAGATGAATGGAGTTTCATTTGAATTCATCCCGATAGTTTCTTAACGATAATGATGATTTTGTTTTGCATTTGAGGTAGCAATATATAGTAAAAAACTCCATTTGTAGGTGCTTGAGCTTGCAGGCAATGCCGCCAGAGACAACAAGAAGAATCGCATTGTTCCAAGACACATACAGCTTGCGGTCCGCAATGATGAAGAGTTAAGCAAGCTTTTGGGTGATGTGACAATTGCAAATGGTGGTGTGTTGCCTAATATCCATCAAACTCTTTTGCCTAAGAAGGCCGGATCAGGAAAAGGTGACATCGGATCTGCATCACAAGAGTTCTAAAAGTGTGATCATCTCCAAATCATACACGAGGTATTAAGAGCGAAAATGGTTGTGGTTTCTTTGCCTTGTTTTGGAATTTATTTCATTATTGTGAACCACAGAAGACTGAATTTATTTATTTGGACATATAAATGAAACCATATTGTGTTTTAA

mRNA sequence

TGTCAAGTTTCGCATTGTCTAGGGTTTTGATTATCCGCCGGAAAAGATCGTACAATGAGTTCATCGGCTTCGACAAAGGGTGGTAGAGGGAAACCCAAAGCCACAAAGTCTGTGTCGCGGTCTCAGAAGGCTGGTCTACAGTTCCCTGTTGGTCGTATTGCTCGGTTTCTCAAGGCCGGTAAGTACGCGGAGCGTGTTGGTGCGGGTGCTCCCGTCTATCTCTCCGCCGTCCTCGAATATCTGGCCGCCGAGGTGCTTGAGCTTGCAGGCAATGCCGCCAGAGACAACAAGAAGAATCGCATTGTTCCAAGACACATACAGCTTGCGGTCCGCAATGATGAAGAGTTAAGCAAGCTTTTGGGTGATGTGACAATTGCAAATGGTGGTGTGTTGCCTAATATCCATCAAACTCTTTTGCCTAAGAAGGCCGGATCAGGAAAAGGTGACATCGGATCTGCATCACAAGAGTTCTAAAAGTGTGATCATCTCCAAATCATACACGAGGTATTAAGAGCGAAAATGGTTGTGGTTTCTTTGCCTTGTTTTGGAATTTATTTCATTATTGTGAACCACAGAAGACTGAATTTATTTATTTGGACATATAAATGAAACCATATTGTGTTTTAA

Coding sequence (CDS)

ATGAGTTCATCGGCTTCGACAAAGGGTGGTAGAGGGAAACCCAAAGCCACAAAGTCTGTGTCGCGGTCTCAGAAGGCTGGTCTACAGTTCCCTGTTGGTCGTATTGCTCGGTTTCTCAAGGCCGGTAAGTACGCGGAGCGTGTTGGTGCGGGTGCTCCCGTCTATCTCTCCGCCGTCCTCGAATATCTGGCCGCCGAGGTGCTTGAGCTTGCAGGCAATGCCGCCAGAGACAACAAGAAGAATCGCATTGTTCCAAGACACATACAGCTTGCGGTCCGCAATGATGAAGAGTTAAGCAAGCTTTTGGGTGATGTGACAATTGCAAATGGTGGTGTGTTGCCTAATATCCATCAAACTCTTTTGCCTAAGAAGGCCGGATCAGGAAAAGGTGACATCGGATCTGCATCACAAGAGTTCTAA

Protein sequence

MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLLPKKAGSGKGDIGSASQEF*

Homology

[Close]

BLAST of Cucsa.084750 vs. Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 4.8e-67
Identity = 130/139 (93.53%), Postives = 134/139 (96.40%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+A+TKGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSTATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTL
Sbjct: 61  EYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKVGKGKGEIGSASQEF 139

[Close]

BLAST of Cucsa.084750 vs. Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.5e-65
Identity = 127/138 (92.03%), Postives = 129/138 (93.48%), Query Frame = 1


Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Cucsa.084750 vs. Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.0e-64
Identity = 126/138 (91.30%), Postives = 129/138 (93.48%), Query Frame = 1


Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Cucsa.084750 vs. Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 8.5e-64
Identity = 125/137 (91.24%), Postives = 130/137 (94.89%), Query Frame = 1


Query: 3   SSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEY 62
           SS+  KGGRGK K+TKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEY
Sbjct: 2   SSSGAKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEY 61

Query: 63  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLLP 122
           LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLP
Sbjct: 62  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLP 121

Query: 123 KKAGSGKGDIGSASQEF 140
           KK+G  KG+IGSASQEF
Sbjct: 122 KKSGKDKGEIGSASQEF 138

[Close]

BLAST of Cucsa.084750 vs. Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 6.7e-61
Identity = 122/137 (89.05%), Postives = 125/137 (91.24%), Query Frame = 1


Query: 3   SSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEY 62
           SSA   GGRGK K +KSVSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAVLEY
Sbjct: 2   SSAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEY 61

Query: 63  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLLP 122
           LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQTLLP
Sbjct: 62  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLP 121

Query: 123 KKAGSGKGDIGSASQEF 140
           KK G  K DIGSASQEF
Sbjct: 122 KKGGKDKADIGSASQEF 138

[Close]

BLAST of Cucsa.084750 vs. TrEMBL
Match: A0A0A0K7H2_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_7G390230 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.1e-69
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Cucsa.084750 vs. TrEMBL
Match: A0A0S3S5B9_PHAAN (Histone H2A OS=Vigna angularis var. angularis GN=Vigan.05G145900 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 4.8e-66
Identity = 132/139 (94.96%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ STKGGRGKPKA+KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSTGSTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKVGKGKGEIGSASQEF 139

[Close]

BLAST of Cucsa.084750 vs. TrEMBL
Match: A0A0L9VD09_PHAAN (Histone H2A OS=Phaseolus angularis GN=LR48_Vigan09g156200 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 4.8e-66
Identity = 132/139 (94.96%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ STKGGRGKPKA+KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSTGSTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKVGKGKGEIGSASQEF 139

[Close]

BLAST of Cucsa.084750 vs. TrEMBL
Match: A5BCX3_VITVI (Histone H2A OS=Vitis vinifera GN=VIT_14s0030g00450 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 4.8e-66
Identity = 132/139 (94.96%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ STKGGRGKPKA+KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSTGSTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKTGKGKGEIGSASQEF 139

[Close]

BLAST of Cucsa.084750 vs. TrEMBL
Match: A0A151R597_CAJCA (Histone H2A OS=Cajanus cajan GN=KK1_041069 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.8e-65
Identity = 131/138 (94.93%), Postives = 134/138 (97.10%), Query Frame = 1


Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           S+  STKGGRGKPKA+KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE
Sbjct: 3   STGGSTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 62

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLL 121
           YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLL
Sbjct: 63  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 122

Query: 122 PKKAGSGKGDIGSASQEF 140
           PKKAG GKG+IGSASQEF
Sbjct: 123 PKKAGKGKGEIGSASQEF 140

[Close]

BLAST of Cucsa.084750 vs. TAIR10
Match: AT1G54690.1 (AT1G54690.1 gamma histone variant H2AX)

HSP 1 Score: 248.4 bits (633), Expect = 2.5e-66
Identity = 127/138 (92.03%), Postives = 129/138 (93.48%), Query Frame = 1


Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Cucsa.084750 vs. TAIR10
Match: AT1G08880.1 (AT1G08880.1 Histone superfamily protein)

HSP 1 Score: 247.3 bits (630), Expect = 5.6e-66
Identity = 126/138 (91.30%), Postives = 129/138 (93.48%), Query Frame = 1


Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Cucsa.084750 vs. TAIR10
Match: AT4G27230.1 (AT4G27230.1 histone H2A 2)

HSP 1 Score: 206.8 bits (525), Expect = 8.5e-54
Identity = 109/124 (87.90%), Postives = 111/124 (89.52%), Query Frame = 1


Query: 10  GRGKP----KATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 69
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLLPKKA 129
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of Cucsa.084750 vs. TAIR10
Match: AT5G54640.1 (AT5G54640.1 Histone superfamily protein)

HSP 1 Score: 205.3 bits (521), Expect = 2.5e-53
Identity = 108/129 (83.72%), Postives = 112/129 (86.82%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           M+    T G  G  KAT   SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVL
Sbjct: 1   MAGRGKTLGSGGAKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  L
Sbjct: 61  EYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLL 120

Query: 121 LPKKAGSGK 130
           LPKKAG+ K
Sbjct: 121 LPKKAGASK 126

[Close]

BLAST of Cucsa.084750 vs. TAIR10
Match: AT3G20670.1 (AT3G20670.1 histone H2A 13)

HSP 1 Score: 200.7 bits (509), Expect = 6.1e-52
Identity = 106/124 (85.48%), Postives = 109/124 (87.90%), Query Frame = 1


Query: 10  GRGKPK----ATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 69
           GRGK      A KS SRS KAGLQFPVGRIARFLK GKYA RVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLLPKKA 129
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKA 122

[Close]

BLAST of Cucsa.084750 vs. NCBI nr
Match: gi|449462308|ref|XP_004148883.1| (PREDICTED: histone H2AX [Cucumis sativus])

HSP 1 Score: 269.6 bits (688), Expect = 3.0e-69
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Cucsa.084750 vs. NCBI nr
Match: gi|659101085|ref|XP_008451417.1| (PREDICTED: histone H2AX [Cucumis melo])

HSP 1 Score: 268.1 bits (684), Expect = 8.8e-69
Identity = 138/139 (99.28%), Postives = 139/139 (100.00%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSAS+KGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Cucsa.084750 vs. NCBI nr
Match: gi|720088934|ref|XP_010244611.1| (PREDICTED: histone H2AX [Nelumbo nucifera])

HSP 1 Score: 260.8 bits (665), Expect = 1.4e-66
Identity = 134/139 (96.40%), Postives = 136/139 (97.84%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPKA+KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKIGKGKGEIGSASQEF 139

[Close]

BLAST of Cucsa.084750 vs. NCBI nr
Match: gi|743846516|ref|XP_010938857.1| (PREDICTED: histone H2AX [Elaeis guineensis])

HSP 1 Score: 259.2 bits (661), Expect = 4.1e-66
Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPK++KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKQGKGKGEIGSASQEF 139

[Close]

BLAST of Cucsa.084750 vs. NCBI nr
Match: gi|225451096|ref|XP_002265878.1| (PREDICTED: histone H2AX [Vitis vinifera])

HSP 1 Score: 258.5 bits (659), Expect = 6.9e-66
Identity = 132/139 (94.96%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ STKGGRGKPKA+KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSTGSTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKTGKGKGEIGSASQEF 139

The following BLAST results are available for this feature:

BLAST of Cucsa.084750 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2AX_CICAR	4.8e-67	93.53	Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1	[more]
H2AXB_ARATH	4.5e-65	92.03	Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1	[more]
H2AXA_ARATH	1.0e-64	91.30	Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1	[more]
H2AX_PICAB	8.5e-64	91.24	Histone H2AX OS=Picea abies PE=2 SV=1	[more]
H2AXB_ORYSJ	6.7e-61	89.05	Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1	[more]

BLAST of Cucsa.084750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7H2_CUCSA	2.1e-69	100.00	Histone H2A OS=Cucumis sativus GN=Csa_7G390230 PE=3 SV=1	[more]
A0A0S3S5B9_PHAAN	4.8e-66	94.96	Histone H2A OS=Vigna angularis var. angularis GN=Vigan.05G145900 PE=3 SV=1	[more]
A0A0L9VD09_PHAAN	4.8e-66	94.96	Histone H2A OS=Phaseolus angularis GN=LR48_Vigan09g156200 PE=3 SV=1	[more]
A5BCX3_VITVI	4.8e-66	94.96	Histone H2A OS=Vitis vinifera GN=VIT_14s0030g00450 PE=3 SV=1	[more]
A0A151R597_CAJCA	1.8e-65	94.93	Histone H2A OS=Cajanus cajan GN=KK1_041069 PE=3 SV=1	[more]

BLAST of Cucsa.084750 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54690.1	2.5e-66	92.03	gamma histone variant H2AX	[more]
AT1G08880.1	5.6e-66	91.30	Histone superfamily protein	[more]
AT4G27230.1	8.5e-54	87.90	histone H2A 2	[more]
AT5G54640.1	2.5e-53	83.72	Histone superfamily protein	[more]
AT3G20670.1	6.1e-52	85.48	histone H2A 13	[more]

BLAST of Cucsa.084750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462308\|ref\|XP_004148883.1\|	3.0e-69	100.00	PREDICTED: histone H2AX [Cucumis sativus]	[more]
gi\|659101085\|ref\|XP_008451417.1\|	8.8e-69	99.28	PREDICTED: histone H2AX [Cucumis melo]	[more]
gi\|720088934\|ref\|XP_010244611.1\|	1.4e-66	96.40	PREDICTED: histone H2AX [Nelumbo nucifera]	[more]
gi\|743846516\|ref\|XP_010938857.1\|	4.1e-66	95.68	PREDICTED: histone H2AX [Elaeis guineensis]	[more]
gi\|225451096\|ref\|XP_002265878.1\|	6.9e-66	94.96	PREDICTED: histone H2AX [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002119	Histone_H2A
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.084750.1	Cucsa.084750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 47..62 score: 4.4E-52coord: 62..75 score: 4.4E-52coord: 18..40 score: 4.4E-52coord: 76..90 score: 4.4E-52coord: 104..122 score: 4.4
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 7..127 score: 1.3
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 12..93 score: 8.7
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 11..126 score: 7.3
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 21..124 score: 2.1
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 4..139 score: 3.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.084750	Cla014719	Watermelon (97103) v1	cgywmB092
Cucsa.084750	Csa7G390230	Cucumber (Chinese Long) v2	cgycuB085
Cucsa.084750	MELO3C015882	Melon (DHL92) v3.5.1	cgymeB094
Cucsa.084750	ClCG09G006630	Watermelon (Charleston Gray)	cgywcgB090
Cucsa.084750	CSPI07G16620	Wild cucumber (PI 183967)	cgycpiB088
Cucsa.084750	CmaCh17G011420	Cucurbita maxima (Rimu)	cgycmaB0156
Cucsa.084750	CmaCh08G003760	Cucurbita maxima (Rimu)	cgycmaB0158
Cucsa.084750	CmoCh17G011140	Cucurbita moschata (Rifu)	cgycmoB0151
Cucsa.084750	CmoCh08G003710	Cucurbita moschata (Rifu)	cgycmoB0153
Cucsa.084750	Lsi02G023340	Bottle gourd (USVL1VR-Ls)	cgylsiB091
Cucsa.084750	Cp4.1LG12g05230	Cucurbita pepo (Zucchini)	cgycpeB0150
Cucsa.084750	MELO3C015882.2	Melon (DHL92) v3.6.1	cgymedB092
Cucsa.084750	CsaV3_7G028390	Cucumber (Chinese Long) v3	cgycucB087
Cucsa.084750	Cla97C09G169220	Watermelon (97103) v2	cgywmbB088
Cucsa.084750	Bhi09G000815	Wax gourd	cgywgoB103
Cucsa.084750	Carg22176	Silver-seed gourd	carcgyB0980
Cucsa.084750	Carg07217	Silver-seed gourd	carcgyB0128

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.084750	Cucurbita maxima (Rimu)	cgycmaB0157
Cucsa.084750	Cucurbita maxima (Rimu)	cgycmaB0159
Cucsa.084750	Cucurbita moschata (Rifu)	cgycmoB0152
Cucsa.084750	Cucurbita moschata (Rifu)	cgycmoB0154
Cucsa.084750	Melon (DHL92) v3.5.1	cgymeB093
Cucsa.084750	Watermelon (Charleston Gray)	cgywcgB091
Cucsa.084750	Watermelon (97103) v1	cgywmB094
Cucsa.084750	Cucurbita pepo (Zucchini)	cgycpeB0151
Cucsa.084750	Cucurbita pepo (Zucchini)	cgycpeB0152
Cucsa.084750	Cucurbita pepo (Zucchini)	cgycpeB0153
Cucsa.084750	Bottle gourd (USVL1VR-Ls)	cgylsiB090
Cucsa.084750	Watermelon (97103) v2	cgywmbB089