MELO3C015226T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015226T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transcription factor jumonji (JmjC) domain protein
Location	chr2 : 7703 .. 8456 (+)
Sequence length	633

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAATGGTTCAGCCGCCTTCAGAAAACACCGAAAAGTGCATCACCGTCAATTATGCAATCATCTGCGCCTACAAACATGCCTCATGTGCCACCACGCACCAGTCCTTCCTCCTCAGACAGTTTCAACCATCCCATCTGTGCAACCCTCTTCTTCATCCGCGCCTATATTGCTCCCCACGCCTCGATTCGTGTTCTGCCACCTAATTTCAACCAGCCACCACCGCTTCTGTTGTCAAATTTGTATGTGTTGCCCTCCTCTAACCTTAGTTATTATCCCGATTTTAAGAATCCTCAAATTCACTCAACATTTGAGGTTGGTGGATCTTTGGCACTTTCCAACCCTAACGTGCAAACTTCCTCTTCGGGAATAACTCAACAACAACTGGAAGAGTTGCGACAACAGATTGCAGCAATTGAGGCTACTTTAGGGACGATATCCAAAACTCCTAGACCGATGTATATTGAGAATCTGGTAACCTCGTTCCCTACTTTATCCTCTTTCTATGTGAGTGAGAATGCTAGTCCAACCACACTTGGAGCTAGTGTCCAGTCAGATATAGCTCAGTCCTTTAGTCTCATTAGTATTGATGGTAAGAGTCCTTGGATCTTGGACTCTGCTGCTACAGACCATTTAACCGGTTCCTCTGAACACCATGTGTCCTACATTTTGTGTGCTGGGAATGAGAAGATAAGAATTTTGATGGCTCCAAGGCTACCATTGCCGGGAAAAGGCAGATTTCTCCTTTTAA

mRNA sequence

ATGGATGAATGGTTCAGCCGCCTTCAGAAAACACCGAAAAGTGCATCACCGTCAATTATGCAATCATCTGCGCCTACAAACATGCCTCATGTGCCACCACGCACCAGTCCTTCCTCCTCAGACAGTTTCAACCATCCCATCTGTGCAACCCTCTTCTTCATCCGCGCCTATATTGCTCCCCACGCCTCGATTCGTGTTCTGCCACCTAATTTCAACCAGCCACCACCGCTTCTGTTGTCAAATTTGTATGTGTTGCCCTCCTCTAACCTTAGTTATTATCCCGATTTTAAGAATCCTCAAATTCACTCAACATTTGAGGTTGGTGGATCTTTGGCACTTTCCAACCCTAACGTGCAAACTTCCTCTTCGGGAATAACTCAACAACAACTGGAAGAGTTGCGACAACAGATTGCAGCAATTGAGGCTACTTTAGGGACGATATCCAAAACTCCTAGACCGATGTATATTGAGAATCTGGTAACCTCGTTCCCTACTTTATCCTCTTTCTATGTGAGTGAGAATGCTAGTCCAACCACACTTGGAGCTAGTGTCCAGTCAGATATAGCTCAGTCCTTTAGTCTCATTAGTATTGATGGCTACCATTGCCGGGAAAAGGCAGATTTCTCCTTTTAA

Coding sequence (CDS)

ATGGATGAATGGTTCAGCCGCCTTCAGAAAACACCGAAAAGTGCATCACCGTCAATTATGCAATCATCTGCGCCTACAAACATGCCTCATGTGCCACCACGCACCAGTCCTTCCTCCTCAGACAGTTTCAACCATCCCATCTGTGCAACCCTCTTCTTCATCCGCGCCTATATTGCTCCCCACGCCTCGATTCGTGTTCTGCCACCTAATTTCAACCAGCCACCACCGCTTCTGTTGTCAAATTTGTATGTGTTGCCCTCCTCTAACCTTAGTTATTATCCCGATTTTAAGAATCCTCAAATTCACTCAACATTTGAGGTTGGTGGATCTTTGGCACTTTCCAACCCTAACGTGCAAACTTCCTCTTCGGGAATAACTCAACAACAACTGGAAGAGTTGCGACAACAGATTGCAGCAATTGAGGCTACTTTAGGGACGATATCCAAAACTCCTAGACCGATGTATATTGAGAATCTGGTAACCTCGTTCCCTACTTTATCCTCTTTCTATGTGAGTGAGAATGCTAGTCCAACCACACTTGGAGCTAGTGTCCAGTCAGATATAGCTCAGTCCTTTAGTCTCATTAGTATTGATGGCTACCATTGCCGGGAAAAGGCAGATTTCTCCTTTTAA

Protein sequence

MDEWFSRLQKTPKSASPSIMQSSAPTNMPHVPPRTSPSSSDSFNHPICATLFFIRAYIAPHASIRVLPPNFNQPPPLLLSNLYVLPSSNLSYYPDFKNPQIHSTFEVGGSLALSNPNVQTSSSGITQQQLEELRQQIAAIEATLGTISKTPRPMYIENLVTSFPTLSSFYVSENASPTTLGASVQSDIAQSFSLISIDGYHCREKADFSF*

Homology

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BLAST of MELO3C015226T1 vs. NCBI nr
Match: gi|778688605|ref|XP_004149788.2| (PREDICTED: kirola-like [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 7.9e-13
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 55  RAYIAPHASIRVLPPNFNQPPPLLLSNLYVLPSSNLSYYPDFKNPQIHSTFEV 108
           +AYIAPH  I VLPPNF QPPPLL SNLY +P  + SY+PD KNPQ HSTFEV
Sbjct: 158 QAYIAPHTRIYVLPPNFGQPPPLLPSNLYAMPPIDPSYHPDVKNPQNHSTFEV 210

The following BLAST results are available for this feature:

BLAST of MELO3C015226T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688605\|ref\|XP_004149788.2\|	7.9e-13	71.70	PREDICTED: kirola-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006284	base-excision repair
biological_process	GO:0006308	DNA catabolic process
biological_process	GO:0043137	DNA replication, removal of RNA primer
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0008409	5'-3' exonuclease activity
molecular_function	GO:0017108	5'-flap endonuclease activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000287	magnesium ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C015226	MELO3C015226	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C015226T1	MELO3C015226T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C015226T1.cds1	MELO3C015226T1.cds1	CDS
MELO3C015226T1.cds2	MELO3C015226T1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 123..150 scor