MELO3C015226 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C015226
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTranscription factor jumonji (JmjC) domain protein
Locationchr2 : 7703 .. 8456 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAATGGTTCAGCCGCCTTCAGAAAACACCGAAAAGTGCATCACCGTCAATTATGCAATCATCTGCGCCTACAAACATGCCTCATGTGCCACCACGCACCAGTCCTTCCTCCTCAGACAGTTTCAACCATCCCATCTGTGCAACCCTCTTCTTCATCCGCGCCTATATTGCTCCCCACGCCTCGATTCGTGTTCTGCCACCTAATTTCAACCAGCCACCACCGCTTCTGTTGTCAAATTTGTATGTGTTGCCCTCCTCTAACCTTAGTTATTATCCCGATTTTAAGAATCCTCAAATTCACTCAACATTTGAGGTTGGTGGATCTTTGGCACTTTCCAACCCTAACGTGCAAACTTCCTCTTCGGGAATAACTCAACAACAACTGGAAGAGTTGCGACAACAGATTGCAGCAATTGAGGCTACTTTAGGGACGATATCCAAAACTCCTAGACCGATGTATATTGAGAATCTGGTAACCTCGTTCCCTACTTTATCCTCTTTCTATGTGAGTGAGAATGCTAGTCCAACCACACTTGGAGCTAGTGTCCAGTCAGATATAGCTCAGTCCTTTAGTCTCATTAGTATTGATGGTAAGAGTCCTTGGATCTTGGACTCTGCTGCTACAGACCATTTAACCGGTTCCTCTGAACACCATGTGTCCTACATTTTGTGTGCTGGGAATGAGAAGATAAGAATTTTGATGGCTCCAAGGCTACCATTGCCGGGAAAAGGCAGATTTCTCCTTTTAA

mRNA sequence

ATGGATGAATGGTTCAGCCGCCTTCAGAAAACACCGAAAAGTGCATCACCGTCAATTATGCAATCATCTGCGCCTACAAACATGCCTCATGTGCCACCACGCACCAGTCCTTCCTCCTCAGACAGTTTCAACCATCCCATCTGTGCAACCCTCTTCTTCATCCGCGCCTATATTGCTCCCCACGCCTCGATTCGTGTTCTGCCACCTAATTTCAACCAGCCACCACCGCTTCTGTTGTCAAATTTGTATGTGTTGCCCTCCTCTAACCTTAGTTATTATCCCGATTTTAAGAATCCTCAAATTCACTCAACATTTGAGGTTGGTGGATCTTTGGCACTTTCCAACCCTAACGTGCAAACTTCCTCTTCGGGAATAACTCAACAACAACTGGAAGAGTTGCGACAACAGATTGCAGCAATTGAGGCTACTTTAGGGACGATATCCAAAACTCCTAGACCGATGTATATTGAGAATCTGGTAACCTCGTTCCCTACTTTATCCTCTTTCTATGTGAGTGAGAATGCTAGTCCAACCACACTTGGAGCTAGTGTCCAGTCAGATATAGCTCAGTCCTTTAGTCTCATTAGTATTGATGGCTACCATTGCCGGGAAAAGGCAGATTTCTCCTTTTAA

Coding sequence (CDS)

ATGGATGAATGGTTCAGCCGCCTTCAGAAAACACCGAAAAGTGCATCACCGTCAATTATGCAATCATCTGCGCCTACAAACATGCCTCATGTGCCACCACGCACCAGTCCTTCCTCCTCAGACAGTTTCAACCATCCCATCTGTGCAACCCTCTTCTTCATCCGCGCCTATATTGCTCCCCACGCCTCGATTCGTGTTCTGCCACCTAATTTCAACCAGCCACCACCGCTTCTGTTGTCAAATTTGTATGTGTTGCCCTCCTCTAACCTTAGTTATTATCCCGATTTTAAGAATCCTCAAATTCACTCAACATTTGAGGTTGGTGGATCTTTGGCACTTTCCAACCCTAACGTGCAAACTTCCTCTTCGGGAATAACTCAACAACAACTGGAAGAGTTGCGACAACAGATTGCAGCAATTGAGGCTACTTTAGGGACGATATCCAAAACTCCTAGACCGATGTATATTGAGAATCTGGTAACCTCGTTCCCTACTTTATCCTCTTTCTATGTGAGTGAGAATGCTAGTCCAACCACACTTGGAGCTAGTGTCCAGTCAGATATAGCTCAGTCCTTTAGTCTCATTAGTATTGATGGCTACCATTGCCGGGAAAAGGCAGATTTCTCCTTTTAA

Protein sequence

MDEWFSRLQKTPKSASPSIMQSSAPTNMPHVPPRTSPSSSDSFNHPICATLFFIRAYIAPHASIRVLPPNFNQPPPLLLSNLYVLPSSNLSYYPDFKNPQIHSTFEVGGSLALSNPNVQTSSSGITQQQLEELRQQIAAIEATLGTISKTPRPMYIENLVTSFPTLSSFYVSENASPTTLGASVQSDIAQSFSLISIDGYHCREKADFSF*
Homology
[Close]
BLAST of MELO3C015226 vs. NCBI nr
Match: gi|778688605|ref|XP_004149788.2| (PREDICTED: kirola-like [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 7.9e-13
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 1 

Query: 55  RAYIAPHASIRVLPPNFNQPPPLLLSNLYVLPSSNLSYYPDFKNPQIHSTFEV 108
           +AYIAPH  I VLPPNF QPPPLL SNLY +P  + SY+PD KNPQ HSTFEV
Sbjct: 158 QAYIAPHTRIYVLPPNFGQPPPLLPSNLYAMPPIDPSYHPDVKNPQNHSTFEV 210

The following BLAST results are available for this feature:
BLAST of MELO3C015226 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778688605|ref|XP_004149788.2|7.9e-1371.70PREDICTED: kirola-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006084XPG/Rad2
IPR006086XPG-I_dom
IPR008918HhH2
IPR020045DNA_polI_H3TH
IPR006084XPG/Rad2
IPR006085XPG_DNA_repair_N
IPR006086XPG-I_dom
IPR019974XPG_CS
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003677DNA binding
GO:0003824catalytic activity
GO:0004518nuclease activity
GO:0016788hydrolase activity, acting on ester bonds
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006281DNA repair
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006284 base-excision repair
biological_process GO:0006308 DNA catabolic process
biological_process GO:0043137 DNA replication, removal of RNA primer
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006281 DNA repair
cellular_component GO:0005829 cytosol
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005730 nucleolus
cellular_component GO:0005654 nucleoplasm
molecular_function GO:0008409 5'-3' exonuclease activity
molecular_function GO:0017108 5'-flap endonuclease activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004518 nuclease activity
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015226T1MELO3C015226T1mRNA
MELO3C015226T2MELO3C015226T2mRNA
MELO3C015226T3MELO3C015226T3mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006084XPG/Rad2 endonucleasePRINTSPR00853XPGRADSUPERcoord: 82..101
score: 7.6E-25coord: 146..163
score: 7.6E-25coord: 28..42
score: 7.6
IPR006084XPG/Rad2 endonucleasePANTHERPTHR11081XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILYcoord: 2..169
score: 2.0E
IPR006085XPG N-terminalPFAMPF00752XPG_Ncoord: 1..107
score: 4.7
IPR006085XPG N-terminalSMARTSM00485xpgn3coord: 1..108
score: 3.9
IPR006086XPG-I domainPFAMPF00867XPG_Icoord: 147..176
score: 7.
IPR019974XPG conserved sitePROSITEPS00841XPG_1coord: 80..94
scor
IPR019974XPG conserved sitePROSITEPS00842XPG_2coord: 150..164
scor
NoneNo IPR availablePANTHERPTHR11081:SF30SUBFAMILY NOT NAMEDcoord: 2..169
score: 2.0E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C015226Cucumber (Chinese Long) v3cucmeB059
MELO3C015226Watermelon (97103) v2mewmbB247
MELO3C015226Wax gourdmewgoB296
MELO3C015226Cucumber (Gy14) v1cgymeB031
MELO3C015226Wild cucumber (PI 183967)cpimeB061
MELO3C015226Cucumber (Chinese Long) v2cumeB058
MELO3C015226Watermelon (Charleston Gray)mewcgB242
MELO3C015226Watermelon (97103) v1mewmB265
MELO3C015226Bottle gourd (USVL1VR-Ls)lsimeB409