MELO3C015883 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015883
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Histone H2A
Location	chr1 : 30154700 .. 30156053 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTATTTTTTTTTCTCCTGTCAAGTTTCGCATTCTCTAGGGTTTCGATTATCCGCCGGAAAGGATCGTACAATGAGCTCATCGGCTTCGTCAAAGGGTGGTAGAGGGAAACCCAAAGCCACAAAGTCTGTTTCGCGGTCTCAGAAAGCTGGTCTACAGTTCCCTGTCGGTCGTATTGCTCGGTTTCTCAAGGCCGGTAAGTATGCGGAGCGTGTTGGTGCCGGTGCTCCCGTCTATCTCTCCGCCGTCCTCGAATATCTGGCCGCCGAGGTTAGTGCTTGATCTTCAAATCTGATCTTTTACTCGTTTCTGATTTGTTTGTCTGTGTTGTAGTGTTGTGGTCTGATCACTTGAATCGGAATTATCATATTTTATTTAGTTTGGTTCCTTCTTTGGCTCTGGAATAGATTTGTAGAAGAGAAATTTCATCTTCTTTAGAAAATTTCTGTTGATCAGTACAGAAATGGATGAAGGTTTGTGATGATATTGAAATTAGGGATTGTGATTGCATGAAATTGAAGTTACTATCACAGCTTTCAGAATAGTTATCTTGAGCTTTGAATTTTGGGCTTCTAATTGGTTATTAGTTTGAATTCAATGCACCTTAAATTAGTTTTGCTTACTGAATTAGGTCGTAAAGCCTCAAGATAACTTGGTTGTTTCTTTATGTTAGGAAATCAACAAATAAAGAAAGCAAAAAAGTGAAAACAGTGGAGAAATCAACACAAAACAGTGTGTTGGTTATGTTCTTGAACAGTGGGAGCGATCAGATTTTATTTGAGAGTATCAGAGTACGAATTTGGAGTCGTAATTAGTGTTAGATTGTTTATATAGGACACCTCTCTAAACTGTAGGATTAAAAATGTAAATAGCATAAATACAAGTACACATTAGGTTTTGTCGACATTGTCTTTGGGCCTCTTTCGAAGTGTGTCACTCTTGAACTCTGGTTTATTAACTAGTGAGTGAGATGTACTGATTATTTGGAGTGTTAAGATTACACATTCAAGGCATTCTAACGCTTCAGATGAATGAAGTTTCATTTGAATTCATCCCAATAGTTTCTTAACGATAATGATGATTTTGTTTTGCATTTGAGGTAGCAATATATACTAAAAAACTCCATTTGTAGGTGCTTGAGCTTGCAGGCAATGCCGCCAGAGACAACAAGAAAAATCGCATTGTTCCGAGACACATACAGCTTGCAGTCCGAAATGACGAAGAGTTAAGCAAGCTTTTGGGTGATGTGACCATTGCAAATGGGGGTGTGTTGCCTAATATCCATCAAACTCTCTTGCCTAAGAAGGCCGGATCAGGAAAAGGTGACATCGGATCTGCATCACAAGAGTTTTAA

mRNA sequence

ATTTATTTTTTTTTCTCCTGTCAAGTTTCGCATTCTCTAGGGTTTCGATTATCCGCCGGAAAGGATCGTACAATGAGCTCATCGGCTTCGTCAAAGGGTGGTAGAGGGAAACCCAAAGCCACAAAGTCTGTTTCGCGGTCTCAGAAAGCTGGTCTACAGTTCCCTGTCGGTCGTATTGCTCGGTTTCTCAAGGCCGGTAAGTATGCGGAGCGTGTTGGTGCCGGTGCTCCCGTCTATCTCTCCGCCGTCCTCGAATATCTGGCCGCCGAGGTGCTTGAGCTTGCAGGCAATGCCGCCAGAGACAACAAGAAAAATCGCATTGTTCCGAGACACATACAGCTTGCAGTCCGAAATGACGAAGAGTTAAGCAAGCTTTTGGGTGATGTGACCATTGCAAATGGGGGTGTGTTGCCTAATATCCATCAAACTCTCTTGCCTAAGAAGGCCGGATCAGGAAAAGGTGACATCGGATCTGCATCACAAGAGTTTTAA

Coding sequence (CDS)

ATGAGCTCATCGGCTTCGTCAAAGGGTGGTAGAGGGAAACCCAAAGCCACAAAGTCTGTTTCGCGGTCTCAGAAAGCTGGTCTACAGTTCCCTGTCGGTCGTATTGCTCGGTTTCTCAAGGCCGGTAAGTATGCGGAGCGTGTTGGTGCCGGTGCTCCCGTCTATCTCTCCGCCGTCCTCGAATATCTGGCCGCCGAGGTGCTTGAGCTTGCAGGCAATGCCGCCAGAGACAACAAGAAAAATCGCATTGTTCCGAGACACATACAGCTTGCAGTCCGAAATGACGAAGAGTTAAGCAAGCTTTTGGGTGATGTGACCATTGCAAATGGGGGTGTGTTGCCTAATATCCATCAAACTCTCTTGCCTAAGAAGGCCGGATCAGGAAAAGGTGACATCGGATCTGCATCACAAGAGTTTTAA

Protein sequence

MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLLPKKAGSGKGDIGSASQEF*

Homology

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BLAST of MELO3C015883 vs. Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-66
Identity = 129/139 (92.81%), Postives = 132/139 (94.96%), Query Frame = 1


Query: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+A++KGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSTATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTL
Sbjct: 61  EYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKVGKGKGEIGSASQEF 139

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BLAST of MELO3C015883 vs. Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.3e-64
Identity = 126/138 (91.30%), Postives = 127/138 (92.03%), Query Frame = 1


Query: 2   SSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S ++KGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

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BLAST of MELO3C015883 vs. Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 2.9e-64
Identity = 125/138 (90.58%), Postives = 127/138 (92.03%), Query Frame = 1


Query: 2   SSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S ++KGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

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BLAST of MELO3C015883 vs. Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 6.5e-64
Identity = 125/137 (91.24%), Postives = 129/137 (94.16%), Query Frame = 1


Query: 3   SSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEY 62
           SS+ +KGGRGK K+TKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEY
Sbjct: 2   SSSGAKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEY 61

Query: 63  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLLP 122
           LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLP
Sbjct: 62  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLP 121

Query: 123 KKAGSGKGDIGSASQEF 140
           KK+G  KG+IGSASQEF
Sbjct: 122 KKSGKDKGEIGSASQEF 138

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BLAST of MELO3C015883 vs. Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.9e-61
Identity = 122/137 (89.05%), Postives = 123/137 (89.78%), Query Frame = 1


Query: 3   SSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEY 62
           SSA   GGRGK K +KSVSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAVLEY
Sbjct: 2   SSAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEY 61

Query: 63  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLLP 122
           LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQTLLP
Sbjct: 62  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLP 121

Query: 123 KKAGSGKGDIGSASQEF 140
           KK G  K DIGSASQEF
Sbjct: 122 KKGGKDKADIGSASQEF 138

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BLAST of MELO3C015883 vs. TrEMBL
Match: A0A0A0K7H2_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_7G390230 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 6.1e-69
Identity = 138/139 (99.28%), Postives = 139/139 (100.00%), Query Frame = 1


Query: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSAS+KGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

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BLAST of MELO3C015883 vs. TrEMBL
Match: A0A0S3S5B9_PHAAN (Histone H2A OS=Vigna angularis var. angularis GN=Vigan.05G145900 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.4e-65
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ S+KGGRGKPKA+KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSTGSTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKVGKGKGEIGSASQEF 139

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BLAST of MELO3C015883 vs. TrEMBL
Match: A5BCX3_VITVI (Histone H2A OS=Vitis vinifera GN=VIT_14s0030g00450 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.4e-65
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ S+KGGRGKPKA+KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSTGSTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKTGKGKGEIGSASQEF 139

[Close]

BLAST of MELO3C015883 vs. TrEMBL
Match: A0A0L9VD09_PHAAN (Histone H2A OS=Phaseolus angularis GN=LR48_Vigan09g156200 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.4e-65
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ S+KGGRGKPKA+KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSTGSTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKVGKGKGEIGSASQEF 139

[Close]

BLAST of MELO3C015883 vs. TrEMBL
Match: A0A151R597_CAJCA (Histone H2A OS=Cajanus cajan GN=KK1_041069 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 5.4e-65
Identity = 130/138 (94.20%), Postives = 134/138 (97.10%), Query Frame = 1


Query: 2   SSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           S+  S+KGGRGKPKA+KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE
Sbjct: 3   STGGSTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 62

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLL 121
           YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLL
Sbjct: 63  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 122

Query: 122 PKKAGSGKGDIGSASQEF 140
           PKKAG GKG+IGSASQEF
Sbjct: 123 PKKAGKGKGEIGSASQEF 140

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BLAST of MELO3C015883 vs. TAIR10
Match: AT1G54690.1 (AT1G54690.1 gamma histone variant H2AX)

HSP 1 Score: 246.9 bits (629), Expect = 7.4e-66
Identity = 126/138 (91.30%), Postives = 127/138 (92.03%), Query Frame = 1


Query: 2   SSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S ++KGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]

BLAST of MELO3C015883 vs. TAIR10
Match: AT1G08880.1 (AT1G08880.1 Histone superfamily protein)

HSP 1 Score: 245.7 bits (626), Expect = 1.6e-65
Identity = 125/138 (90.58%), Postives = 127/138 (92.03%), Query Frame = 1


Query: 2   SSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + S ++KGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLL 121
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTLL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 122 PKKAGSGKGDIGSASQEF 140
           P K G  KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]

BLAST of MELO3C015883 vs. TAIR10
Match: AT4G27230.1 (AT4G27230.1 histone H2A 2)

HSP 1 Score: 206.8 bits (525), Expect = 8.5e-54
Identity = 109/124 (87.90%), Postives = 109/124 (87.90%), Query Frame = 1


Query: 10  GRGKP----KATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 69
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLLPKKA 129
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of MELO3C015883 vs. TAIR10
Match: AT5G54640.1 (AT5G54640.1 Histone superfamily protein)

HSP 1 Score: 204.1 bits (518), Expect = 5.5e-53
Identity = 107/124 (86.29%), Postives = 109/124 (87.90%), Query Frame = 1


Query: 10  GRGKPK----ATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 69
           GRGK      A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLLPKKA 129
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of MELO3C015883 vs. TAIR10
Match: AT3G20670.1 (AT3G20670.1 histone H2A 13)

HSP 1 Score: 200.7 bits (509), Expect = 6.1e-52
Identity = 106/124 (85.48%), Postives = 107/124 (86.29%), Query Frame = 1


Query: 10  GRGKPK----ATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 69
           GRGK      A KS SRS KAGLQFPVGRIARFLK GKYA RVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTLLPKKA 129
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKA 122

[Close]

BLAST of MELO3C015883 vs. NCBI nr
Match: gi|659101085|ref|XP_008451417.1| (PREDICTED: histone H2AX [Cucumis melo])

HSP 1 Score: 269.2 bits (687), Expect = 3.9e-69
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1


Query: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of MELO3C015883 vs. NCBI nr
Match: gi|449462308|ref|XP_004148883.1| (PREDICTED: histone H2AX [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 8.8e-69
Identity = 138/139 (99.28%), Postives = 139/139 (100.00%), Query Frame = 1


Query: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSAS+KGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKKAGSGKGDIGSASQEF
Sbjct: 121 LPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of MELO3C015883 vs. NCBI nr
Match: gi|720088934|ref|XP_010244611.1| (PREDICTED: histone H2AX [Nelumbo nucifera])

HSP 1 Score: 259.2 bits (661), Expect = 4.1e-66
Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 1


Query: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSAS+KGGRGKPKA+KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKIGKGKGEIGSASQEF 139

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BLAST of MELO3C015883 vs. NCBI nr
Match: gi|743846516|ref|XP_010938857.1| (PREDICTED: histone H2AX [Elaeis guineensis])

HSP 1 Score: 257.7 bits (657), Expect = 1.2e-65
Identity = 132/139 (94.96%), Postives = 136/139 (97.84%), Query Frame = 1


Query: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSAS+KGGRGKPK++KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKQGKGKGEIGSASQEF 139

[Close]

BLAST of MELO3C015883 vs. NCBI nr
Match: gi|225451096|ref|XP_002265878.1| (PREDICTED: histone H2AX [Vitis vinifera])

HSP 1 Score: 256.9 bits (655), Expect = 2.0e-65
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ S+KGGRGKPKA+KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSTGSTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQTL 120
           EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQTL
Sbjct: 61  EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 120

Query: 121 LPKKAGSGKGDIGSASQEF 140
           LPKK G GKG+IGSASQEF
Sbjct: 121 LPKKTGKGKGEIGSASQEF 139

The following BLAST results are available for this feature:

BLAST of MELO3C015883 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2AX_CICAR	1.4e-66	92.81	Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1	[more]
H2AXB_ARATH	1.3e-64	91.30	Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1	[more]
H2AXA_ARATH	2.9e-64	90.58	Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1	[more]
H2AX_PICAB	6.5e-64	91.24	Histone H2AX OS=Picea abies PE=2 SV=1	[more]
H2AXB_ORYSJ	3.9e-61	89.05	Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1	[more]

BLAST of MELO3C015883 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7H2_CUCSA	6.1e-69	99.28	Histone H2A OS=Cucumis sativus GN=Csa_7G390230 PE=3 SV=1	[more]
A0A0S3S5B9_PHAAN	1.4e-65	94.24	Histone H2A OS=Vigna angularis var. angularis GN=Vigan.05G145900 PE=3 SV=1	[more]
A5BCX3_VITVI	1.4e-65	94.24	Histone H2A OS=Vitis vinifera GN=VIT_14s0030g00450 PE=3 SV=1	[more]
A0A0L9VD09_PHAAN	1.4e-65	94.24	Histone H2A OS=Phaseolus angularis GN=LR48_Vigan09g156200 PE=3 SV=1	[more]
A0A151R597_CAJCA	5.4e-65	94.20	Histone H2A OS=Cajanus cajan GN=KK1_041069 PE=3 SV=1	[more]

BLAST of MELO3C015883 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54690.1	7.4e-66	91.30	gamma histone variant H2AX	[more]
AT1G08880.1	1.6e-65	90.58	Histone superfamily protein	[more]
AT4G27230.1	8.5e-54	87.90	histone H2A 2	[more]
AT5G54640.1	5.5e-53	86.29	Histone superfamily protein	[more]
AT3G20670.1	6.1e-52	85.48	histone H2A 13	[more]

BLAST of MELO3C015883 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101085\|ref\|XP_008451417.1\|	3.9e-69	100.00	PREDICTED: histone H2AX [Cucumis melo]	[more]
gi\|449462308\|ref\|XP_004148883.1\|	8.8e-69	99.28	PREDICTED: histone H2AX [Cucumis sativus]	[more]
gi\|720088934\|ref\|XP_010244611.1\|	4.1e-66	95.68	PREDICTED: histone H2AX [Nelumbo nucifera]	[more]
gi\|743846516\|ref\|XP_010938857.1\|	1.2e-65	94.96	PREDICTED: histone H2AX [Elaeis guineensis]	[more]
gi\|225451096\|ref\|XP_002265878.1\|	2.0e-65	94.24	PREDICTED: histone H2AX [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002119	Histone_H2A
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015883T1	MELO3C015883T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 47..62 score: 4.4E-52coord: 62..75 score: 4.4E-52coord: 18..40 score: 4.4E-52coord: 76..90 score: 4.4E-52coord: 104..122 score: 4.4
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 7..127 score: 8.6
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 12..93 score: 9.0
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 11..126 score: 7.3
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 21..124 score: 2.1
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 4..139 score: 5.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015883	Cp4.1LG12g05230	Cucurbita pepo (Zucchini)	cpemeB124

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015883	Cucurbita maxima (Rimu)	cmameB327
MELO3C015883	Cucurbita maxima (Rimu)	cmameB825
MELO3C015883	Cucurbita moschata (Rifu)	cmomeB319
MELO3C015883	Cucurbita moschata (Rifu)	cmomeB809
MELO3C015883	Wild cucumber (PI 183967)	cpimeB526
MELO3C015883	Wild cucumber (PI 183967)	cpimeB543
MELO3C015883	Cucumber (Chinese Long) v2	cumeB522
MELO3C015883	Cucumber (Chinese Long) v2	cumeB535
MELO3C015883	Watermelon (Charleston Gray)	mewcgB175
MELO3C015883	Watermelon (97103) v1	mewmB199
MELO3C015883	Cucurbita pepo (Zucchini)	cpemeB300
MELO3C015883	Bottle gourd (USVL1VR-Ls)	lsimeB186
MELO3C015883	Cucumber (Gy14) v2	cgybmeB458
MELO3C015883	Cucumber (Gy14) v2	cgybmeB473
MELO3C015883	Silver-seed gourd	carmeB0113
MELO3C015883	Silver-seed gourd	carmeB0849
MELO3C015883	Cucumber (Chinese Long) v3	cucmeB538
MELO3C015883	Cucumber (Chinese Long) v3	cucmeB553
MELO3C015883	Watermelon (97103) v2	mewmbB223
MELO3C015883	Wax gourd	mewgoB254
MELO3C015883	Cucumber (Gy14) v1	cgymeB094