MELO3C015226T3 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015226T3
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transcription factor jumonji (JmjC) domain protein
Location	chr2 : 17221 .. 18617 (-)
Sequence length	558

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCATCAAGGTATCTGCCAAACTATCTACATCACTTTCCCCTTCCTCGCACTCCACTCTCATTTTCCCCTTTTCTTTAGGGTTTAACCAAGCTTTTAGCTGATAATGCGCCCAAGGGCATGAAGGAGCAGAAGTTCGAAACCTATTTCGGCCGCAAAATCGCTATTGATGCTAGCATGAGTATTTATCAATTTCTTGTCTGTACCACTTTCTCCATTTTCTTTCCTTTTTTTTTTATTTCAGATTAAAAGTTCACCCGGGTATCTCATATTTCTGCATGAACTAATGCAGATTGTTGTGGGTAGAAGTGGGACTGAGATGCTCACCAACGAAGCTGGTGAAGTCACTAGGTACCCCTTTACTTCATTTATATTTCTACTCTCTCTTTGAATTTCATTTTTTAAAATCAACTGAGTATCTGTGGGTGATATTTTCGGTGTCAATTATATCACCTTTTTTCCTTTTATTTTTTCTTTTTATTGTTAAACTGTAGTCATTTGCAAGGGATGTTTAACCGAACAATAAGGCTTCTCGAAGCTGGAATTAAGCCAGTGTAAGTTCTTTCTGCGCCTTGACATTTCAATCTTATGTTTTCTCGTGAAAATTTTGTCTGATATGGTTTTCTTTCATGGGGACAAATGTACTCAGCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAACAAGAACTTGCAAAACGGTAACTGTGTTATCTCATTGTAACTCGTTTATTAAGGGGCAGTCATGATCGTCATGTCTTCCATCTTAAATATGTATGCAGCTATTCAAAGAGAGCAGATGCTACTGAGGACCTAGCAGATGCAATCGAGGTATTTTTGGGTCTTATACTTTGCGTTTTGTTCCTTATAAATCATACAAGACAGTGAAGTATGTCCGGCAACTGCTCCTTTTGTTGTACTAGGTTGGCAACAAGGAGGATATTGAGAAATTCAGTAAAAGGACAGTAAAGGTTAGTTACCTGCTTTAACATTTTCCTCAAGCAACAGACTTATTACATCGTAAATGGATTTAAGTACTCTAACAAACGATCAGTAAAGGGATTGGAGCGGCATGCAAATGTTCTGGAAGTTGTATAATATTATAATATAAACCGTATGCATATTTTATGTGTGGTTAATTTTCAGGTTACAAAGCAGCACAATGATGACTGCAAAAGACTTTTGAGACTCATGGGAGTGCCTGTGATTGAGGTGATAATACTACAGATGTTAGTTCAAGTAATCCATTGCTTCAGTCGTAACATGTTCGAGTACATTGCCATTCTTTTTTGATGTAGCAGGCTCCCTCGGAAGCTGAGGCACAATGTGCTGCACTTTGCAAGTTAGGAAAGGCAAGTGCCCTTCTGCTTGATCATGCTTCTTTTGTCTCTTGA

mRNA sequence

ATGGGCATCAAGGGTTTAACCAAGCTTTTAGCTGATAATGCGCCCAAGGGCATGAAGGAGCAGAAGTTCGAAACCTATTTCGGCCGCAAAATCGCTATTGATGCTAGCATGAGTATTTATCAATTTCTTATTGTTGTGGGTAGAAGTGGGACTGAGATGCTCACCAACGAAGCTGGTGAAGTCACTAGTCATTTGCAAGGGATGTTTAACCGAACAATAAGGCTTCTCGAAGCTGGAATTAAGCCAGTCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAACAAGAACTTGCAAAACGCTATTCAAAGAGAGCAGATGCTACTGAGGACCTAGCAGATGCAATCGAGGTTGGCAACAAGGAGGATATTGAGAAATTCAGTAAAAGGACAGTAAAGGTTACAAAGCAGCACAATGATGACTGCAAAAGACTTTTGAGACTCATGGGAGTGCCTGTGATTGAGGCTCCCTCGGAAGCTGAGGCACAATGTGCTGCACTTTGCAAGTTAGGAAAGGCAAGTGCCCTTCTGCTTGATCATGCTTCTTTTGTCTCTTGA

Coding sequence (CDS)

ATGGGCATCAAGGGTTTAACCAAGCTTTTAGCTGATAATGCGCCCAAGGGCATGAAGGAGCAGAAGTTCGAAACCTATTTCGGCCGCAAAATCGCTATTGATGCTAGCATGAGTATTTATCAATTTCTTATTGTTGTGGGTAGAAGTGGGACTGAGATGCTCACCAACGAAGCTGGTGAAGTCACTAGTCATTTGCAAGGGATGTTTAACCGAACAATAAGGCTTCTCGAAGCTGGAATTAAGCCAGTCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAACAAGAACTTGCAAAACGCTATTCAAAGAGAGCAGATGCTACTGAGGACCTAGCAGATGCAATCGAGGTTGGCAACAAGGAGGATATTGAGAAATTCAGTAAAAGGACAGTAAAGGTTACAAAGCAGCACAATGATGACTGCAAAAGACTTTTGAGACTCATGGGAGTGCCTGTGATTGAGGCTCCCTCGGAAGCTGAGGCACAATGTGCTGCACTTTGCAAGTTAGGAAAGGCAAGTGCCCTTCTGCTTGATCATGCTTCTTTTGTCTCTTGA

Protein sequence

MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKASALLLDHASFVS*

Homology

[Close]

BLAST of MELO3C015226T3 vs. Swiss-Prot
Match: FEN1_SOYBN (Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=2 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 4.3e-87
Identity = 160/172 (93.02%), Postives = 165/172 (95.93%), Query Frame = 1


Query: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKE KFE+YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120
           VTSHLQGMF+RTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRA+ATEDL++A+E  N
Sbjct: 61  VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDLSEALETAN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGK 173
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPV+EAPSEAEAQCAALCK GK
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGK 172

[Close]

BLAST of MELO3C015226T3 vs. Swiss-Prot
Match: FEN1_ARATH (Flap endonuclease 1 OS=Arabidopsis thaliana GN=FEN1 PE=2 SV=2)

HSP 1 Score: 314.7 bits (805), Expect = 6.8e-85
Identity = 157/172 (91.28%), Postives = 162/172 (94.19%), Query Frame = 1


Query: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAP  MKEQKFE+YFGRKIA+DASMSIYQFLIVVGR+GTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPP+LK+QELAKRYSKRADAT DL  AIE GN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGK 173
           KEDIEK+SKRTVKVTKQHNDDCKRLLRLMGVPV+EA SEAEAQCAALCK GK
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGK 172

[Close]

BLAST of MELO3C015226T3 vs. Swiss-Prot
Match: FEN1_MAIZE (Flap endonuclease 1 OS=Zea mays GN=FEN1 PE=2 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 2.7e-81
Identity = 150/176 (85.23%), Postives = 162/176 (92.05%), Query Frame = 1


Query: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKEQKFE+YFGRKIA+DASMSIYQFLIVVGR+G E LTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPD+KKQELAKRYSKR DAT+DL +A+EVG+
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKRYSKRDDATKDLTEAVEVGD 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKASAL 177
           K+ IEK SKRTVKVT+QHN+DCKRLLRLMGVPV+EAPSEAEA+CAALC   K  A+
Sbjct: 121 KDAIEKLSKRTVKVTRQHNEDCKRLLRLMGVPVVEAPSEAEAECAALCINDKVFAV 176

[Close]

BLAST of MELO3C015226T3 vs. Swiss-Prot
Match: FEN11_SORBI (Flap endonuclease 1-A OS=Sorghum bicolor GN=FEN1-A PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 5.9e-81
Identity = 149/176 (84.66%), Postives = 160/176 (90.91%), Query Frame = 1


Query: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKEQKFE+YFGRKIAIDASMSIYQFLIVVGR+G E LTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGMETLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPD+KK+ELAKR+SKR DAT DL +A+E G+
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKEELAKRFSKREDATNDLKEAVEAGD 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKASAL 177
           K+ +EK SKRTVKVT QHNDDCKRLLRLMGVPV+EAPSEAEA+CAALCK  K  A+
Sbjct: 121 KDAVEKLSKRTVKVTAQHNDDCKRLLRLMGVPVVEAPSEAEAECAALCKNDKVFAV 176

[Close]

BLAST of MELO3C015226T3 vs. Swiss-Prot
Match: FEN11_ORYSJ (Flap endonuclease 1-A OS=Oryza sativa subsp. japonica GN=FEN-1a PE=2 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 5.0e-80
Identity = 146/168 (86.90%), Postives = 158/168 (94.05%), Query Frame = 1


Query: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKEQKFE+YFGR+IA+DASMSIYQFLIVVGR+G E LTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKR DAT++L +A+E G+
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGD 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALC 169
           K+ IEKFSKRTVKVTKQHN++CKRLLRLMGVPV+EAP EAEA+CAALC
Sbjct: 121 KDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALC 168

[Close]

BLAST of MELO3C015226T3 vs. TrEMBL
Match: A0A0A0LWA2_CUCSA (Flap endonuclease 1 OS=Cucumis sativus GN=FEN1 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 3.7e-90
Identity = 171/176 (97.16%), Postives = 173/176 (98.30%), Query Frame = 1


Query: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFE YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 41  MGIKGLTKLLADNAPKGMKEQKFEAYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 100

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN
Sbjct: 101 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 160

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKASAL 177
           K+DIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGK  A+
Sbjct: 161 KDDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAV 216

[Close]

BLAST of MELO3C015226T3 vs. TrEMBL
Match: A0A0B2Q1S5_GLYSO (Flap endonuclease 1 OS=Glycine soja GN=FEN1 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 6.6e-87
Identity = 164/178 (92.13%), Postives = 172/178 (96.63%), Query Frame = 1


Query: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKE KFE+YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120
           VTSHLQGMF+RTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRA+ATEDL++A+E  N
Sbjct: 61  VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDLSEALETAN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKASALLL 179
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPV+EAPSEAEAQCAALCK GKAS+ LL
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKASSYLL 178

[Close]

BLAST of MELO3C015226T3 vs. TrEMBL
Match: A0A0R0E8X0_SOYBN (Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 2.1e-85
Identity = 161/176 (91.48%), Postives = 169/176 (96.02%), Query Frame = 1


Query: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKE KFE+YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120
           VTSHLQGMF+RTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRA+ATEDL++A+E  N
Sbjct: 61  VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDLSEALETAN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKASAL 177
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPV+EAPSEAEAQCAALCK GK  A+
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAV 176

[Close]

BLAST of MELO3C015226T3 vs. TrEMBL
Match: A0A0R0EIV6_SOYBN (Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 2.1e-85
Identity = 161/176 (91.48%), Postives = 169/176 (96.02%), Query Frame = 1


Query: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKE KFE+YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120
           VTSHLQGMF+RTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRA+ATEDL++A+E  N
Sbjct: 61  VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDLSEALETAN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKASAL 177
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPV+EAPSEAEAQCAALCK GK  A+
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAV 176

[Close]

BLAST of MELO3C015226T3 vs. TrEMBL
Match: A0A0R0E9G0_SOYBN (Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 2.1e-85
Identity = 161/176 (91.48%), Postives = 169/176 (96.02%), Query Frame = 1


Query: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKE KFE+YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120
           VTSHLQGMF+RTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRA+ATEDL++A+E  N
Sbjct: 61  VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDLSEALETAN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKASAL 177
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPV+EAPSEAEAQCAALCK GK  A+
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAV 176

[Close]

BLAST of MELO3C015226T3 vs. TAIR10
Match: AT5G26680.1 (AT5G26680.1 5'-3' exonuclease family protein)

HSP 1 Score: 314.7 bits (805), Expect = 3.8e-86
Identity = 157/172 (91.28%), Postives = 162/172 (94.19%), Query Frame = 1


Query: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAP  MKEQKFE+YFGRKIA+DASMSIYQFLIVVGR+GTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPP+LK+QELAKRYSKRADAT DL  AIE GN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGK 173
           KEDIEK+SKRTVKVTKQHNDDCKRLLRLMGVPV+EA SEAEAQCAALCK GK
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGK 172

[Close]

BLAST of MELO3C015226T3 vs. TAIR10
Match: AT1G01880.1 (AT1G01880.1 5'-3' exonuclease family protein)

HSP 1 Score: 58.9 bits (141), Expect = 3.8e-09
Identity = 47/160 (29.38%), Postives = 68/160 (42.50%), Query Frame = 1


Query: 19  KEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEA 78
           ++Q F+    +++A+D S  I Q    V          +   +  HL+  F RTI L   
Sbjct: 16  QQQGFDFLRNKRVAVDLSFWIVQHETAV----------KGFVLKPHLRLTFFRTINLFSK 75

Query: 79  -GIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQ 138
            G  PV+V DG P  LK Q    R+ + +         I+ G   +  K     V+    
Sbjct: 76  FGAYPVFVVDGTPSPLKSQARISRFFRSSGIDTCNLPVIKDGVSVERNKLFSEWVR---- 135

Query: 139 HNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKASALL 178
              +C  LL L+G+PV++A  EAEA CA L   G   A +
Sbjct: 136 ---ECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACI 158

[Close]

BLAST of MELO3C015226T3 vs. NCBI nr
Match: gi|659099217|ref|XP_008450492.1| (PREDICTED: flap endonuclease 1 isoform X2 [Cucumis melo])

HSP 1 Score: 342.0 bits (876), Expect = 6.3e-91
Identity = 173/176 (98.30%), Postives = 174/176 (98.86%), Query Frame = 1


Query: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKASAL 177
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGK  A+
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAV 176

[Close]

BLAST of MELO3C015226T3 vs. NCBI nr
Match: gi|778662222|ref|XP_011659562.1| (PREDICTED: flap endonuclease 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 339.0 bits (868), Expect = 5.4e-90
Identity = 171/176 (97.16%), Postives = 173/176 (98.30%), Query Frame = 1


Query: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFE YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKGMKEQKFEAYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKASAL 177
           K+DIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGK  A+
Sbjct: 121 KDDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAV 176

[Close]

BLAST of MELO3C015226T3 vs. NCBI nr
Match: gi|700210912|gb|KGN66008.1| (hypothetical protein Csa_1G561390 [Cucumis sativus])

HSP 1 Score: 339.0 bits (868), Expect = 5.4e-90
Identity = 171/176 (97.16%), Postives = 173/176 (98.30%), Query Frame = 1


Query: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFE YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 41  MGIKGLTKLLADNAPKGMKEQKFEAYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 100

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN
Sbjct: 101 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 160

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKASAL 177
           K+DIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGK  A+
Sbjct: 161 KDDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAV 216

[Close]

BLAST of MELO3C015226T3 vs. NCBI nr
Match: gi|659099221|ref|XP_008450493.1| (PREDICTED: flap endonuclease 1 isoform X3 [Cucumis melo])

HSP 1 Score: 337.4 bits (864), Expect = 1.6e-89
Identity = 173/177 (97.74%), Postives = 174/177 (98.31%), Query Frame = 1


Query: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE-APSEAEAQCAALCKLGKASAL 177
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE APSEAEAQCAALCKLGK  A+
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEQAPSEAEAQCAALCKLGKVYAV 177

[Close]

BLAST of MELO3C015226T3 vs. NCBI nr
Match: gi|659099215|ref|XP_008450491.1| (PREDICTED: flap endonuclease 1 isoform X1 [Cucumis melo])

HSP 1 Score: 337.4 bits (864), Expect = 1.6e-89
Identity = 173/177 (97.74%), Postives = 174/177 (98.31%), Query Frame = 1


Query: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE-APSEAEAQCAALCKLGKASAL 177
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE APSEAEAQCAALCKLGK  A+
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEQAPSEAEAQCAALCKLGKVYAV 177

The following BLAST results are available for this feature:

BLAST of MELO3C015226T3 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FEN1_SOYBN	4.3e-87	93.02	Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=2 SV=1	[more]
FEN1_ARATH	6.8e-85	91.28	Flap endonuclease 1 OS=Arabidopsis thaliana GN=FEN1 PE=2 SV=2	[more]
FEN1_MAIZE	2.7e-81	85.23	Flap endonuclease 1 OS=Zea mays GN=FEN1 PE=2 SV=1	[more]
FEN11_SORBI	5.9e-81	84.66	Flap endonuclease 1-A OS=Sorghum bicolor GN=FEN1-A PE=3 SV=1	[more]
FEN11_ORYSJ	5.0e-80	86.90	Flap endonuclease 1-A OS=Oryza sativa subsp. japonica GN=FEN-1a PE=2 SV=1	[more]

BLAST of MELO3C015226T3 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWA2_CUCSA	3.7e-90	97.16	Flap endonuclease 1 OS=Cucumis sativus GN=FEN1 PE=3 SV=1	[more]
A0A0B2Q1S5_GLYSO	6.6e-87	92.13	Flap endonuclease 1 OS=Glycine soja GN=FEN1 PE=3 SV=1	[more]
A0A0R0E8X0_SOYBN	2.1e-85	91.48	Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=3 SV=1	[more]
A0A0R0EIV6_SOYBN	2.1e-85	91.48	Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=3 SV=1	[more]
A0A0R0E9G0_SOYBN	2.1e-85	91.48	Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=3 SV=1	[more]

BLAST of MELO3C015226T3 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26680.1	3.8e-86	91.28	5'-3' exonuclease family protein	[more]
AT1G01880.1	3.8e-09	29.38	5'-3' exonuclease family protein	[more]

BLAST of MELO3C015226T3 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099217\|ref\|XP_008450492.1\|	6.3e-91	98.30	PREDICTED: flap endonuclease 1 isoform X2 [Cucumis melo]	[more]
gi\|778662222\|ref\|XP_011659562.1\|	5.4e-90	97.16	PREDICTED: flap endonuclease 1 isoform X2 [Cucumis sativus]	[more]
gi\|700210912\|gb\|KGN66008.1\|	5.4e-90	97.16	hypothetical protein Csa_1G561390 [Cucumis sativus]	[more]
gi\|659099221\|ref\|XP_008450493.1\|	1.6e-89	97.74	PREDICTED: flap endonuclease 1 isoform X3 [Cucumis melo]	[more]
gi\|659099215\|ref\|XP_008450491.1\|	1.6e-89	97.74	PREDICTED: flap endonuclease 1 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR006084	XPG/Rad2
IPR006085	XPG_DNA_repair_N
IPR006086	XPG-I_dom
IPR019974	XPG_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0004518	nuclease activity
GO:0016788	hydrolase activity, acting on ester bonds

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0006284	base-excision repair
biological_process	GO:0006308	DNA catabolic process
biological_process	GO:0043137	DNA replication, removal of RNA primer
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0016788	hydrolase activity, acting on ester bonds
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0008409	5'-3' exonuclease activity
molecular_function	GO:0017108	5'-flap endonuclease activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000287	magnesium ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C015226	MELO3C015226	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C015226T3	MELO3C015226T3-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C015226T3.cds9	MELO3C015226T3.cds9	CDS
MELO3C015226T3.cds8	MELO3C015226T3.cds8	CDS
MELO3C015226T3.cds7	MELO3C015226T3.cds7	CDS
MELO3C015226T3.cds6	MELO3C015226T3.cds6	CDS
MELO3C015226T3.cds5	MELO3C015226T3.cds5	CDS
MELO3C015226T3.cds4	MELO3C015226T3.cds4	CDS
MELO3C015226T3.cds3	MELO3C015226T3.cds3	CDS
MELO3C015226T3.cds2	MELO3C015226T3.cds2	CDS
MELO3C015226T3.cds1	MELO3C015226T3.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006084	XPG/Rad2 endonuclease	PRINTS	PR00853	XPGRADSUPER	coord: 82..101 score: 7.6E-25coord: 146..163 score: 7.6E-25coord: 28..42 score: 7.6
IPR006084	XPG/Rad2 endonuclease	PANTHER	PTHR11081	XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY	coord: 2..169 score: 2.0E
IPR006085	XPG N-terminal	PFAM	PF00752	XPG_N	coord: 1..107 score: 4.7
IPR006085	XPG N-terminal	SMART	SM00485	xpgn3	coord: 1..108 score: 3.9
IPR006086	XPG-I domain	PFAM	PF00867	XPG_I	coord: 147..176 score: 7.
IPR019974	XPG conserved site	PROSITE	PS00841	XPG_1	coord: 80..94 scor
IPR019974	XPG conserved site	PROSITE	PS00842	XPG_2	coord: 150..164 scor
None	No IPR available	PANTHER	PTHR11081:SF30	SUBFAMILY NOT NAMED	coord: 2..169 score: 2.0E