MELO3C015882T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015882T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Histone H2A
Location	chr1 : 30153664 .. 30154578 (+)
Sequence length	834

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATCTCGTCGAAACAAAAATTGCTATTCTCTCCATAACGACCAACGAATCCCTTCCCAATCTCAACCGGAAAGCAGAGATGAGTTCTACTGAAGTTTCCACCAAGGGCGGCAGAGGCAGGAAAGCTTCCACCAAGTCTGTCTCCAGGTCTCACAAGGCTGGTCTTCAGTTCCCTGTCGGCCGTATCGCCAGGTACCTCAAGAAAGGCCGTTATGCACAGCGTGTCGGCTCAGGCTCCCCGGTCTACCTCTCCGCCGTCCTTGAATACCTTGCTGCTGAGGTTTGTAATTTCTAACTTCACTCTTAGTTCAATTCTCTCAGTTTACAGCGTTCTGATTTAGGTCTTTTGTTTTTGTTTTAGGTTTTGGAGTTGGCGGGGAATGCTGCGAGGGACAACAAGAAGAACAGAATCATTCCAAGACATATCCAGCTTGCGGTGAGGAACGATGAGGAATTGAGCAAGCTTTTGGGATCGGTTACGATTGCAAGCGGAGGAGTGATGCCGAAGATTCATCAATCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAAGCTGAAATCGGATCGGCCTCTCAGGAATTCTAGGTTATAGTAGAAATGGCCATTGATGAATAGAAAATCAAATAGTTATTTAGGTTATGTTAGATTTTGTCATTAACTTCAATGAATGGGTTCATTCTTCTTTTGGTTTGTAAATTTTGCGAAACGAGTTTCACTTAGATTTGTATCTGTTATCATCGCCGTCGTTCAAATTTTATGTTATTCAATGTAAATGCTGATGAAGTTCAACATTAATGAAATCGTATGTATTTATTTGAATTTTATTTTCTTGGAATCTGTATGTTTTCTCATGGACCAAACAAGAACTATGAGATTTGTCCCCATTGAAATTCGAAATCTTAATTGTATTT

mRNA sequence

TCATCTCGTCGAAACAAAAATTGCTATTCTCTCCATAACGACCAACGAATCCCTTCCCAATCTCAACCGGAAAGCAGAGATGAGTTCTACTGAAGTTTCCACCAAGGGCGGCAGAGGCAGGAAAGCTTCCACCAAGTCTGTCTCCAGGTCTCACAAGGCTGGTCTTCAGTTCCCTGTCGGCCGTATCGCCAGGTACCTCAAGAAAGGCCGTTATGCACAGCGTGTCGGCTCAGGCTCCCCGGTCTACCTCTCCGCCGTCCTTGAATACCTTGCTGCTGAGGTTTTGGAGTTGGCGGGGAATGCTGCGAGGGACAACAAGAAGAACAGAATCATTCCAAGACATATCCAGCTTGCGGTGAGGAACGATGAGGAATTGAGCAAGCTTTTGGGATCGGTTACGATTGCAAGCGGAGGAGTGATGCCGAAGATTCATCAATCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAAGCTGAAATCGGATCGGCCTCTCAGGAATTCTAGGTTATAGTAGAAATGGCCATTGATGAATAGAAAATCAAATAGTTATTTAGGTTATGTTAGATTTTGTCATTAACTTCAATGAATGGGTTCATTCTTCTTTTGGTTTGTAAATTTTGCGAAACGAGTTTCACTTAGATTTGTATCTGTTATCATCGCCGTCGTTCAAATTTTATGTTATTCAATGTAAATGCTGATGAAGTTCAACATTAATGAAATCGTATGTATTTATTTGAATTTTATTTTCTTGGAATCTGTATGTTTTCTCATGGACCAAACAAGAACTATGAGATTTGTCCCCATTGAAATTCGAAATCTTAATTGTATTT

Coding sequence (CDS)

ATGAGTTCTACTGAAGTTTCCACCAAGGGCGGCAGAGGCAGGAAAGCTTCCACCAAGTCTGTCTCCAGGTCTCACAAGGCTGGTCTTCAGTTCCCTGTCGGCCGTATCGCCAGGTACCTCAAGAAAGGCCGTTATGCACAGCGTGTCGGCTCAGGCTCCCCGGTCTACCTCTCCGCCGTCCTTGAATACCTTGCTGCTGAGGTTTTGGAGTTGGCGGGGAATGCTGCGAGGGACAACAAGAAGAACAGAATCATTCCAAGACATATCCAGCTTGCGGTGAGGAACGATGAGGAATTGAGCAAGCTTTTGGGATCGGTTACGATTGCAAGCGGAGGAGTGATGCCGAAGATTCATCAATCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAAGCTGAAATCGGATCGGCCTCTCAGGAATTCTAG

Protein sequence

MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNAKDKAEIGSASQEF*

Homology

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BLAST of MELO3C015882T1 vs. Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.7e-57
Identity = 116/142 (81.69%), Postives = 127/142 (89.44%), Query Frame = 1


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSS+    KGGRG+  STKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AV
Sbjct: 1   MSSS--GAKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRI+PRHIQLAVRNDEELSKLLG+VTIA+GGV+P IHQ 
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQV 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKK+G  KDK EIGSASQEF
Sbjct: 121 LLPKKSG--KDKGEIGSASQEF 138

[Close]

BLAST of MELO3C015882T1 vs. Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.5e-57
Identity = 116/142 (81.69%), Postives = 127/142 (89.44%), Query Frame = 1


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSST  +TKGGRG+  ++KSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAV
Sbjct: 1   MSST-ATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNK NRI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+
Sbjct: 61  LEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKK G  K K EIGSASQEF
Sbjct: 121 LLPKKVG--KGKGEIGSASQEF 139

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BLAST of MELO3C015882T1 vs. Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.8e-56
Identity = 111/133 (83.46%), Postives = 122/133 (91.73%), Query Frame = 1


Query: 10  GGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVL 69
           GGRG+   +KSVSRS KAGLQFPVGRIARYLK G+YA+RVG+G+PVYLSAVLEYLAAEVL
Sbjct: 8   GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67

Query: 70  ELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNA 129
           ELAGNAARDNKKNRI+PRHIQLAVRNDEELS+LLG+VTIA+GGV+P IHQ+LLPKK G  
Sbjct: 68  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG-- 127

Query: 130 KDKAEIGSASQEF 143
           KDKA+IGSASQEF
Sbjct: 128 KDKADIGSASQEF 138

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BLAST of MELO3C015882T1 vs. Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.8e-56
Identity = 111/133 (83.46%), Postives = 122/133 (91.73%), Query Frame = 1


Query: 10  GGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVL 69
           GGRG+   +KSVSRS KAGLQFPVGRIARYLK G+YA+RVG+G+PVYLSAVLEYLAAEVL
Sbjct: 8   GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67

Query: 70  ELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNA 129
           ELAGNAARDNKKNRI+PRHIQLAVRNDEELS+LLG+VTIA+GGV+P IHQ+LLPKK G  
Sbjct: 68  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG-- 127

Query: 130 KDKAEIGSASQEF 143
           KDKA+IGSASQEF
Sbjct: 128 KDKADIGSASQEF 138

[Close]

BLAST of MELO3C015882T1 vs. Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.0e-56
Identity = 111/136 (81.62%), Postives = 123/136 (90.44%), Query Frame = 1


Query: 7   STKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 66
           +TKGGRG+  +TKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 67  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 126
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+LLP K 
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 127 GNAKDKAEIGSASQEF 143
           G  K+K +IGSASQEF
Sbjct: 129 G--KNKGDIGSASQEF 142

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BLAST of MELO3C015882T1 vs. TrEMBL
Match: A0A0A0K525_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_7G390240 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 2.5e-70
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSSTEVSTKGGRG+KASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of MELO3C015882T1 vs. TrEMBL
Match: A0A0S3RXP1_PHAAN (Histone H2A OS=Vigna angularis var. angularis GN=Vigan.04G292000 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.4e-59
Identity = 126/145 (86.90%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MSSTEVST---KGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 60
           MSSTEVS    KGGRG+  +TKSVSRS KAGLQFPVGR+ARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVSAAAKKGGRGKPKTTKSVSRSSKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYL 60

Query: 61  SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 120
           +AVLEYLAAEVLELAGNAARDNKK RIIPRHIQLAVRNDEELSKL+GSVTIASGGV+PKI
Sbjct: 61  TAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKI 120

Query: 121 HQSLLPKKAGNAKDKAEIGSASQEF 143
           HQ+LLPKKAG  K KAEIGSASQEF
Sbjct: 121 HQNLLPKKAG--KGKAEIGSASQEF 143

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BLAST of MELO3C015882T1 vs. TrEMBL
Match: A0A0L9U7S5_PHAAN (Histone H2A OS=Phaseolus angularis GN=LR48_Vigan03g225700 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.4e-59
Identity = 126/145 (86.90%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MSSTEVST---KGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 60
           MSSTEVS    KGGRG+  +TKSVSRS KAGLQFPVGR+ARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVSAAAKKGGRGKPKTTKSVSRSSKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYL 60

Query: 61  SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 120
           +AVLEYLAAEVLELAGNAARDNKK RIIPRHIQLAVRNDEELSKL+GSVTIASGGV+PKI
Sbjct: 61  TAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKI 120

Query: 121 HQSLLPKKAGNAKDKAEIGSASQEF 143
           HQ+LLPKKAG  K KAEIGSASQEF
Sbjct: 121 HQNLLPKKAG--KGKAEIGSASQEF 143

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BLAST of MELO3C015882T1 vs. TrEMBL
Match: V7CZN0_PHAVU (Histone H2A OS=Phaseolus vulgaris GN=PHAVU_001G146100g PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.5e-59
Identity = 126/145 (86.90%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MSSTEVST---KGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 60
           MSSTEV+T   KGGRG+  +TKSVSRS KAGLQFPVGRIARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVATTTKKGGRGKPKTTKSVSRSSKAGLQFPVGRIARYLKAGRYAQRVGSGSPVYL 60

Query: 61  SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 120
           SAVLEYLAAEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELSKL+GSVTIASGGV+PKI
Sbjct: 61  SAVLEYLAAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKI 120

Query: 121 HQSLLPKKAGNAKDKAEIGSASQEF 143
           HQ+LLPKK G  K K EIGSASQEF
Sbjct: 121 HQNLLPKKTG--KGKGEIGSASQEF 143

[Close]

BLAST of MELO3C015882T1 vs. TrEMBL
Match: A0A0A0LW51_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_1G572950 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 7.6e-59
Identity = 120/142 (84.51%), Postives = 132/142 (92.96%), Query Frame = 1


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSST  STKGGRG+  +TKSVSRSHKAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKK G  KDK +IGSASQEF
Sbjct: 121 LLPKKVG--KDKGDIGSASQEF 140

[Close]

BLAST of MELO3C015882T1 vs. TAIR10
Match: AT1G08880.1 (AT1G08880.1 Histone superfamily protein)

HSP 1 Score: 219.2 bits (557), Expect = 1.7e-57
Identity = 111/136 (81.62%), Postives = 123/136 (90.44%), Query Frame = 1


Query: 7   STKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 66
           +TKGGRG+  +TKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 67  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 126
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+LLP K 
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 127 GNAKDKAEIGSASQEF 143
           G  K+K +IGSASQEF
Sbjct: 129 G--KNKGDIGSASQEF 142

[Close]

BLAST of MELO3C015882T1 vs. TAIR10
Match: AT1G54690.1 (AT1G54690.1 gamma histone variant H2AX)

HSP 1 Score: 218.8 bits (556), Expect = 2.2e-57
Identity = 111/136 (81.62%), Postives = 123/136 (90.44%), Query Frame = 1


Query: 7   STKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 66
           +TKGGRG+  +TKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 67  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 126
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+LLP K 
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 127 GNAKDKAEIGSASQEF 143
           G  K+K +IGSASQEF
Sbjct: 129 G--KNKGDIGSASQEF 142

[Close]

BLAST of MELO3C015882T1 vs. TAIR10
Match: AT4G27230.1 (AT4G27230.1 histone H2A 2)

HSP 1 Score: 193.0 bits (489), Expect = 1.3e-49
Identity = 99/128 (77.34%), Postives = 110/128 (85.94%), Query Frame = 1


Query: 11  GRGRK----ASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 70
           GRG++    A+ KS SRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 130
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIA+GGVMP IH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

Query: 131 GNAKDKAE 135
           G++K   E
Sbjct: 123 GSSKPTEE 130

[Close]

BLAST of MELO3C015882T1 vs. TAIR10
Match: AT1G51060.1 (AT1G51060.1 histone H2A 10)

HSP 1 Score: 190.7 bits (483), Expect = 6.4e-49
Identity = 95/122 (77.87%), Postives = 106/122 (86.89%), Query Frame = 1


Query: 13  GRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELA 72
           G  ++ K+ +RS KAGLQFPVGRIAR+LKKG+YA+RVG+G+PVYL+AVLEYLAAEVLELA
Sbjct: 9   GSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELA 68

Query: 73  GNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNAKDK 132
           GNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIA+GGVMP IH  LLPKK G +K  
Sbjct: 69  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASKPS 128

Query: 133 AE 135
           AE
Sbjct: 129 AE 130

[Close]

BLAST of MELO3C015882T1 vs. TAIR10
Match: AT3G20670.1 (AT3G20670.1 histone H2A 13)

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-48
Identity = 96/122 (78.69%), Postives = 104/122 (85.25%), Query Frame = 1


Query: 13  GRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELA 72
           G   + KS SRS KAGLQFPVGRIAR+LK G+YA RVG+G+PVYL+AVLEYLAAEVLELA
Sbjct: 9   GSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELA 68

Query: 73  GNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNAKDK 132
           GNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIA+GGVMP IH  LLPKKAG +K  
Sbjct: 69  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGASKPS 128

Query: 133 AE 135
           A+
Sbjct: 129 AD 130

[Close]

BLAST of MELO3C015882T1 vs. NCBI nr
Match: gi|659101083|ref|XP_008451416.1| (PREDICTED: histone H2AX-like [Cucumis melo])

HSP 1 Score: 273.9 bits (699), Expect = 1.6e-70
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of MELO3C015882T1 vs. NCBI nr
Match: gi|449462306|ref|XP_004148882.1| (PREDICTED: histone H2AX-like [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 3.6e-70
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSSTEVSTKGGRG+KASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of MELO3C015882T1 vs. NCBI nr
Match: gi|920695650|gb|KOM38875.1| (hypothetical protein LR48_Vigan03g225700 [Vigna angularis])

HSP 1 Score: 235.7 bits (600), Expect = 4.9e-59
Identity = 126/145 (86.90%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MSSTEVST---KGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 60
           MSSTEVS    KGGRG+  +TKSVSRS KAGLQFPVGR+ARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVSAAAKKGGRGKPKTTKSVSRSSKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYL 60

Query: 61  SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 120
           +AVLEYLAAEVLELAGNAARDNKK RIIPRHIQLAVRNDEELSKL+GSVTIASGGV+PKI
Sbjct: 61  TAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKI 120

Query: 121 HQSLLPKKAGNAKDKAEIGSASQEF 143
           HQ+LLPKKAG  K KAEIGSASQEF
Sbjct: 121 HQNLLPKKAG--KGKAEIGSASQEF 143

[Close]

BLAST of MELO3C015882T1 vs. NCBI nr
Match: gi|593798658|ref|XP_007162367.1| (hypothetical protein PHAVU_001G146100g [Phaseolus vulgaris])

HSP 1 Score: 235.3 bits (599), Expect = 6.4e-59
Identity = 126/145 (86.90%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MSSTEVST---KGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYL 60
           MSSTEV+T   KGGRG+  +TKSVSRS KAGLQFPVGRIARYLK GRYAQRVGSGSPVYL
Sbjct: 1   MSSTEVATTTKKGGRGKPKTTKSVSRSSKAGLQFPVGRIARYLKAGRYAQRVGSGSPVYL 60

Query: 61  SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKI 120
           SAVLEYLAAEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELSKL+GSVTIASGGV+PKI
Sbjct: 61  SAVLEYLAAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELSKLMGSVTIASGGVLPKI 120

Query: 121 HQSLLPKKAGNAKDKAEIGSASQEF 143
           HQ+LLPKK G  K K EIGSASQEF
Sbjct: 121 HQNLLPKKTG--KGKGEIGSASQEF 143

[Close]

BLAST of MELO3C015882T1 vs. NCBI nr
Match: gi|449435726|ref|XP_004135645.1| (PREDICTED: histone H2AX [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 1.1e-58
Identity = 120/142 (84.51%), Postives = 132/142 (92.96%), Query Frame = 1


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSST  STKGGRG+  +TKSVSRSHKAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKK G  KDK +IGSASQEF
Sbjct: 121 LLPKKVG--KDKGDIGSASQEF 140

The following BLAST results are available for this feature:

BLAST of MELO3C015882T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2AX_PICAB	2.7e-57	81.69	Histone H2AX OS=Picea abies PE=2 SV=1	[more]
H2AX_CICAR	3.5e-57	81.69	Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1	[more]
H2AXB_ORYSI	1.8e-56	83.46	Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1	[more]
H2AXB_ORYSJ	1.8e-56	83.46	Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1	[more]
H2AXA_ARATH	3.0e-56	81.62	Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1	[more]

BLAST of MELO3C015882T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K525_CUCSA	2.5e-70	99.30	Histone H2A OS=Cucumis sativus GN=Csa_7G390240 PE=3 SV=1	[more]
A0A0S3RXP1_PHAAN	3.4e-59	86.90	Histone H2A OS=Vigna angularis var. angularis GN=Vigan.04G292000 PE=3 SV=1	[more]
A0A0L9U7S5_PHAAN	3.4e-59	86.90	Histone H2A OS=Phaseolus angularis GN=LR48_Vigan03g225700 PE=3 SV=1	[more]
V7CZN0_PHAVU	4.5e-59	86.90	Histone H2A OS=Phaseolus vulgaris GN=PHAVU_001G146100g PE=3 SV=1	[more]
A0A0A0LW51_CUCSA	7.6e-59	84.51	Histone H2A OS=Cucumis sativus GN=Csa_1G572950 PE=3 SV=1	[more]

BLAST of MELO3C015882T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08880.1	1.7e-57	81.62	Histone superfamily protein	[more]
AT1G54690.1	2.2e-57	81.62	gamma histone variant H2AX	[more]
AT4G27230.1	1.3e-49	77.34	histone H2A 2	[more]
AT1G51060.1	6.4e-49	77.87	histone H2A 10	[more]
AT3G20670.1	1.1e-48	78.69	histone H2A 13	[more]

BLAST of MELO3C015882T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101083\|ref\|XP_008451416.1\|	1.6e-70	100.00	PREDICTED: histone H2AX-like [Cucumis melo]	[more]
gi\|449462306\|ref\|XP_004148882.1\|	3.6e-70	99.30	PREDICTED: histone H2AX-like [Cucumis sativus]	[more]
gi\|920695650\|gb\|KOM38875.1\|	4.9e-59	86.90	hypothetical protein LR48_Vigan03g225700 [Vigna angularis]	[more]
gi\|593798658\|ref\|XP_007162367.1\|	6.4e-59	86.90	hypothetical protein PHAVU_001G146100g [Phaseolus vulgaris]	[more]
gi\|449435726\|ref\|XP_004135645.1\|	1.1e-58	84.51	PREDICTED: histone H2AX [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002119	Histone_H2A
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C015882	MELO3C015882	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C015882T1	MELO3C015882T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C015882T1.cds1	MELO3C015882T1.cds1	CDS
MELO3C015882T1.cds2	MELO3C015882T1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 77..91 score: 2.0E-49coord: 63..76 score: 2.0E-49coord: 48..63 score: 2.0E-49coord: 19..41 score: 2.0E-49coord: 105..123 score: 2.0
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 8..128 score: 1.2
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 3..94 score: 7.6
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 11..127 score: 4.3
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 22..125 score: 3.29
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 7..142 score: 4.8E