MELO3C015226T2 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C015226T2
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTranscription factor jumonji (JmjC) domain protein
Locationchr2 : 12342 .. 13044 (-)
Sequence length306
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGCTTCTATTGTTATTTCCATCGCCGTGTTCATTTTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTTCTCTTCTTTTTTCCTTTTTTTTTGTTTCTTTACTTCTCTCCTTGTGAATCCTTTATATAGATTGAGTATTAGTCTATTTTCATTTTATCAATGAAAAACTTTGACTCTTGTTAAAGGAAAAGGGTGTTTCTCAAAATTCATATCTTTCAGGTTTATGCCGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCCAGATTTCTTCGTCACTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTGGCAAAGGTGATTTGTCTCCATCTCAATCTGGCTATTTACTTTTGTTATCATTCACCAAATAATTTGTTTCATTTTAGATTTTGGAAGAGCTGAACCTCACCATGGATCAATTTATCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAATATCCGAGGTATTGGGATTCTACATGCATTTTATTGTCCTACTGTTATTGGTATTTTACTTTTGTTGTGCTTGTGCCGTTCTTGTTTTATAGTTCTGAATGTAGAGCCCTTATGCTTTACTGCACAGGTATAGGGGGGCTGACTGCTCTAAAGCTTATACGTCAACATGGGGCTATAGAGGGTATATTAGAGAACATAAATAAAGAGAGGTGA

mRNA sequence

ATGTCGGCTTCTATTGTTTATGCCGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCCAGATTTCTTCGTCACTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTGGCAAAGATTTTGGAAGAGCTGAACCTCACCATGGATCAATTTATCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAATATCCGAGGTATAGGGGGGCTGACTGCTCTAAAGCTTATACGTCAACATGGGGCTATAGAGGGTATATTAGAGAACATAAATAAAGAGAGGTGA

Coding sequence (CDS)

ATGTCGGCTTCTATTGTTTATGCCGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCCAGATTTCTTCGTCACTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTGGCAAAGATTTTGGAAGAGCTGAACCTCACCATGGATCAATTTATCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAATATCCGAGGTATAGGGGGGCTGACTGCTCTAAAGCTTATACGTCAACATGGGGCTATAGAGGGTATATTAGAGAACATAAATAAAGAGAGGTGA

Protein sequence

MSASIVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER*
Homology
[Close]
BLAST of MELO3C015226T2 vs. Swiss-Prot
Match: FEN11_ORYSI (Flap endonuclease 1-A OS=Oryza sativa subsp. indica GN=FEN1a PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-44
Identity = 86/97 (88.66%), Postives = 92/97 (94.85%), Query Frame = 1 

Query: 5   IVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILS 64
           +VYAVASEDMDSLTFG+PRFLRHLMDPSS+KIPVMEFEVAK+LEEL LTMDQFIDLCILS
Sbjct: 172 MVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILS 231

Query: 65  GCDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER 102
           GCDYCD+I+GIGG TALKLIRQHG+IE ILENINK+R
Sbjct: 232 GCDYCDSIKGIGGQTALKLIRQHGSIESILENINKDR 268

[Close]
BLAST of MELO3C015226T2 vs. Swiss-Prot
Match: FEN11_ORYSJ (Flap endonuclease 1-A OS=Oryza sativa subsp. japonica GN=FEN-1a PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-44
Identity = 86/97 (88.66%), Postives = 92/97 (94.85%), Query Frame = 1 

Query: 5   IVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILS 64
           +VYAVASEDMDSLTFG+PRFLRHLMDPSS+KIPVMEFEVAK+LEEL LTMDQFIDLCILS
Sbjct: 172 MVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILS 231

Query: 65  GCDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER 102
           GCDYCD+I+GIGG TALKLIRQHG+IE ILENINK+R
Sbjct: 232 GCDYCDSIKGIGGQTALKLIRQHGSIESILENINKDR 268

[Close]
BLAST of MELO3C015226T2 vs. Swiss-Prot
Match: FEN1_ARATH (Flap endonuclease 1 OS=Arabidopsis thaliana GN=FEN1 PE=2 SV=2)

HSP 1 Score: 179.1 bits (453), Expect = 2.4e-44
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 1 

Query: 6   VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 65
           VY VASEDMDSLTFG+P+FLRHLMDPSSRKIPVMEFEVAKILEEL LTMDQFIDLCILSG
Sbjct: 173 VYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSG 232

Query: 66  CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER 102
           CDYCD+IRGIGG TALKLIRQHG+IE ILEN+NKER
Sbjct: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENLNKER 268

[Close]
BLAST of MELO3C015226T2 vs. Swiss-Prot
Match: FEN1_SOYBN (Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.2e-44
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 1 

Query: 3   ASIVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCI 62
           A  VY V SEDMDSLTFG+P+FLRHLMDPSS+KIPVMEFEVAKILEELN+TMDQFIDLCI
Sbjct: 170 AGKVYGVVSEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFEVAKILEELNMTMDQFIDLCI 229

Query: 63  LSGCDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER 102
           LSGCDYCD+IRGIGGLTALKLIRQHG+IE I EN+NKER
Sbjct: 230 LSGCDYCDSIRGIGGLTALKLIRQHGSIENIPENLNKER 268

[Close]
BLAST of MELO3C015226T2 vs. Swiss-Prot
Match: FEN1_MAIZE (Flap endonuclease 1 OS=Zea mays GN=FEN1 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 7.9e-43
Identity = 82/96 (85.42%), Postives = 90/96 (93.75%), Query Frame = 1 

Query: 6   VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 65
           V+AVASEDMDSLTFG+PRFLRHLMDPSS+KIPVMEF+VAK+LEEL LTMDQFIDLCIL G
Sbjct: 173 VFAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFDVAKVLEELELTMDQFIDLCILCG 232

Query: 66  CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER 102
           CDYCD+I+GIGG TALKLIRQHG+IE ILEN+NK+R
Sbjct: 233 CDYCDSIKGIGGQTALKLIRQHGSIESILENLNKDR 268

[Close]
BLAST of MELO3C015226T2 vs. TrEMBL
Match: A0A0A0LWA2_CUCSA (Flap endonuclease 1 OS=Cucumis sativus GN=FEN1 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 6.9e-46
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 1 

Query: 6   VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 65
           VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG
Sbjct: 213 VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 272

Query: 66  CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER 102
           CDYCDNIRGIGGLTALKLIRQHG+IE ILENINKER
Sbjct: 273 CDYCDNIRGIGGLTALKLIRQHGSIESILENINKER 308

[Close]
BLAST of MELO3C015226T2 vs. TrEMBL
Match: I3SAA1_LOTJA (Flap endonuclease 1 OS=Lotus japonicus GN=FEN1 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.3e-44
Identity = 90/99 (90.91%), Postives = 96/99 (96.97%), Query Frame = 1 

Query: 3   ASIVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCI 62
           A +VYAVASEDMDSLTFG+P+FLRHLMDPSS+K+PVMEFEVAKILEELNLTMDQFIDLCI
Sbjct: 154 AGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAKILEELNLTMDQFIDLCI 213

Query: 63  LSGCDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER 102
           LSGCDYCDNIRGIGG TALKLIRQHG+IE ILENINKER
Sbjct: 214 LSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKER 252

[Close]
BLAST of MELO3C015226T2 vs. TrEMBL
Match: A0A0R0EIV6_SOYBN (Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.9e-44
Identity = 90/99 (90.91%), Postives = 96/99 (96.97%), Query Frame = 1 

Query: 3   ASIVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCI 62
           A  VYAVASEDMDSLTFGSP+FLRHLMDPSS+KIPVMEFEVAKILEELN+TMDQFIDLCI
Sbjct: 170 AGKVYAVASEDMDSLTFGSPKFLRHLMDPSSKKIPVMEFEVAKILEELNMTMDQFIDLCI 229

Query: 63  LSGCDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER 102
           LSGCDYCD+IRGIGGLTALKLIRQHG+IE ILEN+NKER
Sbjct: 230 LSGCDYCDSIRGIGGLTALKLIRQHGSIENILENLNKER 268

[Close]
BLAST of MELO3C015226T2 vs. TrEMBL
Match: A0A0B2R2V7_GLYSO (Flap endonuclease 1 OS=Glycine soja GN=FEN1 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.9e-44
Identity = 90/99 (90.91%), Postives = 96/99 (96.97%), Query Frame = 1 

Query: 3   ASIVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCI 62
           A  VYAVASEDMDSLTFGSP+FLRHLMDPSS+KIPVMEFEVAKILEELN+TMDQFIDLCI
Sbjct: 170 AGKVYAVASEDMDSLTFGSPKFLRHLMDPSSKKIPVMEFEVAKILEELNMTMDQFIDLCI 229

Query: 63  LSGCDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER 102
           LSGCDYCD+IRGIGGLTALKLIRQHG+IE ILEN+NKER
Sbjct: 230 LSGCDYCDSIRGIGGLTALKLIRQHGSIENILENLNKER 268

[Close]
BLAST of MELO3C015226T2 vs. TrEMBL
Match: I1NES9_SOYBN (Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=3 SV=2)

HSP 1 Score: 185.7 bits (470), Expect = 2.9e-44
Identity = 90/99 (90.91%), Postives = 96/99 (96.97%), Query Frame = 1 

Query: 3   ASIVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCI 62
           A  VYAVASEDMDSLTFGSP+FLRHLMDPSS+KIPVMEFEVAKILEELN+TMDQFIDLCI
Sbjct: 215 AGKVYAVASEDMDSLTFGSPKFLRHLMDPSSKKIPVMEFEVAKILEELNMTMDQFIDLCI 274

Query: 63  LSGCDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER 102
           LSGCDYCD+IRGIGGLTALKLIRQHG+IE ILEN+NKER
Sbjct: 275 LSGCDYCDSIRGIGGLTALKLIRQHGSIENILENLNKER 313

[Close]
BLAST of MELO3C015226T2 vs. TAIR10
Match: AT5G26680.1 (AT5G26680.1 5'-3' exonuclease family protein)

HSP 1 Score: 179.1 bits (453), Expect = 1.4e-45
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 1 

Query: 6   VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 65
           VY VASEDMDSLTFG+P+FLRHLMDPSSRKIPVMEFEVAKILEEL LTMDQFIDLCILSG
Sbjct: 173 VYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSG 232

Query: 66  CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER 102
           CDYCD+IRGIGG TALKLIRQHG+IE ILEN+NKER
Sbjct: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENLNKER 268

[Close]
BLAST of MELO3C015226T2 vs. NCBI nr
Match: gi|659099221|ref|XP_008450493.1| (PREDICTED: flap endonuclease 1 isoform X3 [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 9.0e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 6   VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 65
           VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG
Sbjct: 174 VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 233

Query: 66  CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER 102
           CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER
Sbjct: 234 CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER 269

[Close]
BLAST of MELO3C015226T2 vs. NCBI nr
Match: gi|659099223|ref|XP_008450494.1| (PREDICTED: flap endonuclease 1 isoform X4 [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 9.0e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 6   VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 65
           VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG
Sbjct: 174 VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 233

Query: 66  CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER 102
           CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER
Sbjct: 234 CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER 269

[Close]
BLAST of MELO3C015226T2 vs. NCBI nr
Match: gi|659099217|ref|XP_008450492.1| (PREDICTED: flap endonuclease 1 isoform X2 [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 9.0e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 6   VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 65
           VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG
Sbjct: 173 VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 232

Query: 66  CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER 102
           CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER
Sbjct: 233 CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER 268

[Close]
BLAST of MELO3C015226T2 vs. NCBI nr
Match: gi|659099215|ref|XP_008450491.1| (PREDICTED: flap endonuclease 1 isoform X1 [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 9.0e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 6   VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 65
           VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG
Sbjct: 174 VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 233

Query: 66  CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER 102
           CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER
Sbjct: 234 CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER 269

[Close]
BLAST of MELO3C015226T2 vs. NCBI nr
Match: gi|778662225|ref|XP_011659566.1| (PREDICTED: flap endonuclease 1 isoform X3 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 9.9e-46
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 1 

Query: 6   VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 65
           VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG
Sbjct: 174 VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 233

Query: 66  CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKER 102
           CDYCDNIRGIGGLTALKLIRQHG+IE ILENINKER
Sbjct: 234 CDYCDNIRGIGGLTALKLIRQHGSIESILENINKER 269

The following BLAST results are available for this feature:
BLAST of MELO3C015226T2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FEN11_ORYSI1.4e-4488.66Flap endonuclease 1-A OS=Oryza sativa subsp. indica GN=FEN1a PE=3 SV=1[more]
FEN11_ORYSJ1.4e-4488.66Flap endonuclease 1-A OS=Oryza sativa subsp. japonica GN=FEN-1a PE=2 SV=1[more]
FEN1_ARATH2.4e-4490.63Flap endonuclease 1 OS=Arabidopsis thaliana GN=FEN1 PE=2 SV=2[more]
FEN1_SOYBN3.2e-4486.87Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=2 SV=1[more]
FEN1_MAIZE7.9e-4385.42Flap endonuclease 1 OS=Zea mays GN=FEN1 PE=2 SV=1[more]
BLAST of MELO3C015226T2 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWA2_CUCSA6.9e-4697.92Flap endonuclease 1 OS=Cucumis sativus GN=FEN1 PE=3 SV=1[more]
I3SAA1_LOTJA1.3e-4490.91Flap endonuclease 1 OS=Lotus japonicus GN=FEN1 PE=2 SV=1[more]
A0A0R0EIV6_SOYBN2.9e-4490.91Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=3 SV=1[more]
A0A0B2R2V7_GLYSO2.9e-4490.91Flap endonuclease 1 OS=Glycine soja GN=FEN1 PE=3 SV=1[more]
I1NES9_SOYBN2.9e-4490.91Flap endonuclease 1 OS=Glycine max GN=FEN1 PE=3 SV=2[more]
BLAST of MELO3C015226T2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G26680.11.4e-4590.63 5'-3' exonuclease family protein[more]
BLAST of MELO3C015226T2 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659099221|ref|XP_008450493.1|9.0e-47100.00PREDICTED: flap endonuclease 1 isoform X3 [Cucumis melo][more]
gi|659099223|ref|XP_008450494.1|9.0e-47100.00PREDICTED: flap endonuclease 1 isoform X4 [Cucumis melo][more]
gi|659099217|ref|XP_008450492.1|9.0e-47100.00PREDICTED: flap endonuclease 1 isoform X2 [Cucumis melo][more]
gi|659099215|ref|XP_008450491.1|9.0e-47100.00PREDICTED: flap endonuclease 1 isoform X1 [Cucumis melo][more]
gi|778662225|ref|XP_011659566.1|9.9e-4697.92PREDICTED: flap endonuclease 1 isoform X3 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006084XPG/Rad2
IPR006086XPG-I_dom
IPR008918HhH2
IPR020045DNA_polI_H3TH
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003677DNA binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0006284 base-excision repair
biological_process GO:0006308 DNA catabolic process
biological_process GO:0043137 DNA replication, removal of RNA primer
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
cellular_component GO:0005829 cytosol
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005730 nucleolus
cellular_component GO:0005654 nucleoplasm
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0004518 nuclease activity
molecular_function GO:0008409 5'-3' exonuclease activity
molecular_function GO:0017108 5'-flap endonuclease activity
molecular_function GO:0000287 magnesium ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C015226MELO3C015226gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C015226T2MELO3C015226T2-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C015226T2.cds4MELO3C015226T2.cds4CDS
MELO3C015226T2.cds3MELO3C015226T2.cds3CDS
MELO3C015226T2.cds2MELO3C015226T2.cds2CDS
MELO3C015226T2.cds1MELO3C015226T2.cds1CDS


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006084XPG/Rad2 endonucleasePANTHERPTHR11081XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILYcoord: 6..97
score: 1.9
IPR006086XPG-I domainPFAMPF00867XPG_Icoord: 4..67
score: 2.1
IPR006086XPG-I domainSMARTSM00484xpgineucoord: 3..52
score: 1.
IPR008918Helix-hairpin-helix motif, class 2SMARTSM00279HhH_4coord: 54..87
score: 3.2
IPR0200455'-3' exonuclease, C-terminal domainunknownSSF478075' to 3' exonuclease, C-terminal subdomaincoord: 52..99
score: 2.24
NoneNo IPR availableGENE3DG3DSA:1.10.150.20coord: 50..99
score: 2.4
NoneNo IPR availablePANTHERPTHR11081:SF30SUBFAMILY NOT NAMEDcoord: 6..97
score: 1.9