Carg22176 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22176
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Histone H2A
Location	Cucurbita_argyrosperma_scaffold_274 : 183307 .. 184183 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTGCAAAAATCTTCTTTCGTCCAAATTAGTCTCTCCTCAATTTCGTTACGGTAAAGTAAATATGAGTTCCACCGATGTTCCGGCGAAGGGTGGCAGAGGCAAGAAATCTGCCGTGAAGTCCGTCACTAGGTCTCACAAGGCCGGTCTCCAATTCCCCGTCGGTCGTATCGCCAGGTACCTCAAGAAGGGCCGTTATGCTCAGCGTGTCGGCTCCGGCTCACCGGTTTACCTCTCCGCCGTTCTCGAATACCTCGCTGCCGAGGTTTGTGAATTGCAATCGTTAATTTTACTTCCGAGTTCAATTTTCTCAGTTCTCAGTGTTCTGATTGTGGACTTTTGTTTTTTCGTTTAGGTTTTGGAGTTGGCTGGCAATGCTGCGAGGGACAACAAGAAAACTAGAATTGTCCCGAGGCATATTCAACTTGCAGTGAGAAACGATGAGGAATTGAGCAAGCTTTTGGGATCAGTCACGATCGCCAGCGGAGGAGTGCTGCCGAAGATTCATCAGTCTCTTTTACCGAAGAAGGCCGGTAGCACGAAGGATAAGGCCGAGATCGGATCGGCGTCTCAGGAATTTTAGGTTGCATTAGAAATATCAGTCGATTAACAGAAAACGAAACAGTTAGGTTCTGTAAGATTGTTATTAGCTTCAATGAATCTTTCTTCATCAGGTTCGTAAATCTACGAAACGATTTTTGGTTAGAAAGGTATCCGTCTTCGTCGCCGATAAATTTCTATAGTATGTGTAAATGCTGATGAAGTTCACCACTAATTTGAATACAAAGGAACCAGTTAAATTTTTATTGTCTCGCATTCTGTAAGTTCTGTTATCAGCTAAACAAGAACTGCAAAATCATTATTGACAGGATTATTTT

mRNA sequence

TCTTGCAAAAATCTTCTTTCGTCCAAATTAGTCTCTCCTCAATTTCGTTACGGTAAAGTAAATATGAGTTCCACCGATGTTCCGGCGAAGGGTGGCAGAGGCAAGAAATCTGCCGTGAAGTCCGTCACTAGGTCTCACAAGGCCGGTCTCCAATTCCCCGTCGGTCGTATCGCCAGGTACCTCAAGAAGGGCCGTTATGCTCAGCGTGTCGGCTCCGGCTCACCGGTTTACCTCTCCGCCGTTCTCGAATACCTCGCTGCCGAGGTTTTGGAGTTGGCTGGCAATGCTGCGAGGGACAACAAGAAAACTAGAATTGTCCCGAGGCATATTCAACTTGCAGTGAGAAACGATGAGGAATTGAGCAAGCTTTTGGGATCAGTCACGATCGCCAGCGGAGGAGTGCTGCCGAAGATTCATCAGTCTCTTTTACCGAAGAAGGCCGGTAGCACGAAGGATAAGGCCGAGATCGGATCGGCGTCTCAGGAATTTTAGGTTGCATTAGAAATATCAGTCGATTAACAGAAAACGAAACAGTTAGGTTCTGTAAGATTGTTATTAGCTTCAATGAATCTTTCTTCATCAGGTTCGTAAATCTACGAAACGATTTTTGGTTAGAAAGGTATCCGTCTTCGTCGCCGATAAATTTCTATAGTATGTGTAAATGCTGATGAAGTTCACCACTAATTTGAATACAAAGGAACCAGTTAAATTTTTATTGTCTCGCATTCTGTAAGTTCTGTTATCAGCTAAACAAGAACTGCAAAATCATTATTGACAGGATTATTTT

Coding sequence (CDS)

ATGAGTTCCACCGATGTTCCGGCGAAGGGTGGCAGAGGCAAGAAATCTGCCGTGAAGTCCGTCACTAGGTCTCACAAGGCCGGTCTCCAATTCCCCGTCGGTCGTATCGCCAGGTACCTCAAGAAGGGCCGTTATGCTCAGCGTGTCGGCTCCGGCTCACCGGTTTACCTCTCCGCCGTTCTCGAATACCTCGCTGCCGAGGTTTTGGAGTTGGCTGGCAATGCTGCGAGGGACAACAAGAAAACTAGAATTGTCCCGAGGCATATTCAACTTGCAGTGAGAAACGATGAGGAATTGAGCAAGCTTTTGGGATCAGTCACGATCGCCAGCGGAGGAGTGCTGCCGAAGATTCATCAGTCTCTTTTACCGAAGAAGGCCGGTAGCACGAAGGATAAGGCCGAGATCGGATCGGCGTCTCAGGAATTTTAG

Protein sequence

MSSTDVPAKGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKAGSTKDKAEIGSASQEF

Homology

[Close]

BLAST of Carg22176 vs. NCBI nr
Match: XP_022960479.1 (histone H2AX-like [Cucurbita moschata])

HSP 1 Score: 267.7 bits (683), Expect = 2.3e-68
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MSSTDVPAKGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSSTDVPAKGGRGKKSA KSVTRSHKAGLQFPVGRIARYLKKGR+AQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120
           LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120

Query: 121 LLPKKAGSTKDKAEIGSASQEF 143
           LLPKKAGSTKDKAEIGSASQEF
Sbjct: 121 LLPKKAGSTKDKAEIGSASQEF 142

[Close]

BLAST of Carg22176 vs. NCBI nr
Match: XP_023004683.1 (histone H2AX-like [Cucurbita maxima])

HSP 1 Score: 266.9 bits (681), Expect = 3.9e-68
Identity = 140/142 (98.59%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MSSTDVPAKGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSSTDVPAK GRGKKSA KSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPAKAGRGKKSATKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120
           LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120

Query: 121 LLPKKAGSTKDKAEIGSASQEF 143
           LLPKKAGSTKDKAEIGSASQEF
Sbjct: 121 LLPKKAGSTKDKAEIGSASQEF 142

[Close]

BLAST of Carg22176 vs. NCBI nr
Match: XP_023548483.1 (histone H2AX-like [Cucurbita pepo subsp. pepo] >XP_023548484.1 histone H2AX-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.3 bits (656), Expect = 3.1e-65
Identity = 132/142 (92.96%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MSSTDVPAKGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSSTDVP KGGRGKKSA K+V+RSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPTKGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120
           LEYL AEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIASGGV+PKIHQS
Sbjct: 61  LEYLVAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGSTKDKAEIGSASQEF 143
           LLPKKAG+ KDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of Carg22176 vs. NCBI nr
Match: XP_022953582.1 (histone H2AX-like [Cucurbita moschata])

HSP 1 Score: 255.8 bits (652), Expect = 8.9e-65
Identity = 132/142 (92.96%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MSSTDVPAKGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSS DVP KGGRGKKS  KSV+RSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 11  MSSNDVPTKGGRGKKSDAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 70

Query: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120
           LEYLAAEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIASGGV+PKIHQS
Sbjct: 71  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 130

Query: 121 LLPKKAGSTKDKAEIGSASQEF 143
           LLPKKAG+ KDKAEIGSASQEF
Sbjct: 131 LLPKKAGNAKDKAEIGSASQEF 152

[Close]

BLAST of Carg22176 vs. NCBI nr
Match: XP_004148882.1 (PREDICTED: histone H2AX-like [Cucumis sativus] >KGN44845.1 Histone H2A [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 5.8e-64
Identity = 130/142 (91.55%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MSSTDVPAKGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSST+V  KGGRGKK++ KSV+RSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120
           LEYLAAEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIASGGV+PKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGSTKDKAEIGSASQEF 143
           LLPKKAG+ KDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of Carg22176 vs. TAIR10
Match: AT1G08880.1 (Histone superfamily protein)

HSP 1 Score: 216.9 bits (551), Expect = 8.3e-57
Identity = 113/134 (84.33%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 9   KGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEV 68
           KGGRGK  A KSV+RS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAAEV
Sbjct: 11  KGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEV 70

Query: 69  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKAGS 128
           LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIA+GGVLP IHQ+LLP K G 
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG- 130

Query: 129 TKDKAEIGSASQEF 143
            K+K +IGSASQEF
Sbjct: 131 -KNKGDIGSASQEF 142

[Close]

BLAST of Carg22176 vs. TAIR10
Match: AT1G54690.1 (gamma histone variant H2AX)

HSP 1 Score: 216.5 bits (550), Expect = 1.1e-56
Identity = 113/134 (84.33%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 9   KGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEV 68
           KGGRGK  A KSV+RS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAAEV
Sbjct: 11  KGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 70

Query: 69  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKAGS 128
           LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIA+GGVLP IHQ+LLP K G 
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG- 130

Query: 129 TKDKAEIGSASQEF 143
            K+K +IGSASQEF
Sbjct: 131 -KNKGDIGSASQEF 142

[Close]

BLAST of Carg22176 vs. TAIR10
Match: AT1G51060.1 (histone H2A 10)

HSP 1 Score: 195.7 bits (496), Expect = 2.0e-50
Identity = 102/128 (79.69%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 11  GRGKK----SAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 70
           GRGK     SA K+ TRS KAGLQFPVGRIAR+LKKG+YA+RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKA 130
           EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG VTIA+GGV+P IH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

Query: 131 GSTKDKAE 135
           G++K  AE
Sbjct: 123 GASKPSAE 130

[Close]

BLAST of Carg22176 vs. TAIR10
Match: AT4G27230.1 (histone H2A 2)

HSP 1 Score: 193.0 bits (489), Expect = 1.3e-49
Identity = 101/128 (78.91%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 11  GRGKK----SAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 70
           GRGK+    +A KS +RS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKA 130
           EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG VTIA+GGV+P IH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

Query: 131 GSTKDKAE 135
           GS+K   E
Sbjct: 123 GSSKPTEE 130

[Close]

BLAST of Carg22176 vs. TAIR10
Match: AT3G20670.1 (histone H2A 13)

HSP 1 Score: 190.3 bits (482), Expect = 8.3e-49
Identity = 100/128 (78.12%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 11  GRGKK----SAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 70
           GRGK      A KS +RS KAGLQFPVGRIAR+LK G+YA RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKA 130
           EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG VTIA+GGV+P IH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKA 122

Query: 131 GSTKDKAE 135
           G++K  A+
Sbjct: 123 GASKPSAD 130

[Close]

BLAST of Carg22176 vs. Swiss-Prot
Match: sp|P35063|H2AX_PICAB (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.1e-55
Identity = 113/135 (83.70%), Postives = 124/135 (91.85%), Query Frame = 0


Query: 8   AKGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAE 67
           AKGGRGK  + KSV+RS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AVLEYLAAE
Sbjct: 6   AKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAE 65

Query: 68  VLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKAG 127
           VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG+VTIA+GGVLP IHQ LLPKK+G
Sbjct: 66  VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSG 125

Query: 128 STKDKAEIGSASQEF 143
             KDK EIGSASQEF
Sbjct: 126 --KDKGEIGSASQEF 138

[Close]

BLAST of Carg22176 vs. Swiss-Prot
Match: sp|O04848|H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55
Identity = 113/134 (84.33%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 9   KGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEV 68
           KGGRGK  A KSV+RS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAAEV
Sbjct: 11  KGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEV 70

Query: 69  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKAGS 128
           LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIA+GGVLP IHQ+LLP K G 
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG- 130

Query: 129 TKDKAEIGSASQEF 143
            K+K +IGSASQEF
Sbjct: 131 -KNKGDIGSASQEF 142

[Close]

BLAST of Carg22176 vs. Swiss-Prot
Match: sp|Q9S9K7|H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.0e-55
Identity = 113/134 (84.33%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 9   KGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEV 68
           KGGRGK  A KSV+RS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAAEV
Sbjct: 11  KGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 70

Query: 69  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKAGS 128
           LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIA+GGVLP IHQ+LLP K G 
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG- 130

Query: 129 TKDKAEIGSASQEF 143
            K+K +IGSASQEF
Sbjct: 131 -KNKGDIGSASQEF 142

[Close]

BLAST of Carg22176 vs. Swiss-Prot
Match: sp|O65759|H2AX_CICAR (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.3e-55
Identity = 117/142 (82.39%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MSSTDVPAKGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSST    KGGRGK  A KSV+RS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAV
Sbjct: 1   MSST-ATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120
           LEYLAAEVLELAGNAARDNK  RIVPRHIQLAVRNDEELSKLLGSVTIA+GGVLP IHQ+
Sbjct: 61  LEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGSTKDKAEIGSASQEF 143
           LLPKK G  K K EIGSASQEF
Sbjct: 121 LLPKKVG--KGKGEIGSASQEF 139

[Close]

BLAST of Carg22176 vs. Swiss-Prot
Match: sp|A2XLI0|H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica OX=39946 GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 7.7e-52
Identity = 107/133 (80.45%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 10  GGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVL 69
           GGRGK    K+V+RS KAGLQFPVGRIARYLK G+YA+RVG+G+PVYLSAVLEYLAAEVL
Sbjct: 8   GGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67

Query: 70  ELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQSLLPKKAGST 129
           ELAGNAARDNKK RIVPRHIQLAVRNDEELS+LLG+VTIA+GGVLP I Q LLPKK G  
Sbjct: 68  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKKGGG- 127

Query: 130 KDKAEIGSASQEF 143
             K +IGSASQEF
Sbjct: 128 --KGDIGSASQEF 137

[Close]

BLAST of Carg22176 vs. TrEMBL
Match: tr|A0A0A0K525|A0A0A0K525_CUCSA (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390240 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.8e-64
Identity = 130/142 (91.55%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MSSTDVPAKGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSST+V  KGGRGKK++ KSV+RSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120
           LEYLAAEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIASGGV+PKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGSTKDKAEIGSASQEF 143
           LLPKKAG+ KDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of Carg22176 vs. TrEMBL
Match: tr|A0A1S3BRH7|A0A1S3BRH7_CUCME (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492716 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 8.5e-64
Identity = 129/142 (90.85%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MSSTDVPAKGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSST+V  KGGRG+K++ KSV+RSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120
           LEYLAAEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIASGGV+PKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGSTKDKAEIGSASQEF 143
           LLPKKAG+ KDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of Carg22176 vs. TrEMBL
Match: tr|A0A0L9U7S5|A0A0L9U7S5_PHAAN (Histone H2A OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g225700 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.2e-57
Identity = 125/145 (86.21%), Postives = 132/145 (91.03%), Query Frame = 0


Query: 1   MSSTDVPA---KGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 60
           MSST+V A   KGGRGK    KSV+RS KAGLQFPVGR+ARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVSAAAKKGGRGKPKTTKSVSRSSKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYL 60

Query: 61  SAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKI 120
           +AVLEYLAAEVLELAGNAARDNKKTRI+PRHIQLAVRNDEELSKL+GSVTIASGGVLPKI
Sbjct: 61  TAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKI 120

Query: 121 HQSLLPKKAGSTKDKAEIGSASQEF 143
           HQ+LLPKKAG  K KAEIGSASQEF
Sbjct: 121 HQNLLPKKAG--KGKAEIGSASQEF 143

[Close]

BLAST of Carg22176 vs. TrEMBL
Match: tr|A0A0S3RXP1|A0A0S3RXP1_PHAAN (Histone H2A OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G292000 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.2e-57
Identity = 125/145 (86.21%), Postives = 132/145 (91.03%), Query Frame = 0


Query: 1   MSSTDVPA---KGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 60
           MSST+V A   KGGRGK    KSV+RS KAGLQFPVGR+ARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVSAAAKKGGRGKPKTTKSVSRSSKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYL 60

Query: 61  SAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKI 120
           +AVLEYLAAEVLELAGNAARDNKKTRI+PRHIQLAVRNDEELSKL+GSVTIASGGVLPKI
Sbjct: 61  TAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKI 120

Query: 121 HQSLLPKKAGSTKDKAEIGSASQEF 143
           HQ+LLPKKAG  K KAEIGSASQEF
Sbjct: 121 HQNLLPKKAG--KGKAEIGSASQEF 143

[Close]

BLAST of Carg22176 vs. TrEMBL
Match: tr|A0A1S3TRK2|A0A1S3TRK2_VIGRR (Histone H2A OS=Vigna radiata var. radiata OX=3916 GN=LOC106758024 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 7.7e-57
Identity = 123/145 (84.83%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MSSTDVPA---KGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 60
           MSST+V A   KGGRGK    KSV+RS KAGLQFPVGR+ARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVAAPGKKGGRGKPKTTKSVSRSSKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYL 60

Query: 61  SAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKI 120
           +AVLEYLAAEVLELAGNAARDNKKTRI+PRHIQLAVRNDEELSKL+GSVTIA+GGVLPKI
Sbjct: 61  TAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLMGSVTIANGGVLPKI 120

Query: 121 HQSLLPKKAGSTKDKAEIGSASQEF 143
           HQ+LLPKKAG  K K EIGSASQEF
Sbjct: 121 HQNLLPKKAG--KGKVEIGSASQEF 143

The following BLAST results are available for this feature:

BLAST of Carg22176 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960479.1	2.3e-68	98.59	histone H2AX-like [Cucurbita moschata]	[more]
XP_023004683.1	3.9e-68	98.59	histone H2AX-like [Cucurbita maxima]	[more]
XP_023548483.1	3.1e-65	92.96	histone H2AX-like [Cucurbita pepo subsp. pepo] >XP_023548484.1 histone H2AX-like...	[more]
XP_022953582.1	8.9e-65	92.96	histone H2AX-like [Cucurbita moschata]	[more]
XP_004148882.1	5.8e-64	91.55	PREDICTED: histone H2AX-like [Cucumis sativus] >KGN44845.1 Histone H2A [Cucumis ...	[more]

BLAST of Carg22176 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08880.1	8.3e-57	84.33	Histone superfamily protein	[more]
AT1G54690.1	1.1e-56	84.33	gamma histone variant H2AX	[more]
AT1G51060.1	2.0e-50	79.69	histone H2A 10	[more]
AT4G27230.1	1.3e-49	78.91	histone H2A 2	[more]
AT3G20670.1	8.3e-49	78.13	histone H2A 13	[more]

BLAST of Carg22176 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P35063\|H2AX_PICAB	1.1e-55	83.70	Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1	[more]
sp\|O04848\|H2AXA_ARATH	1.5e-55	84.33	Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1	[more]
sp\|Q9S9K7\|H2AXB_ARATH	2.0e-55	84.33	Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1	[more]
sp\|O65759\|H2AX_CICAR	3.3e-55	82.39	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]
sp\|A2XLI0\|H2AXA_ORYSI	7.7e-52	80.45	Probable histone H2AXa OS=Oryza sativa subsp. indica OX=39946 GN=OsI_012923 PE=3...	[more]

BLAST of Carg22176 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K525\|A0A0A0K525_CUCSA	3.8e-64	91.55	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390240 PE=3 SV=1	[more]
tr\|A0A1S3BRH7\|A0A1S3BRH7_CUCME	8.5e-64	90.85	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492716 PE=3 SV=1	[more]
tr\|A0A0L9U7S5\|A0A0L9U7S5_PHAAN	1.2e-57	86.21	Histone H2A OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g225700 PE=3 SV=1	[more]
tr\|A0A0S3RXP1\|A0A0S3RXP1_PHAAN	1.2e-57	86.21	Histone H2A OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G292000 PE=3 ...	[more]
tr\|A0A1S3TRK2\|A0A1S3TRK2_VIGRR	7.7e-57	84.83	Histone H2A OS=Vigna radiata var. radiata OX=3916 GN=LOC106758024 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR032458	Histone_H2A_CS
IPR009072	Histone-fold
IPR032454	Histone_H2A_C
IPR007125	Histone_H2A/H2B/H3
IPR002119	Histone_H2A

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22176-RA	Carg22176-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 63..76 score: 89.46 coord: 48..63 score: 75.0 coord: 77..91 score: 78.86 coord: 19..41 score: 67.99 coord: 105..123 score: 66.67
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 8..128 e-value: 8.5E-76 score: 267.8
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 9..125 e-value: 1.93143E-66 score: 198.713
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 3..94 e-value: 5.9E-15 score: 55.7
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 97..130 e-value: 5.5E-18 score: 64.3
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 8..134 e-value: 1.2E-60 score: 204.9
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 22..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 1..141
None	No IPR available	PANTHER	PTHR23430:SF207	SUBFAMILY NOT NAMED	coord: 1..141
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 27..33

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22176	Cla014719	Watermelon (97103) v1	carwmB0861
Carg22176	Csa7G390230	Cucumber (Chinese Long) v2	carcuB0875
Carg22176	MELO3C015882	Melon (DHL92) v3.5.1	carmeB0849
Carg22176	ClCG09G006630	Watermelon (Charleston Gray)	carwcgB0833
Carg22176	CSPI07G16620	Wild cucumber (PI 183967)	carcpiB0895
Carg22176	Cucsa.084750	Cucumber (Gy14) v1	carcgyB0980
Carg22176	CmaCh08G003760	Cucurbita maxima (Rimu)	carcmaB1192
Carg22176	CmaCh17G011420	Cucurbita maxima (Rimu)	carcmaB1191
Carg22176	CmoCh08G003700	Cucurbita moschata (Rifu)	carcmoB1161
Carg22176	CmoCh17G011140	Cucurbita moschata (Rifu)	carcmoB1160
Carg22176	Lsi02G023340	Bottle gourd (USVL1VR-Ls)	carlsiB782
Carg22176	Cp4.1LG12g11890	Cucurbita pepo (Zucchini)	carcpeB1198
Carg22176	Cp4.1LG12g05230	Cucurbita pepo (Zucchini)	carcpeB1199
Carg22176	CsGy7G015100	Cucumber (Gy14) v2	carcgybB0849
Carg22176	MELO3C015882.2	Melon (DHL92) v3.6.1	carmedB0860
Carg22176	CsaV3_7G028390	Cucumber (Chinese Long) v3	carcucB0899
Carg22176	Cla97C09G169220	Watermelon (97103) v2	carwmbB0897
Carg22176	Bhi09G000815	Wax gourd	carwgoB1004

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22176	Carg07217	Silver-seed gourd	carcarB135

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22176	Cucumber (Gy14) v2	carcgybB0850
Carg22176	Cucumber (Gy14) v1	carcgyB0981
Carg22176	Cucurbita pepo (Zucchini)	carcpeB1200
Carg22176	Cucurbita pepo (Zucchini)	carcpeB1201