Cp4.1LG12g05230 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g05230
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHistone H2A
LocationCp4.1LG12 : 8260046 .. 8260969 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCATCGGCTTCGACCAAGGGCGGCAGAGGGAAACCAAAGGCCACGAAGTCTGTTTCGCGGTCTCAGAAGGCTGGTCTTCAGTTTCCCGTCGGTCGTATTGCGAGGTTTCTTAAGGCCGGTAAGTATGCGGAGCGCGTTGGCGCCGGTGCTCCCGTCTACCTCTCCGCTGTCCTTGAATATCTGGCTGCCGAGGTTAGTGCTTGTTCTTCTCATCAGATCTTTTACTTGTGTTTCCGATCTGTTTATCTGTGGAGTTGTTTTCGTCTGATTGTGATGAAGTGAGGTGCTGTAGTGTAGTGCTTTGATCACTTGAATCGAAATTCTTATATCTGATTTTGTTGGGTTTCGTCTGCTTTGGCTCTGGAATTGATTTGGAGATGATGAATTTCGATTTGTTTCTTTAAATTGATGAAGAAACTATTTGAAATTAGGTTCACCATTGCATAGTAATCTCGAGCTTTGAATTGTGGCCTCCCTTTTTCTCTTGCATGTCATCCAATTGGCTAGAAATTGATACTGAATGCAGCTTATTTAGTTTTACTTGGTGAATAAGATGCCAAAGCCACAAGACTATGTGAGTTTGTTCTTTGGATGAACGAAGTTTCATTTGGGTTCATCCCTATTGTTTCTGTACAATGATGATGAATTGGTTTTGCATTTAAAGTAGCTGAGTATACTAAAAATCTTCATTTGCAGGTGCTTGAGCTTGCAGGCAATGCTGCCAGGGACAACAAGAAGAACCGTATTGTTCCGAGGCACATACAGCTCGCAGTCCGTAACGACGAAGAGCTAAGCAAGCTTTTGGGTGATGTGACCATTGCAAATGGTGGAGTGTTGCCGAATATCCATCAAAATCTCTTGCCTAAGAAAGCCGGGTCGGGTAAAGGCGACATTGGATCTGCATCTCAAGAGTTCTAA

mRNA sequence

ATGAGTTCATCGGCTTCGACCAAGGGCGGCAGAGGGAAACCAAAGGCCACGAAGTCTGTTTCGCGGTCTCAGAAGGCTGGTCTTCAGTTTCCCGTCGGTCGTATTGCGAGGTTTCTTAAGGCCGGTAAGTATGCGGAGCGCGTTGGCGCCGGTGCTCCCGTCTACCTCTCCGCTGTCCTTGAATATCTGGCTGCCGAGGTGCTTGAGCTTGCAGGCAATGCTGCCAGGGACAACAAGAAGAACCGTATTGTTCCGAGGCACATACAGCTCGCAGTCCGTAACGACGAAGAGCTAAGCAAGCTTTTGGGTGATGTGACCATTGCAAATGGTGGAGTGTTGCCGAATATCCATCAAAATCTCTTGCCTAAGAAAGCCGGGTCGGGTAAAGGCGACATTGGATCTGCATCTCAAGAGTTCTAA

Coding sequence (CDS)

ATGAGTTCATCGGCTTCGACCAAGGGCGGCAGAGGGAAACCAAAGGCCACGAAGTCTGTTTCGCGGTCTCAGAAGGCTGGTCTTCAGTTTCCCGTCGGTCGTATTGCGAGGTTTCTTAAGGCCGGTAAGTATGCGGAGCGCGTTGGCGCCGGTGCTCCCGTCTACCTCTCCGCTGTCCTTGAATATCTGGCTGCCGAGGTGCTTGAGCTTGCAGGCAATGCTGCCAGGGACAACAAGAAGAACCGTATTGTTCCGAGGCACATACAGCTCGCAGTCCGTAACGACGAAGAGCTAAGCAAGCTTTTGGGTGATGTGACCATTGCAAATGGTGGAGTGTTGCCGAATATCCATCAAAATCTCTTGCCTAAGAAAGCCGGGTCGGGTAAAGGCGACATTGGATCTGCATCTCAAGAGTTCTAA

Protein sequence

MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKAGSGKGDIGSASQEF
Homology
[Close]
BLAST of Cp4.1LG12g05230 vs. Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.7e-64
Identity = 129/139 (92.81%), Postives = 133/139 (95.68%), Query Frame = 1 

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+A+TKGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSTATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKVGKGKGEIGSASQEF 139

[Close]
BLAST of Cp4.1LG12g05230 vs. Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-62
Identity = 126/138 (91.30%), Postives = 128/138 (92.75%), Query Frame = 1 

Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]
BLAST of Cp4.1LG12g05230 vs. Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 4.6e-62
Identity = 125/138 (90.58%), Postives = 128/138 (92.75%), Query Frame = 1 

Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]
BLAST of Cp4.1LG12g05230 vs. Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.3e-61
Identity = 125/137 (91.24%), Postives = 130/137 (94.89%), Query Frame = 1 

Query: 3   SSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEY 62
           SS+  KGGRGK K+TKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEY
Sbjct: 2   SSSGAKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEY 61

Query: 63  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLP 122
           LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLP
Sbjct: 62  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLP 121

Query: 123 KKAGSGKGDIGSASQEF 140
           KK+G  KG+IGSASQEF
Sbjct: 122 KKSGKDKGEIGSASQEF 138

[Close]
BLAST of Cp4.1LG12g05230 vs. Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.8e-58
Identity = 121/137 (88.32%), Postives = 124/137 (90.51%), Query Frame = 1 

Query: 3   SSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEY 62
           SSA   GGRGK K +KSVSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAVLEY
Sbjct: 2   SSAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEY 61

Query: 63  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLP 122
           LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQ LLP
Sbjct: 62  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLP 121

Query: 123 KKAGSGKGDIGSASQEF 140
           KK G  K DIGSASQEF
Sbjct: 122 KKGGKDKADIGSASQEF 138

[Close]
BLAST of Cp4.1LG12g05230 vs. TrEMBL
Match: A0A0A0K7H2_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_7G390230 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 7.4e-67
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 1 

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]
BLAST of Cp4.1LG12g05230 vs. TrEMBL
Match: A0A0B0PK64_GOSAR (Histone H2A OS=Gossypium arboreum GN=F383_32368 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-63
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 1 

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ STKGGRGKPK++KSVSRSQKAGLQFPVGRIARFLKAGKYA+RVGAGAPVYLSAVL
Sbjct: 1   MSSTVSTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKGDIGSASQEF
Sbjct: 121 LPKKIGKGKGDIGSASQEF 139

[Close]
BLAST of Cp4.1LG12g05230 vs. TrEMBL
Match: A0A061DQ08_THECC (Histone H2A OS=Theobroma cacao GN=TCM_004504 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-63
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 1 

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ STKGGRGKPK++KSVSRSQKAGLQFPVGRIARFLKAGKYA+RVGAGAPVYLSAVL
Sbjct: 1   MSSTGSTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKGDIGSASQEF
Sbjct: 121 LPKKIGKGKGDIGSASQEF 139

[Close]
BLAST of Cp4.1LG12g05230 vs. TrEMBL
Match: A0A0D2QSD8_GOSRA (Histone H2A OS=Gossypium raimondii GN=B456_004G054400 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-63
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 1 

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ STKGGRGKPK++KSVSRSQKAGLQFPVGRIARFLKAGKYA+RVGAGAPVYLSAVL
Sbjct: 1   MSSTVSTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKGDIGSASQEF
Sbjct: 121 LPKKIGKGKGDIGSASQEF 139

[Close]
BLAST of Cp4.1LG12g05230 vs. TrEMBL
Match: A0A067JNE6_JATCU (Histone H2A OS=Jatropha curcas GN=JCGZ_22006 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-63
Identity = 131/139 (94.24%), Postives = 134/139 (96.40%), Query Frame = 1 

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS  STKGGRGKPK++KSVSRSQKAGLQFPVGRIARFLKAGKYA+RVGAGAPVYLSAVL
Sbjct: 145 MSSGGSTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVL 204

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQNL
Sbjct: 205 EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNL 264

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKGDIGSASQEF
Sbjct: 265 LPKKMGKGKGDIGSASQEF 283

[Close]
BLAST of Cp4.1LG12g05230 vs. TAIR10
Match: AT1G54690.1 (AT1G54690.1 gamma histone variant H2AX)

HSP 1 Score: 239.6 bits (610), Expect = 1.2e-63
Identity = 126/138 (91.30%), Postives = 128/138 (92.75%), Query Frame = 1 

Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]
BLAST of Cp4.1LG12g05230 vs. TAIR10
Match: AT1G08880.1 (AT1G08880.1 Histone superfamily protein)

HSP 1 Score: 238.4 bits (607), Expect = 2.6e-63
Identity = 125/138 (90.58%), Postives = 128/138 (92.75%), Query Frame = 1 

Query: 2   SSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S +TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]
BLAST of Cp4.1LG12g05230 vs. TAIR10
Match: AT4G27230.1 (AT4G27230.1 histone H2A 2)

HSP 1 Score: 202.2 bits (513), Expect = 2.1e-52
Identity = 109/124 (87.90%), Postives = 111/124 (89.52%), Query Frame = 1 

Query: 10  GRGKP----KATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 69
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKA 129
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]
BLAST of Cp4.1LG12g05230 vs. TAIR10
Match: AT5G54640.1 (AT5G54640.1 Histone superfamily protein)

HSP 1 Score: 198.4 bits (503), Expect = 3.0e-51
Identity = 108/129 (83.72%), Postives = 112/129 (86.82%), Query Frame = 1 

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           M+    T G  G  KAT   SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVL
Sbjct: 1   MAGRGKTLGSGGAKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  L
Sbjct: 61  EYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLL 120

Query: 121 LPKKAGSGK 130
           LPKKAG+ K
Sbjct: 121 LPKKAGASK 126

[Close]
BLAST of Cp4.1LG12g05230 vs. TAIR10
Match: AT3G20670.1 (AT3G20670.1 histone H2A 13)

HSP 1 Score: 196.1 bits (497), Expect = 1.5e-50
Identity = 106/124 (85.48%), Postives = 109/124 (87.90%), Query Frame = 1 

Query: 10  GRGKPK----ATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 69
           GRGK      A KS SRS KAGLQFPVGRIARFLK GKYA RVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKA 129
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKA 122

[Close]
BLAST of Cp4.1LG12g05230 vs. NCBI nr
Match: gi|449462308|ref|XP_004148883.1| (PREDICTED: histone H2AX [Cucumis sativus])

HSP 1 Score: 261.2 bits (666), Expect = 1.1e-66
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 1 

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]
BLAST of Cp4.1LG12g05230 vs. NCBI nr
Match: gi|659101085|ref|XP_008451417.1| (PREDICTED: histone H2AX [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 3.1e-66
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 1 

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSAS+KGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]
BLAST of Cp4.1LG12g05230 vs. NCBI nr
Match: gi|720088934|ref|XP_010244611.1| (PREDICTED: histone H2AX [Nelumbo nucifera])

HSP 1 Score: 252.3 bits (643), Expect = 4.9e-64
Identity = 133/139 (95.68%), Postives = 135/139 (97.12%), Query Frame = 1 

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPKA+KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKIGKGKGEIGSASQEF 139

[Close]
BLAST of Cp4.1LG12g05230 vs. NCBI nr
Match: gi|743846516|ref|XP_010938857.1| (PREDICTED: histone H2AX [Elaeis guineensis])

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-63
Identity = 132/139 (94.96%), Postives = 135/139 (97.12%), Query Frame = 1 

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASTKGGRGKPK++KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ L
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKQGKGKGEIGSASQEF 139

[Close]
BLAST of Cp4.1LG12g05230 vs. NCBI nr
Match: gi|590718120|ref|XP_007050747.1| (Gamma histone variant H2AX [Theobroma cacao])

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-63
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 1 

Query: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ STKGGRGKPK++KSVSRSQKAGLQFPVGRIARFLKAGKYA+RVGAGAPVYLSAVL
Sbjct: 1   MSSTGSTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYADRVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQNL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKGDIGSASQEF
Sbjct: 121 LPKKIGKGKGDIGSASQEF 139

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g05230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
H2AX_CICAR1.7e-6492.81Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2AXB_ARATH2.1e-6291.30Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1[more]
H2AXA_ARATH4.6e-6290.58Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1[more]
H2AX_PICAB1.3e-6191.24Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2AXB_ORYSJ1.8e-5888.32Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1[more]
BLAST of Cp4.1LG12g05230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7H2_CUCSA7.4e-6799.28Histone H2A OS=Cucumis sativus GN=Csa_7G390230 PE=3 SV=1[more]
A0A0B0PK64_GOSAR1.0e-6394.24Histone H2A OS=Gossypium arboreum GN=F383_32368 PE=3 SV=1[more]
A0A061DQ08_THECC1.0e-6394.24Histone H2A OS=Theobroma cacao GN=TCM_004504 PE=3 SV=1[more]
A0A0D2QSD8_GOSRA1.0e-6394.24Histone H2A OS=Gossypium raimondii GN=B456_004G054400 PE=3 SV=1[more]
A0A067JNE6_JATCU1.3e-6394.24Histone H2A OS=Jatropha curcas GN=JCGZ_22006 PE=3 SV=1[more]
BLAST of Cp4.1LG12g05230 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G54690.11.2e-6391.30 gamma histone variant H2AX[more]
AT1G08880.12.6e-6390.58 Histone superfamily protein[more]
AT4G27230.12.1e-5287.90 histone H2A 2[more]
AT5G54640.13.0e-5183.72 Histone superfamily protein[more]
AT3G20670.11.5e-5085.48 histone H2A 13[more]
BLAST of Cp4.1LG12g05230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462308|ref|XP_004148883.1|1.1e-6699.28PREDICTED: histone H2AX [Cucumis sativus][more]
gi|659101085|ref|XP_008451417.1|3.1e-6698.56PREDICTED: histone H2AX [Cucumis melo][more]
gi|720088934|ref|XP_010244611.1|4.9e-6495.68PREDICTED: histone H2AX [Nelumbo nucifera][more]
gi|743846516|ref|XP_010938857.1|1.4e-6394.96PREDICTED: histone H2AX [Elaeis guineensis][more]
gi|590718120|ref|XP_007050747.1|1.4e-6394.24Gamma histone variant H2AX [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR007125Histone_H2A/H2B/H3
IPR002119Histone_H2A
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g05230.1Cp4.1LG12g05230.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 47..62
score: 1.1E-51coord: 62..75
score: 1.1E-51coord: 18..40
score: 1.1E-51coord: 76..90
score: 1.1E-51coord: 104..122
score: 1.1
IPR002119Histone H2ASMARTSM00414h2a4coord: 7..127
score: 8.0
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 12..93
score: 8.7
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 11..126
score: 4.6
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 21..124
score: 2.4
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 4..139
score: 2.8E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g05230Cucsa.084750Cucumber (Gy14) v1cgycpeB0150
Cp4.1LG12g05230CmaCh17G011420Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g05230CmoCh17G011140Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g05230Csa7G390230Cucumber (Chinese Long) v2cpecuB158
Cp4.1LG12g05230MELO3C015883Melon (DHL92) v3.5.1cpemeB124
Cp4.1LG12g05230ClCG09G006630Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g05230CSPI07G16620Wild cucumber (PI 183967)cpecpiB160
Cp4.1LG12g05230Lsi02G023350Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g05230MELO3C015882.2Melon (DHL92) v3.6.1cpemedB154
Cp4.1LG12g05230CsaV3_7G028390Cucumber (Chinese Long) v3cpecucB0186
Cp4.1LG12g05230Bhi09G000815Wax gourdcpewgoB0205
Cp4.1LG12g05230CsGy7G015100Cucumber (Gy14) v2cgybcpeB901
Cp4.1LG12g05230Carg22176Silver-seed gourdcarcpeB1199
Cp4.1LG12g05230Carg07217Silver-seed gourdcarcpeB0159
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g05230Cp4.1LG12g11890Cucurbita pepo (Zucchini)cpecpeB152
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g05230Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG12g05230Cucurbita maxima (Rimu)cmacpeB902
Cp4.1LG12g05230Cucurbita moschata (Rifu)cmocpeB336
Cp4.1LG12g05230Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g05230Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g05230Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g05230Watermelon (97103) v1cpewmB131
Cp4.1LG12g05230Watermelon (97103) v1cpewmB132
Cp4.1LG12g05230Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g05230Melon (DHL92) v3.6.1cpemedB151
Cp4.1LG12g05230Silver-seed gourdcarcpeB0158
Cp4.1LG12g05230Silver-seed gourdcarcpeB1198
Cp4.1LG12g05230Cucumber (Chinese Long) v3cpecucB0183
Cp4.1LG12g05230Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g05230Wax gourdcpewgoB0203