MELO3C014796.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C014796.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	translocon-associated protein subunit beta
Location	chr06 : 23756757 .. 23759527 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACTGTTCCACATTTTTGCGTACCTAATTCATCCGACGCCTCCTTCTCCAAACTCCCATTCCGATCATCTCTCTCGCCCTAATTCCGACGATTTCATGGCCCATCCCTTTCTACCTCCTCTGATCCGTCTCCTTTTCGCTTTTCTCTTCCTCTCCTCGACCATCGCAACCTCCGATGTTCCATTCATTGTCGCCCACAAGAAGGCTTCCCTCACTCGCCTCAAATCCGGCGCCGAACGCGTCTCTGTCTCAATCGACATTTACAATCAGGGATCTTCGTATGTTCTCTTCCATTCCTTTAATCTGATCTCTCTTTTCTTTTCTAGATTCAGCTTGACTTACTACTCCCTGGTCTCTCACTTGTAGATCGAATCGTTCTTTCTGCATGTCTGTTTTCATTCATTATGTTTTGTTCTGGATCTAAAATTTGATTTGTTCGTACGCTTTCTGGTAAATAAATTTTAGGCTCCGGCGTCGAAAATGTTCTCAATTATAGAAGAATAGACATTTTCATCGATGTGAAATTTGGTGCATTTGTCTTTTATGAATTGTGGGAAAAGTTCGTAATGTCTTTGGTTAGATCCTCAAGGCTATTACGAACTGGAACCAGGCGATGCTCTCCTAGCTGCATCAATAAATTCTGTATTTTTTTTTTTGTTTAAAAAAAAAAATGTAAACTCTCCAAAATGATTTACCGAGTCGTTTTATTTTGATGATTGCCGCATTGGCTGTCTTAATAGTCGATCGGCCATGATATCCATTGTCATTCCAGAAGCTGTTGTGCCTAGATCTTGTTTCACACTAAAATTTTGTTCATTACGTCTGCTATAGTGGCCACGCAACAGGAAGATATATTTGAGCGAATTTTTGTTAAAAATTACCATTTGGTGTACACTGATGGTTGGAGAGTTGTGTGTGTGTATGTGAAAAGTGCTAACTGAAATTTAGAAATTTCTAAACCAAAGTAGATCATGTATCTATTTGATCTATGTGAATCAAATACTGAGAAGCTTGGAAGAGGATTCATGACGCATGAGATGTTCTTTTGACTTGTTCGCTTGCTTCTTTTTAAGATAATTAGGAGGGTTTATTAGGAAATTTGGAAGGGAGGAGTTGTCTGACTTATACATTTTTTTCTTTTCTTTTCTTTTCTTTTATTGATCAGATTTACTATTCCCTATCCTGTTACTTTCTTTGTCCTTTGTTTTGTACTGTCCAGGAAACAGATCACCTTTGATTTGTACTATCCTGGTATCTCATTATGTTTTATCTTTTCAACTTTATAAATTATATATCTCTTATTTCTTCATATTTTTCGTTGCTTAGAATTTCTGTAGTTTCTTTATCTTATGTTATCTTTGACTAAAGAAGGGAATCCTTTTCATTTTCCTCCCTTAACCCTGTTACTTTTTGTGTTTTTATTTCTAAATAGCCTGGGTTCTAATTTTTCTCCTCTTTTTTGTATTTTCACTTATAATGATTACAGGACCGCATATGATGTAAGTCTGAATGATGCAAGCTGGCCAGGAGATATGTTTGATATTGTGAGTGGTGAGACCTCCAACTCGTGGGAAAGACTTGATGCGTAAGTGATAGCTTTTTGTATTATATTCTTTTCTATATGTCATGGTACCCTCCATTGGGTTTTTGCGCTTATAACACGAATCTGCTGTTTGACAGTGGTGGCCATGTATCTCATTCATTTGAATTGGAAGCAAAATCGAAAGGAATGTTTCATGGTTCACCTGCTGTTGTCACATTCCGTGTCCCTACAAAGTCTGCTTTACAGGTCAAATGCAAATATCCTTTCAATTACAAATATATTCTGGGTTACATAAGGTTGCAGACGTTTTACCGTTCATCTTGATATTTGGATAGGAGGCCTTATCAACCCCAATTCTACCTTTGGATGTCCTCGCTGACAGGCCACCAGAGAAGAAGTTTGAGTGGGTAAGTTTATCCCTATCCCTAGAATGTCTTCTCCACTTCAAGCTTAATGATTTAAAGTCTTGTCAATTTGGTTAACTGGAGCAATACTTTTGCCTTTGCATGGAATTTATCTCTCTGGGGGCGTTATTTCAACAGGTTAAGGTATGATTCATTTCATTCTCTCAATTCTTCTATAAAACTCTTCAAGTTAATAAGCAAACAGAAGCATGCCTCTGTTGACCATTTATTGACACAACTTTTGTTTTCCTCCCTGCAGAGACTGCTCACAAAGTACGGTTCTCTGATCTCAGTGATCTCCATCATCGTTCTCTTCATCTATCTTGTGGCTAGCCCATCAAAATCTGCTGCAAAAGGAAGCAAGAAGAAGCGTTAATTGAAGAATGGGAAGAAGAGAAATAGGTATAACTGTGTTTTACCCAAAATTTGAGAGGATGATATATTTGGCTGATGATAATATTTTGTTGGGTTAGGAAAGGTACAGAAACTTTTTGAGTTGATAGATTTTCTTTGACCCCTAATGAAGTAGAGCCGGAGGAAACAGAGTTTAATTATAGACATCCACGAGAATCAGTTAAAAGTTCAAACAAATGGTGCCAGTAGTTGAGTTGTTGGGTTTTTTTTTTTTTAAAAAAAGTTATATTTCGGATCTGTTCATCATGTTACTGAGTTGTTTCTTCTTTCTTAGCCATGAATCTCATCTTCATTTTCTTTGCTTCTATATAACCTCCAATGGCGAAATGATTCCAAGGTACAAGAGTCCACACCACATAAACTAAGTTTAGTTTTGATTTAATTATATCACATATATTTCAATTTGTGTTT

mRNA sequence

GACTGTTCCACATTTTTGCGTACCTAATTCATCCGACGCCTCCTTCTCCAAACTCCCATTCCGATCATCTCTCTCGCCCTAATTCCGACGATTTCATGGCCCATCCCTTTCTACCTCCTCTGATCCGTCTCCTTTTCGCTTTTCTCTTCCTCTCCTCGACCATCGCAACCTCCGATGTTCCATTCATTGTCGCCCACAAGAAGGCTTCCCTCACTCGCCTCAAATCCGGCGCCGAACGCGTCTCTGTCTCAATCGACATTTACAATCAGGGATCTTCGACCGCATATGATGTAAGTCTGAATGATGCAAGCTGGCCAGGAGATATGTTTGATATTGTGAGTGGTGAGACCTCCAACTCGTGGGAAAGACTTGATGCTGGTGGCCATGTATCTCATTCATTTGAATTGGAAGCAAAATCGAAAGGAATGTTTCATGGTTCACCTGCTGTTGTCACATTCCGTGTCCCTACAAAGTCTGCTTTACAGGAGGCCTTATCAACCCCAATTCTACCTTTGGATGTCCTCGCTGACAGGCCACCAGAGAAGAAGTTTGAGTGGGTAAGAGACTGCTCACAAAGTACGGTTCTCTGATCTCAGTGATCTCCATCATCGTTCTCTTCATCTATCTTGTGGCTAGCCCATCAAAATCTGCTGCAAAAGGAAGCAAGAAGAAGCGTTAATTGAAGAATGGGAAGAAGAGAAATAGGTATAACTGTGTTTTACCCAAAATTTGAGAGGATGATATATTTGGCTGATGATAATATTTTGTTGGGTTAGGAAAGGTACAGAAACTTTTTGAGTTGATAGATTTTCTTTGACCCCTAATGAAGTAGAGCCGGAGGAAACAGAGTTTAATTATAGACATCCACGAGAATCAGTTAAAAGTTCAAACAAATGGTGCCAGTAGTTGAGTTGTTGGGTTTTTTTTTTTTTAAAAAAAGTTATATTTCGGATCTGTTCATCATGTTACTGAGTTGTTTCTTCTTTCTTAGCCATGAATCTCATCTTCATTTTCTTTGCTTCTATATAACCTCCAATGGCGAAATGATTCCAAGGTACAAGAGTCCACACCACATAAACTAAGTTTAGTTTTGATTTAATTATATCACATATATTTCAATTTGTGTTT

Coding sequence (CDS)

CTGTTCCACATTTTTGCGTACCTAATTCATCCGACGCCTCCTTCTCCAAACTCCCATTCCGATCATCTCTCTCGCCCTAATTCCGACGATTTCATGGCCCATCCCTTTCTACCTCCTCTGATCCGTCTCCTTTTCGCTTTTCTCTTCCTCTCCTCGACCATCGCAACCTCCGATGTTCCATTCATTGTCGCCCACAAGAAGGCTTCCCTCACTCGCCTCAAATCCGGCGCCGAACGCGTCTCTGTCTCAATCGACATTTACAATCAGGGATCTTCGACCGCATATGATGTAAGTCTGAATGATGCAAGCTGGCCAGGAGATATGTTTGATATTGTGAGTGGTGAGACCTCCAACTCGTGGGAAAGACTTGATGCTGGTGGCCATGTATCTCATTCATTTGAATTGGAAGCAAAATCGAAAGGAATGTTTCATGGTTCACCTGCTGTTGTCACATTCCGTGTCCCTACAAAGTCTGCTTTACAGGAGGCCTTATCAACCCCAATTCTACCTTTGGATGTCCTCGCTGACAGGCCACCAGAGAAGAAGTTTGAGTGGGTAAGAGACTGCTCACAAAGTACGGTTCTCTGA

Protein sequence

LFHIFAYLIHPTPPSPNSHSDHLSRPNSDDFMAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVTFRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVRDCSQSTVL

Homology

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BLAST of MELO3C014796.2 vs. NCBI nr
Match: XP_008450004.1 (PREDICTED: translocon-associated protein subunit beta [Cucumis melo] >XP_008450005.1 PREDICTED: translocon-associated protein subunit beta [Cucumis melo] >XP_016900804.1 PREDICTED: translocon-associated protein subunit beta [Cucumis melo])

HSP 1 Score: 308.5 bits (789), Expect = 1.6e-80
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 32  MAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 91
           MAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 92  STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVT 151
           STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVT
Sbjct: 61  STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVT 120

Query: 152 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVR 188
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWV+
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVK 156

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BLAST of MELO3C014796.2 vs. NCBI nr
Match: XP_004145695.1 (PREDICTED: translocon-associated protein subunit beta [Cucumis sativus] >XP_004145696.1 PREDICTED: translocon-associated protein subunit beta [Cucumis sativus] >KGN58234.1 hypothetical protein Csa_3G597330 [Cucumis sativus])

HSP 1 Score: 291.2 bits (744), Expect = 2.6e-75
Identity = 145/150 (96.67%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 38  PPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDV 97
           PP+I LLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDV
Sbjct: 3   PPMIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDV 62

Query: 98  SLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVTFRVPTK 157
           SLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKS+GMFHGSPAV+TFRVPTK
Sbjct: 63  SLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSRGMFHGSPAVITFRVPTK 122

Query: 158 SALQEALSTPILPLDVLADRPPEKKFEWVR 188
           SALQEALSTPILPLDVLADRPPEKKFEWV+
Sbjct: 123 SALQEALSTPILPLDVLADRPPEKKFEWVK 152

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BLAST of MELO3C014796.2 vs. NCBI nr
Match: XP_022156478.1 (translocon-associated protein subunit beta [Momordica charantia])

HSP 1 Score: 278.9 bits (712), Expect = 1.3e-71
Identity = 139/156 (89.10%), Postives = 148/156 (94.87%), Query Frame = 0


Query: 32  MAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 91
           MA+P   PLIRLLFA LF++STIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 92  STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVT 151
           STAYDVSLNDASWP D+FDI+SGETS SWERLDAG H+SHSFELEAK+KGMFHGSPAV+T
Sbjct: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 152 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVR 188
           FRVPTKSALQEA STPILPLDVLADRPPEKKFEWV+
Sbjct: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVK 156

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BLAST of MELO3C014796.2 vs. NCBI nr
Match: XP_022935419.1 (translocon-associated protein subunit beta isoform X1 [Cucurbita moschata] >XP_022935420.1 translocon-associated protein subunit beta isoform X2 [Cucurbita moschata])

HSP 1 Score: 271.9 bits (694), Expect = 1.6e-69
Identity = 136/156 (87.18%), Postives = 147/156 (94.23%), Query Frame = 0


Query: 32  MAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 91
           MA+     LI LL AFLF+SSTIA+SDVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGS
Sbjct: 1   MANLIQARLIHLLLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 92  STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVT 151
           STAYDV+LNDASWPGD+FDIVSGETS SWERLDAGGH+SHSFELEAK+KGMFHGSPAV+T
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 152 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVR 188
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWV+
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVK 156

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BLAST of MELO3C014796.2 vs. NCBI nr
Match: XP_022928574.1 (translocon-associated protein subunit beta-like isoform X1 [Cucurbita moschata] >XP_023529270.1 translocon-associated protein subunit beta-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271.9 bits (694), Expect = 1.6e-69
Identity = 136/156 (87.18%), Postives = 146/156 (93.59%), Query Frame = 0


Query: 32  MAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 91
           MA+P   PL+ +L A L +SSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MANPTPAPLVYVLLALLLVSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 92  STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVT 151
           STAYDVSLNDASWPGD+FD++SGETS SWERLDAGGH+SHSFELEAK+KGMFHGSPAVVT
Sbjct: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120

Query: 152 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVR 188
           FRVPTKSALQEALSTPILPLDVLADR PE KFEWV+
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRLPENKFEWVK 156

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BLAST of MELO3C014796.2 vs. TAIR10
Match: AT5G14030.1 (translocon-associated protein beta (TRAPB) family protein)

HSP 1 Score: 200.7 bits (509), Expect = 8.4e-52
Identity = 98/145 (67.59%), Postives = 120/145 (82.76%), Query Frame = 0


Query: 40  LIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSL 99
           LI  +  F+ +S++ ATS+VPF+V HKKA+L RLKSGAERVSVS DIYNQGSS+AYDV+L
Sbjct: 9   LISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGSSSAYDVTL 68

Query: 100 NDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVTFRVPTKSA 159
            D SW    F++V+G TS SWERLDAGG +SHS ELEAK KG+F+G+PAVVTFR+PTK A
Sbjct: 69  TDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVTFRIPTKPA 128

Query: 160 LQEALSTPILPLDVLADRPPEKKFE 185
           LQEA STP+LPLD+LAD+PP K  +
Sbjct: 129 LQEAYSTPLLPLDILADKPPTKPLD 153

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BLAST of MELO3C014796.2 vs. Swiss-Prot
Match: sp|P23438|SSRB_CANLF (Translocon-associated protein subunit beta OS=Canis lupus familiaris OX=9615 GN=SSR2 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.2e-08
Identity = 40/143 (27.97%), Postives = 70/143 (48.95%), Query Frame = 0


Query: 41  IRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSLN 100
           +RLL + L     ++ ++    +   K+ L R       +++  +IYN GSS A DV L+
Sbjct: 1   MRLLASVLLALFAVSHAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELS 60

Query: 101 DASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVTFRVPTKSAL 160
           D S+P + F IVSG  +  W+R+    +VSH+  L     G F+ + A VT+       +
Sbjct: 61  DDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTYLAQEDGPV 120

Query: 161 QEALSTPILPLDVLADRPPEKKF 184
               ++      +LA R  +++F
Sbjct: 121 VIGFTSAPGQGGILAQREFDRRF 143

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BLAST of MELO3C014796.2 vs. Swiss-Prot
Match: sp|Q5E9E4|SSRB_BOVIN (Translocon-associated protein subunit beta OS=Bos taurus OX=9913 GN=SSR2 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.3e-08
Identity = 42/141 (29.79%), Postives = 69/141 (48.94%), Query Frame = 0


Query: 43  LLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSLNDA 102
           L FA L L +     +   ++A  K+ L R       +++  +IYN GSS A DV L+D 
Sbjct: 4   LAFAVLALFAVTQAEEGARLLA-SKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDD 63

Query: 103 SWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVTFRVPTKSALQE 162
           S+P + F IVSG  +  W+R+    +VSH+  L     G F+ + A VT+       +  
Sbjct: 64  SFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTYLAQEDGPVVI 123

Query: 163 ALSTPILPLDVLADRPPEKKF 184
             ++      +LA R  +++F
Sbjct: 124 GFTSAPGQGGILAQREFDRRF 143

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BLAST of MELO3C014796.2 vs. Swiss-Prot
Match: sp|P43308|SSRB_HUMAN (Translocon-associated protein subunit beta OS=Homo sapiens OX=9606 GN=SSR2 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-07
Identity = 31/86 (36.05%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 67  KASLTRLKSGAERVSVSIDIYNQGSSTAYDVSLNDASWPGDMFDIVSGETSNSWERLDAG 126
           K+ L R       +++  +IYN GSS A DV L+D S+P + F IVSG  +  W+R+   
Sbjct: 27  KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query: 127 GHVSHSFELEAKSKGMFHGSPAVVTF 153
            +VSH+  L     G F+ + A +T+
Sbjct: 87  SNVSHTVVLRPLKAGYFNFTSATITY 112

[Close]

BLAST of MELO3C014796.2 vs. Swiss-Prot
Match: sp|Q9CPW5|SSRB_MOUSE (Translocon-associated protein subunit beta OS=Mus musculus OX=10090 GN=Ssr2 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.7e-07
Identity = 34/112 (30.36%), Postives = 58/112 (51.79%), Query Frame = 0


Query: 41  IRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSLN 100
           +RLL   +     ++ ++    +   K+ L R       +++  +IYN GSS A DV L+
Sbjct: 1   MRLLAVVVLALLAVSQAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELS 60

Query: 101 DASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVTF 153
           D S+P + F IVSG  +  W+R+    +VSH+  L     G F+ + A +T+
Sbjct: 61  DDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY 112

[Close]

BLAST of MELO3C014796.2 vs. TrEMBL
Match: tr|A0A1S3BNZ1|A0A1S3BNZ1_CUCME (Translocon-associated protein subunit beta OS=Cucumis melo OX=3656 GN=LOC103491721 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.0e-80
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 32  MAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 91
           MAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 92  STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVT 151
           STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVT
Sbjct: 61  STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVT 120

Query: 152 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVR 188
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWV+
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVK 156

[Close]

BLAST of MELO3C014796.2 vs. TrEMBL
Match: tr|A0A0A0LBA3|A0A0A0LBA3_CUCSA (Translocon-associated protein subunit beta OS=Cucumis sativus OX=3659 GN=Csa_3G597330 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.7e-75
Identity = 145/150 (96.67%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 38  PPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDV 97
           PP+I LLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDV
Sbjct: 3   PPMIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDV 62

Query: 98  SLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVTFRVPTK 157
           SLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKS+GMFHGSPAV+TFRVPTK
Sbjct: 63  SLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSRGMFHGSPAVITFRVPTK 122

Query: 158 SALQEALSTPILPLDVLADRPPEKKFEWVR 188
           SALQEALSTPILPLDVLADRPPEKKFEWV+
Sbjct: 123 SALQEALSTPILPLDVLADRPPEKKFEWVK 152

[Close]

BLAST of MELO3C014796.2 vs. TrEMBL
Match: tr|A0A2P6S6K9|A0A2P6S6K9_ROSCH (Translocon-associated protein subunit beta OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0176281 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 4.1e-61
Identity = 120/156 (76.92%), Postives = 135/156 (86.54%), Query Frame = 0


Query: 32  MAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 91
           MA P + PLI  L + L  +S +A+SD PFIVAHKKASL RLKSGAERVSVSIDIYNQGS
Sbjct: 1   MAKPIVKPLILTLLSLLLFTSVLASSDSPFIVAHKKASLNRLKSGAERVSVSIDIYNQGS 60

Query: 92  STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVT 151
           STAYDVSL+D SWP D+FD VSG  S SWERLDAGG +SHSFELEAK+KG+F G+PAV+T
Sbjct: 61  STAYDVSLSDESWPQDLFDFVSGNASKSWERLDAGGIISHSFELEAKTKGLFSGAPAVIT 120

Query: 152 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVR 188
           FR+PTK+ALQEA STPILPLDVLADRPPEKKFEWV+
Sbjct: 121 FRIPTKAALQEAYSTPILPLDVLADRPPEKKFEWVK 156

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BLAST of MELO3C014796.2 vs. TrEMBL
Match: tr|A0A067LCL0|A0A067LCL0_JATCU (Translocon-associated protein subunit beta OS=Jatropha curcas OX=180498 GN=JCGZ_26847 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.0e-59
Identity = 116/156 (74.36%), Postives = 136/156 (87.18%), Query Frame = 0


Query: 32  MAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 91
           MA+P + PLI LL A   +SS++A+SDVPFIVAHKKA+L RLKSGAERVSVS+DIYNQG+
Sbjct: 1   MANPVVKPLISLLVALFLISSSLASSDVPFIVAHKKATLNRLKSGAERVSVSVDIYNQGT 60

Query: 92  STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVT 151
           STAYDVSL D  WP D+FD++SG TS SWERLDAGG +SHSFELE K K +F+GSPA++T
Sbjct: 61  STAYDVSLVDKDWPEDLFDVISGNTSKSWERLDAGGILSHSFELEGKVKAIFYGSPALIT 120

Query: 152 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVR 188
           FRVPTK+ALQEALSTPI PLDVLA+RPPEKKFEW +
Sbjct: 121 FRVPTKAALQEALSTPIQPLDVLAERPPEKKFEWAK 156

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BLAST of MELO3C014796.2 vs. TrEMBL
Match: tr|A0A2N9HNI4|A0A2N9HNI4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41400 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 3.9e-59
Identity = 120/154 (77.92%), Postives = 133/154 (86.36%), Query Frame = 0


Query: 32  MAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 91
           MAH   P L   L A L +SST+ TSDVPFIVAHKKA+L RLKSGAERVSVSI IYNQGS
Sbjct: 1   MAH---PTLFGALLALLLVSSTLGTSDVPFIVAHKKATLNRLKSGAERVSVSIHIYNQGS 60

Query: 92  STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVT 151
           STAYDVSL D SW  D+FDIVSG TSNSWERLDAGG ++HSFELEAK+KG+F+G+PAV+T
Sbjct: 61  STAYDVSLTDDSWSQDVFDIVSGNTSNSWERLDAGGLLTHSFELEAKTKGLFYGAPAVIT 120

Query: 152 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEW 186
           FR+PTK+A QEA STPILPLDVLADRPPEKKFEW
Sbjct: 121 FRIPTKAAFQEAYSTPILPLDVLADRPPEKKFEW 151

The following BLAST results are available for this feature:

BLAST of MELO3C014796.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450004.1	1.6e-80	99.36	PREDICTED: translocon-associated protein subunit beta [Cucumis melo] >XP_0084500...	[more]
XP_004145695.1	2.6e-75	96.67	PREDICTED: translocon-associated protein subunit beta [Cucumis sativus] >XP_0041...	[more]
XP_022156478.1	1.3e-71	89.10	translocon-associated protein subunit beta [Momordica charantia]	[more]
XP_022935419.1	1.6e-69	87.18	translocon-associated protein subunit beta isoform X1 [Cucurbita moschata] >XP_0...	[more]
XP_022928574.1	1.6e-69	87.18	translocon-associated protein subunit beta-like isoform X1 [Cucurbita moschata] ...	[more]

BLAST of MELO3C014796.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G14030.1	8.4e-52	67.59	translocon-associated protein beta (TRAPB) family protein	[more]

BLAST of MELO3C014796.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P23438\|SSRB_CANLF	7.2e-08	27.97	Translocon-associated protein subunit beta OS=Canis lupus familiaris OX=9615 GN=...	[more]
sp\|Q5E9E4\|SSRB_BOVIN	9.3e-08	29.79	Translocon-associated protein subunit beta OS=Bos taurus OX=9913 GN=SSR2 PE=2 SV...	[more]
sp\|P43308\|SSRB_HUMAN	1.6e-07	36.05	Translocon-associated protein subunit beta OS=Homo sapiens OX=9606 GN=SSR2 PE=1 ...	[more]
sp\|Q9CPW5\|SSRB_MOUSE	2.7e-07	30.36	Translocon-associated protein subunit beta OS=Mus musculus OX=10090 GN=Ssr2 PE=1...	[more]

BLAST of MELO3C014796.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BNZ1\|A0A1S3BNZ1_CUCME	1.0e-80	99.36	Translocon-associated protein subunit beta OS=Cucumis melo OX=3656 GN=LOC1034917...	[more]
tr\|A0A0A0LBA3\|A0A0A0LBA3_CUCSA	1.7e-75	96.67	Translocon-associated protein subunit beta OS=Cucumis sativus OX=3659 GN=Csa_3G5...	[more]
tr\|A0A2P6S6K9\|A0A2P6S6K9_ROSCH	4.1e-61	76.92	Translocon-associated protein subunit beta OS=Rosa chinensis OX=74649 GN=RchiOBH...	[more]
tr\|A0A067LCL0\|A0A067LCL0_JATCU	1.0e-59	74.36	Translocon-associated protein subunit beta OS=Jatropha curcas OX=180498 GN=JCGZ_...	[more]
tr\|A0A2N9HNI4\|A0A2N9HNI4_FAGSY	3.9e-59	77.92	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41400 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034976	response to endoplasmic reticulum stress
biological_process	GO:0008150	biological_process
biological_process	GO:0009627	systemic acquired resistance
biological_process	GO:0006613	cotranslational protein targeting to membrane
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014796.2.1	MELO3C014796.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF05753	TRAP_beta	coord: 46..186 e-value: 1.7E-49 score: 167.5
None	No IPR available	PANTHER	PTHR12861	TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNIT	coord: 38..188
None	No IPR available	PANTHER	PTHR12861:SF5	SUBFAMILY NOT NAMED	coord: 38..188

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C014796.2	Csa3G597330	Cucumber (Chinese Long) v2	cumedB240
MELO3C014796.2	CSPI03G26120	Wild cucumber (PI 183967)	cpimedB241
MELO3C014796.2	Cucsa.156120	Cucumber (Gy14) v1	cgymedB258
MELO3C014796.2	CmaCh11G015400	Cucurbita maxima (Rimu)	cmamedB150
MELO3C014796.2	CmaCh14G007530	Cucurbita maxima (Rimu)	cmamedB271
MELO3C014796.2	CmoCh14G007670	Cucurbita moschata (Rifu)	cmomedB256
MELO3C014796.2	CmoCh11G015820	Cucurbita moschata (Rifu)	cmomedB140
MELO3C014796.2	Lsi05G004600	Bottle gourd (USVL1VR-Ls)	lsimedB389
MELO3C014796.2	Cp4.1LG04g06200	Cucurbita pepo (Zucchini)	cpemedB765
MELO3C014796.2	Cp4.1LG03g06790	Cucurbita pepo (Zucchini)	cpemedB691
MELO3C014796.2	CsGy3G024450	Cucumber (Gy14) v2	cgybmedB217
MELO3C014796.2	Cla003220	Watermelon (97103) v1	medwmB455
MELO3C014796.2	ClCG05G012820	Watermelon (Charleston Gray)	medwcgB418
MELO3C014796.2	Cla97C05G094480	Watermelon (97103) v2	medwmbB425
MELO3C014796.2	Bhi01G001544	Wax gourd	medwgoB538
MELO3C014796.2	Carg09630	Silver-seed gourd	carmedB0447
MELO3C014796.2	Carg15529	Silver-seed gourd	carmedB0379
MELO3C014796.2	CsaV3_3G027640	Cucumber (Chinese Long) v3	cucmedB248

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C014796.2	Cucurbita maxima (Rimu)	cmamedB148
MELO3C014796.2	Cucurbita maxima (Rimu)	cmamedB276
MELO3C014796.2	Cucurbita moschata (Rifu)	cmomedB138
MELO3C014796.2	Cucurbita pepo (Zucchini)	cpemedB763