Cla97C05G094480 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G094480
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Translocon-associated protein subunit beta
Location	Cla97Chr05 : 16666072 .. 16668225 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAATCCGATTCAGGCTCCTCTGATCCATCTCCTCTTGGCTTTGCTCCTCGTCTCGTCAACGATCGCAACCTCCGATGTTCCATTCATTGTCGCGCACAAGAAGGCGTCGCTCACTCGCCTCAAAACCGGTGTCGAACGTGTCTCGGTCTCAATCGACATTTACAATCAGGGATCTTCGTATGTTCTCTTCAATTCCTTTAATCTGATTTCGCTTTTGTTTTCGAGATTCAGCTTTACTCACTCTGTGCTCTCTGAGTTGTAGATCGAATTGTTCTTTGCGCATGCGTGCTTTGATTCATTATGTTTTGTTCTGGATCTAAATTGGATTTGTTCCTACGTTGTTCCAGTTTCTTTTTTCCTTCGCTTCTCTCTCTTGTGTATGTGACAGGTTTTAAGTAGTCAGAAAATGTTAGGTTCAGGCGTCAGGAAAATGTTTTCAATGATAGAAGAATAGACGCTTTCATGGATGTGAAATTTGCTGCATTTGTATTTTATGAATTGTGGAAAAAGTTCGTATGTTTTGGTTCGATACGAAGATCCTCAAGACTATTATGAACTGGAACCAGGCGTAACTCTCCTGGCTGCATCAAGATATTCTGTATTTTCGTTTTTTTTTTTAATGTAAATTTCGCAAAAGGGTTTACCAAGTCGTTTTATTTTGATGATTGCGGCATTGGCTGTCGGAATAGGCGATCATTCTAGGAGTTGTGCCTAGATCTTGTTTCACATTAAAAATCTGTTCATTAGGTCTGCTATATTTGCCATGCAACAAGAAGATATGAACTGCTCTTTGAGTTATTGTCTGTCAAAATTTTACAATTTGATGTACACTTATTTGTTTATGTACGGTGACTGCGGGTGAGAGCAGGGCTGTGTGTGTGTGATGAGCACTAACTGAAATTTAGAAATTGTCTAAACCAAAGTAGCACAAGTATCTATTTGACCTACATGAAGCAAACATTGAGAAGCTTGGAATGGGGCTTCTGACATGTTTACTTGGGCTTCTTTATAAGATAAAGGAGGTGGTTTATAAGGAACTTTGGCAGGGAAGAGTTGCCTGATTGCTTTGTTTGGCCTTTGTACTGTCCATGAAGCAGATTATCGTGCAAATTTATCTTTTCAATTTTATATGAATATAGTATTTCTTCATTTATGCGTTGCTTAAAGTTTCTGTAGTTTTCTTATCTTATGTTATCCCTGACTAGAGGGAAGGGAATCTTTTCCTTTTTCCCTTAACTCTGTTGCCTTTTGTATACTTTCATTTCTAAGTAGCCTGGTTTTTAATTTGTCTCCTCTTTTTTGTATTTTCACTTATAATGGTTACAGGACCGCATATGATGTAAGTCTGAACGACGCAAGCTGGCCAGGAGATATGTTTGATATCGTGAGTGGTGAGACTGCCAAATCGTGGGAAAGACTTGATGCGTAAGTGATACCATTTGTATAGTATTCTTTCCAATATGTCATGGTACCCTCCTTTGGGTTTTTGTGATTCTAACACAAATCTGCTGTTTGACAGTGGTGCTCATATATCTCATTCATTTGAATTAGAAGCAAAAACAAAAGGAATGTTTCATGGTTCACCTGCTGTTATCACATTCCGTGTCCCTACGAAGTCTGCTTTGCAGGTCAAATATCCTTTCAATTATGATTATGTTCTGGTTACATAAGGTCACAGACATTTACCATTCTTCTGAATATCTGTAGGAGGCCTTATCGACCCCAATTCTACCTTTGGATGTCCTCGCTGACAGGCCACCGGAGAAGAAGTTTGAGTGGGTAAGTTTATCCCTAGAGTGTCTTTTCCGCTTCAAGCATAATGATCTAAAATCTTGTCAATTTGGTTAACTGGAGCAATCTTTTTGTCTTTGCATGGAATTTATCTTTCACCCGGGGCGTAATTTCAACAGGTTAAGGTATGTTCCATTTCATTCTCCCAATTCTTCTATAAAACTCTTTTAAGTGCATAAGAAGACAGAAGCACGTCTTTGTTGACCATTTATTCACACGAGATTTGTTTTCCTCCCTGCAGAGGCTGCTTGCAAAGTATGGGTCTCTGATCTCGGTGATCTCCATCGTCGTTCTCTTCATATATCTTGTGGCTAGCCCATCGAAATCTGCTGCAAAGGGAAGCAAGAAGAAGCGTTAA

mRNA sequence

ATGGCGAATCCGATTCAGGCTCCTCTGATCCATCTCCTCTTGGCTTTGCTCCTCGTCTCGTCAACGATCGCAACCTCCGATGTTCCATTCATTGTCGCGCACAAGAAGGCGTCGCTCACTCGCCTCAAAACCGGTGTCGAACGTGTCTCGGTCTCAATCGACATTTACAATCAGGGATCTTCGACCGCATATGATGTAAGTCTGAACGACGCAAGCTGGCCAGGAGATATGTTTGATATCGTGAGTGGTGAGACTGCCAAATCGTGGGAAAGACTTGATGCTGGTGCTCATATATCTCATTCATTTGAATTAGAAGCAAAAACAAAAGGAATGTTTCATGGTTCACCTGCTGTTATCACATTCCGTGTCCCTACGAAGTCTGCTTTGCAGGAGGCCTTATCGACCCCAATTCTACCTTTGGATGTCCTCGCTGACAGGCCACCGGAGAAGAAGTTTGAGTGGGTTAAGAGGCTGCTTGCAAAGTATGGGTCTCTGATCTCGGTGATCTCCATCGTCGTTCTCTTCATATATCTTGTGGCTAGCCCATCGAAATCTGCTGCAAAGGGAAGCAAGAAGAAGCGTTAA

Coding sequence (CDS)

ATGGCGAATCCGATTCAGGCTCCTCTGATCCATCTCCTCTTGGCTTTGCTCCTCGTCTCGTCAACGATCGCAACCTCCGATGTTCCATTCATTGTCGCGCACAAGAAGGCGTCGCTCACTCGCCTCAAAACCGGTGTCGAACGTGTCTCGGTCTCAATCGACATTTACAATCAGGGATCTTCGACCGCATATGATGTAAGTCTGAACGACGCAAGCTGGCCAGGAGATATGTTTGATATCGTGAGTGGTGAGACTGCCAAATCGTGGGAAAGACTTGATGCTGGTGCTCATATATCTCATTCATTTGAATTAGAAGCAAAAACAAAAGGAATGTTTCATGGTTCACCTGCTGTTATCACATTCCGTGTCCCTACGAAGTCTGCTTTGCAGGAGGCCTTATCGACCCCAATTCTACCTTTGGATGTCCTCGCTGACAGGCCACCGGAGAAGAAGTTTGAGTGGGTTAAGAGGCTGCTTGCAAAGTATGGGTCTCTGATCTCGGTGATCTCCATCGTCGTTCTCTTCATATATCTTGTGGCTAGCCCATCGAAATCTGCTGCAAAGGGAAGCAAGAAGAAGCGTTAA

Protein sequence

MANPIQAPLIHLLLALLLVSSTIATSDVPFIVAHKKASLTRLKTGVERVSVSIDIYNQGSSTAYDVSLNDASWPGDMFDIVSGETAKSWERLDAGAHISHSFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVISIVVLFIYLVASPSKSAAKGSKKKR

Homology

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BLAST of Cla97C05G094480 vs. NCBI nr
Match: XP_022156478.1 (translocon-associated protein subunit beta [Momordica charantia])

HSP 1 Score: 347.8 bits (891), Expect = 2.3e-92
Identity = 180/194 (92.78%), Postives = 188/194 (96.91%), Query Frame = 0


Query: 1   MANPIQAPLIHLLLALLLVSSTIATSDVPFIVAHKKASLTRLKTGVERVSVSIDIYNQGS 60
           MANPIQ+PLI LL ALL V+STIATSDVPFIVAHKKASLTRLK+G ERVSVSIDIYNQGS
Sbjct: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDMFDIVSGETAKSWERLDAGAHISHSFELEAKTKGMFHGSPAVIT 120
           STAYDVSLNDASWP D+FDI+SGET+KSWERLDAGAH+SHSFELEAKTKGMFHGSPAVIT
Sbjct: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FRVPTKSALQEA STPILPLDVLADRPPEKKFEWVKRLLAKYGSLISV+SIVVLFIYLVA
Sbjct: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIVVLFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Cla97C05G094480 vs. NCBI nr
Match: XP_022983434.1 (translocon-associated protein subunit beta isoform X1 [Cucurbita maxima])

HSP 1 Score: 345.9 bits (886), Expect = 8.9e-92
Identity = 179/194 (92.27%), Postives = 189/194 (97.42%), Query Frame = 0


Query: 1   MANPIQAPLIHLLLALLLVSSTIATSDVPFIVAHKKASLTRLKTGVERVSVSIDIYNQGS 60
           MAN IQA LIHLLLALL VSSTIA+SDVPFIVAHKKA+LTRLK+GVERVSVSI+IYNQGS
Sbjct: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STAYDVSLNDASWPGDMFDIVSGETAKSWERLDAGAHISHSFELEAKTKGMFHGSPAVIT 120
           STAYDV+LNDASWPGD+FDIVSGET+KSWERLDAG H+SHSFELEAKTKGMFHGSPAVIT
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISV+S VVLF+YLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

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BLAST of Cla97C05G094480 vs. NCBI nr
Match: XP_022935419.1 (translocon-associated protein subunit beta isoform X1 [Cucurbita moschata] >XP_022935420.1 translocon-associated protein subunit beta isoform X2 [Cucurbita moschata])

HSP 1 Score: 344.4 bits (882), Expect = 2.6e-91
Identity = 178/194 (91.75%), Postives = 188/194 (96.91%), Query Frame = 0


Query: 1   MANPIQAPLIHLLLALLLVSSTIATSDVPFIVAHKKASLTRLKTGVERVSVSIDIYNQGS 60
           MAN IQA LIHLLLA L VSSTIA+SDVPFIVAHKKA+LTRLK+GVERVSVSI+IYNQGS
Sbjct: 1   MANLIQARLIHLLLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STAYDVSLNDASWPGDMFDIVSGETAKSWERLDAGAHISHSFELEAKTKGMFHGSPAVIT 120
           STAYDV+LNDASWPGD+FDIVSGET+KSWERLDAG H+SHSFELEAKTKGMFHGSPAVIT
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISV+S VVLF+YLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Cla97C05G094480 vs. NCBI nr
Match: XP_022983435.1 (translocon-associated protein subunit beta isoform X2 [Cucurbita maxima])

HSP 1 Score: 344.0 bits (881), Expect = 3.4e-91
Identity = 178/194 (91.75%), Postives = 188/194 (96.91%), Query Frame = 0


Query: 1   MANPIQAPLIHLLLALLLVSSTIATSDVPFIVAHKKASLTRLKTGVERVSVSIDIYNQGS 60
           MAN IQA LIHLLLALL VSSTIA+SDVPFIVAHKKA+LTRLK+GVERVSVSI+IYNQGS
Sbjct: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STAYDVSLNDASWPGDMFDIVSGETAKSWERLDAGAHISHSFELEAKTKGMFHGSPAVIT 120
           STAYDV+LNDASWPGD+FDIVSGET+KSWERLDAG H+SHSFELEAKTKGMFHGSPAVIT
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEW KRLLAKYGSLISV+S VVLF+YLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Cla97C05G094480 vs. NCBI nr
Match: XP_022928574.1 (translocon-associated protein subunit beta-like isoform X1 [Cucurbita moschata] >XP_023529270.1 translocon-associated protein subunit beta-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 341.7 bits (875), Expect = 1.7e-90
Identity = 175/194 (90.21%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MANPIQAPLIHLLLALLLVSSTIATSDVPFIVAHKKASLTRLKTGVERVSVSIDIYNQGS 60
           MANP  APL+++LLALLLVSSTIATSDVPFIVAHKKASLTRLK+G ERVSVSIDIYNQGS
Sbjct: 1   MANPTPAPLVYVLLALLLVSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDMFDIVSGETAKSWERLDAGAHISHSFELEAKTKGMFHGSPAVIT 120
           STAYDVSLNDASWPGD+FD++SGET+KSWERLDAG H+SHSFELEAKTKGMFHGSPAV+T
Sbjct: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FRVPTKSALQEALSTPILPLDVLADR PE KFEWVKRLLAKYGSLISV SIV+LFIYLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRLPENKFEWVKRLLAKYGSLISVNSIVILFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKS+AKGSKKKR
Sbjct: 181 SPSKSSAKGSKKKR 194

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BLAST of Cla97C05G094480 vs. TrEMBL
Match: tr|A0A1S3BNZ1|A0A1S3BNZ1_CUCME (Translocon-associated protein subunit beta OS=Cucumis melo OX=3656 GN=LOC103491721 PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 3.2e-90
Identity = 175/194 (90.21%), Postives = 183/194 (94.33%), Query Frame = 0


Query: 1   MANPIQAPLIHLLLALLLVSSTIATSDVPFIVAHKKASLTRLKTGVERVSVSIDIYNQGS 60
           MA+P   PLI LL A L +SSTIATSDVPFIVAHKKASLTRLK+G ERVSVSIDIYNQGS
Sbjct: 1   MAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDMFDIVSGETAKSWERLDAGAHISHSFELEAKTKGMFHGSPAVIT 120
           STAYDVSLNDASWPGDMFDIVSGET+ SWERLDAG H+SHSFELEAK+KGMFHGSPAV+T
Sbjct: 61  STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLL KYGSLISVISI+VLFIYLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLTKYGSLISVISIIVLFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Cla97C05G094480 vs. TrEMBL
Match: tr|A0A0A0LBA3|A0A0A0LBA3_CUCSA (Translocon-associated protein subunit beta OS=Cucumis sativus OX=3659 GN=Csa_3G597330 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 2.1e-89
Identity = 172/187 (91.98%), Postives = 181/187 (96.79%), Query Frame = 0


Query: 8   PLIHLLLALLLVSSTIATSDVPFIVAHKKASLTRLKTGVERVSVSIDIYNQGSSTAYDVS 67
           P+IHLL A L +SSTIATSDVPFIVAHKKASLTRLK+G ERVSVSIDIYNQGSSTAYDVS
Sbjct: 4   PMIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVS 63

Query: 68  LNDASWPGDMFDIVSGETAKSWERLDAGAHISHSFELEAKTKGMFHGSPAVITFRVPTKS 127
           LNDASWPGDMFDIVSGET+ SWERLDAG H+SHSFELEAK++GMFHGSPAVITFRVPTKS
Sbjct: 64  LNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSRGMFHGSPAVITFRVPTKS 123

Query: 128 ALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVISIVVLFIYLVASPSKSAA 187
           ALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISV+SI+VLFIYLVASPSKSAA
Sbjct: 124 ALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIYLVASPSKSAA 183

Query: 188 KGSKKKR 195
           KGSKKKR
Sbjct: 184 KGSKKKR 190

[Close]

BLAST of Cla97C05G094480 vs. TrEMBL
Match: tr|A0A2P6S6K9|A0A2P6S6K9_ROSCH (Translocon-associated protein subunit beta OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0176281 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 2.8e-78
Identity = 158/195 (81.03%), Postives = 173/195 (88.72%), Query Frame = 0


Query: 1   MANPIQAPLIHLLLALLLVSSTIATSDVPFIVAHKKASLTRLKTGVERVSVSIDIYNQGS 60
           MA PI  PLI  LL+LLL +S +A+SD PFIVAHKKASL RLK+G ERVSVSIDIYNQGS
Sbjct: 1   MAKPIVKPLILTLLSLLLFTSVLASSDSPFIVAHKKASLNRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDMFDIVSGETAKSWERLDAGAHISHSFELEAKTKGMFHGSPAVIT 120
           STAYDVSL+D SWP D+FD VSG  +KSWERLDAG  ISHSFELEAKTKG+F G+PAVIT
Sbjct: 61  STAYDVSLSDESWPQDLFDFVSGNASKSWERLDAGGIISHSFELEAKTKGLFSGAPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FR+PTK+ALQEA STPILPLDVLADRPPEKKFEWVKRLLAKYGSLISV+SIVVLF+YLVA
Sbjct: 121 FRIPTKAALQEAYSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVLSIVVLFVYLVA 180

Query: 181 SPSKS-AAKGSKKKR 195
           +P KS  AKGSKKKR
Sbjct: 181 TPGKSGGAKGSKKKR 195

[Close]

BLAST of Cla97C05G094480 vs. TrEMBL
Match: tr|A0A067LCL0|A0A067LCL0_JATCU (Translocon-associated protein subunit beta OS=Jatropha curcas OX=180498 GN=JCGZ_26847 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 7.0e-77
Identity = 152/194 (78.35%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 1   MANPIQAPLIHLLLALLLVSSTIATSDVPFIVAHKKASLTRLKTGVERVSVSIDIYNQGS 60
           MANP+  PLI LL+AL L+SS++A+SDVPFIVAHKKA+L RLK+G ERVSVS+DIYNQG+
Sbjct: 1   MANPVVKPLISLLVALFLISSSLASSDVPFIVAHKKATLNRLKSGAERVSVSVDIYNQGT 60

Query: 61  STAYDVSLNDASWPGDMFDIVSGETAKSWERLDAGAHISHSFELEAKTKGMFHGSPAVIT 120
           STAYDVSL D  WP D+FD++SG T+KSWERLDAG  +SHSFELE K K +F+GSPA+IT
Sbjct: 61  STAYDVSLVDKDWPEDLFDVISGNTSKSWERLDAGGILSHSFELEGKVKAIFYGSPALIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FRVPTK+ALQEALSTPI PLDVLA+RPPEKKFEW KRLLAKYGSLISVISI+VLFIYLVA
Sbjct: 121 FRVPTKAALQEALSTPIQPLDVLAERPPEKKFEWAKRLLAKYGSLISVISIMVLFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPS SAAK SKK+R
Sbjct: 181 SPS-SAAKASKKRR 193

[Close]

BLAST of Cla97C05G094480 vs. TrEMBL
Match: tr|A0A2C9UZH7|A0A2C9UZH7_MANES (Translocon-associated protein subunit beta OS=Manihot esculenta OX=3983 GN=MANES_11G078900 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.7e-75
Identity = 151/195 (77.44%), Postives = 173/195 (88.72%), Query Frame = 0


Query: 1   MANPIQAPLIHLLLALLLVSSTIATSDVPFIVAHKKASLTRLKTGVERVSVSIDIYNQGS 60
           MANPI  PLI +L+ L LVSS++AT+DVPFIVA+KKA+L RLK+  ERVSV+IDIYNQG+
Sbjct: 1   MANPISKPLILILVFLFLVSSSLATTDVPFIVANKKATLNRLKSSAERVSVTIDIYNQGT 60

Query: 61  STAYDVSLNDASWPGDMFDIVSGETAKSWERLDAGAHISHSFELEAKTKGMFHGSPAVIT 120
           STAYDVSL D  WP D+FDI+SG T++SWERLDAG  +SHSFELE K KG F+GSPAVIT
Sbjct: 61  STAYDVSLVDDHWPQDIFDIISGNTSQSWERLDAGGILSHSFELEGKVKGSFYGSPAVIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FR+PTKSALQEA STPILPLDVLADRPPEKKFEW KRLLAKYGSLISV++IVVLF+YLVA
Sbjct: 121 FRIPTKSALQEAYSTPILPLDVLADRPPEKKFEWAKRLLAKYGSLISVVTIVVLFVYLVA 180

Query: 181 SPSKS-AAKGSKKKR 195
           +PSKS AAK SKK+R
Sbjct: 181 TPSKSTAAKASKKRR 195

[Close]

BLAST of Cla97C05G094480 vs. Swiss-Prot
Match: sp|Q5E9E4|SSRB_BOVIN (Translocon-associated protein subunit beta OS=Bos taurus OX=9913 GN=SSR2 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-07
Identity = 34/117 (29.06%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 36  KASLTRLKTGVERVSVSIDIYNQGSSTAYDVSLNDASWPGDMFDIVSGETAKSWERLDAG 95
           K+ L R       +++  +IYN GSS A DV L+D S+P + F IVSG     W+R+   
Sbjct: 27  KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query: 96  AHISHSFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKF 153
           +++SH+  L     G F+ + A +T+       +    ++      +LA R  +++F
Sbjct: 87  SNVSHTVVLRPLKAGYFNFTSATVTYLAQEDGPVVIGFTSAPGQGGILAQREFDRRF 143

[Close]

BLAST of Cla97C05G094480 vs. Swiss-Prot
Match: sp|Q9CPW5|SSRB_MOUSE (Translocon-associated protein subunit beta OS=Mus musculus OX=10090 GN=Ssr2 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.5e-07
Identity = 34/112 (30.36%), Postives = 59/112 (52.68%), Query Frame = 0


Query: 10  IHLLLALLLVSSTIATSDVPFIVAHKKASLTRLKTGVERVSVSIDIYNQGSSTAYDVSLN 69
           + LL  ++L    ++ ++    +   K+ L R       +++  +IYN GSS A DV L+
Sbjct: 1   MRLLAVVVLALLAVSQAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELS 60

Query: 70  DASWPGDMFDIVSGETAKSWERLDAGAHISHSFELEAKTKGMFHGSPAVITF 122
           D S+P + F IVSG     W+R+   +++SH+  L     G F+ + A IT+
Sbjct: 61  DDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY 112

[Close]

BLAST of Cla97C05G094480 vs. Swiss-Prot
Match: sp|P23438|SSRB_CANLF (Translocon-associated protein subunit beta OS=Canis lupus familiaris OX=9615 GN=SSR2 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-06
Identity = 47/183 (25.68%), Postives = 88/183 (48.09%), Query Frame = 0


Query: 10  IHLLLALLLVSSTIATSDVPFIVAHKKASLTRLKTGVERVSVSIDIYNQGSSTAYDVSLN 69
           + LL ++LL    ++ ++    +   K+ L R       +++  +IYN GSS A DV L+
Sbjct: 1   MRLLASVLLALFAVSHAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELS 60

Query: 70  DASWPGDMFDIVSGETAKSWERLDAGAHISHSFELEAKTKGMFHGSPAVITFRVPTKSAL 129
           D S+P + F IVSG     W+R+   +++SH+  L     G F+ + A +T+       +
Sbjct: 61  DDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTYLAQEDGPV 120

Query: 130 QEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVISIVVLFIYLVASPSKSAAKG 189
               ++      +LA R  +++F       A +G ++++ SI +  +   +S  K     
Sbjct: 121 VIGFTSAPGQGGILAQREFDRRFSPHFLDWAAFG-VMTLPSIGIPLLLWYSSKRKYDTPK 180

Query: 190 SKK 193
           SKK
Sbjct: 181 SKK 182

[Close]

BLAST of Cla97C05G094480 vs. Swiss-Prot
Match: sp|P43308|SSRB_HUMAN (Translocon-associated protein subunit beta OS=Homo sapiens OX=9606 GN=SSR2 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-06
Identity = 34/112 (30.36%), Postives = 58/112 (51.79%), Query Frame = 0


Query: 10  IHLLLALLLVSSTIATSDVPFIVAHKKASLTRLKTGVERVSVSIDIYNQGSSTAYDVSLN 69
           + LL  ++L    +  ++    +   K+ L R       +++  +IYN GSS A DV L+
Sbjct: 1   MRLLSFVVLALFAVTQAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELS 60

Query: 70  DASWPGDMFDIVSGETAKSWERLDAGAHISHSFELEAKTKGMFHGSPAVITF 122
           D S+P + F IVSG     W+R+   +++SH+  L     G F+ + A IT+
Sbjct: 61  DDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY 112

[Close]

BLAST of Cla97C05G094480 vs. TAIR10
Match: AT5G14030.1 (translocon-associated protein beta (TRAPB) family protein)

HSP 1 Score: 245.7 bits (626), Expect = 2.3e-65
Identity = 124/194 (63.92%), Postives = 155/194 (79.90%), Query Frame = 0


Query: 1   MANPIQAPLIHLLLALLLVSSTIATSDVPFIVAHKKASLTRLKTGVERVSVSIDIYNQGS 60
           MA  +   LI  +   +LVS++ ATS+VPF+V HKKA+L RLK+G ERVSVS DIYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDMFDIVSGETAKSWERLDAGAHISHSFELEAKTKGMFHGSPAVIT 120
           S+AYDV+L D SW    F++V+G T+KSWERLDAG  +SHS ELEAK KG+F+G+PAV+T
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FR+PTK ALQEA STP+LPLD+LAD+PP K  +  KRLLAKYGSL+SVIS+VV FIYLVA
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           +P  + +K S KK+
Sbjct: 181 TPKSNVSKASSKKK 194

The following BLAST results are available for this feature:

BLAST of Cla97C05G094480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156478.1	2.3e-92	92.78	translocon-associated protein subunit beta [Momordica charantia]	[more]
XP_022983434.1	8.9e-92	92.27	translocon-associated protein subunit beta isoform X1 [Cucurbita maxima]	[more]
XP_022935419.1	2.6e-91	91.75	translocon-associated protein subunit beta isoform X1 [Cucurbita moschata] >XP_0...	[more]
XP_022983435.1	3.4e-91	91.75	translocon-associated protein subunit beta isoform X2 [Cucurbita maxima]	[more]
XP_022928574.1	1.7e-90	90.21	translocon-associated protein subunit beta-like isoform X1 [Cucurbita moschata] ...	[more]

BLAST of Cla97C05G094480 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BNZ1\|A0A1S3BNZ1_CUCME	3.2e-90	90.21	Translocon-associated protein subunit beta OS=Cucumis melo OX=3656 GN=LOC1034917...	[more]
tr\|A0A0A0LBA3\|A0A0A0LBA3_CUCSA	2.1e-89	91.98	Translocon-associated protein subunit beta OS=Cucumis sativus OX=3659 GN=Csa_3G5...	[more]
tr\|A0A2P6S6K9\|A0A2P6S6K9_ROSCH	2.8e-78	81.03	Translocon-associated protein subunit beta OS=Rosa chinensis OX=74649 GN=RchiOBH...	[more]
tr\|A0A067LCL0\|A0A067LCL0_JATCU	7.0e-77	78.35	Translocon-associated protein subunit beta OS=Jatropha curcas OX=180498 GN=JCGZ_...	[more]
tr\|A0A2C9UZH7\|A0A2C9UZH7_MANES	1.7e-75	77.44	Translocon-associated protein subunit beta OS=Manihot esculenta OX=3983 GN=MANES...	[more]

BLAST of Cla97C05G094480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5E9E4\|SSRB_BOVIN	1.6e-07	29.06	Translocon-associated protein subunit beta OS=Bos taurus OX=9913 GN=SSR2 PE=2 SV...	[more]
sp\|Q9CPW5\|SSRB_MOUSE	3.5e-07	30.36	Translocon-associated protein subunit beta OS=Mus musculus OX=10090 GN=Ssr2 PE=1...	[more]
sp\|P23438\|SSRB_CANLF	1.0e-06	25.68	Translocon-associated protein subunit beta OS=Canis lupus familiaris OX=9615 GN=...	[more]
sp\|P43308\|SSRB_HUMAN	1.0e-06	30.36	Translocon-associated protein subunit beta OS=Homo sapiens OX=9606 GN=SSR2 PE=1 ...	[more]

BLAST of Cla97C05G094480 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G14030.1	2.3e-65	63.92	translocon-associated protein beta (TRAPB) family protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0005783	endoplasmic reticulum

Vocabulary: **INTERPRO**
Term	Definition
IPR008856	TRAP_beta

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0034976	response to endoplasmic reticulum stress
biological_process	GO:0009627	systemic acquired resistance
biological_process	GO:0006613	cotranslational protein targeting to membrane
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G094480.1	Cla97C05G094480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008856	Translocon-associated protein subunit beta	PIRSF	PIRSF016400	TRAP-beta	coord: 5..194 e-value: 7.4E-60 score: 199.5
None	No IPR available	PFAM	PF05753	TRAP_beta	coord: 15..190 e-value: 6.1E-57 score: 191.8
None	No IPR available	PANTHER	PTHR12861	TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNIT	coord: 6..164
None	No IPR available	PANTHER	PTHR12861:SF5	SUBFAMILY NOT NAMED	coord: 6..164

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G094480	Cla003220	Watermelon (97103) v1	wmwmbB209
Cla97C05G094480	Csa3G597330	Cucumber (Chinese Long) v2	cuwmbB217
Cla97C05G094480	MELO3C014796	Melon (DHL92) v3.5.1	mewmbB435
Cla97C05G094480	ClCG05G012820	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G094480	CSPI03G26120	Wild cucumber (PI 183967)	cpiwmbB223
Cla97C05G094480	Cucsa.156120	Cucumber (Gy14) v1	cgywmbB262
Cla97C05G094480	CmaCh14G007530	Cucurbita maxima (Rimu)	cmawmbB264
Cla97C05G094480	CmaCh11G015400	Cucurbita maxima (Rimu)	cmawmbB125
Cla97C05G094480	CmoCh11G015820	Cucurbita moschata (Rifu)	cmowmbB108
Cla97C05G094480	CmoCh14G007670	Cucurbita moschata (Rifu)	cmowmbB244
Cla97C05G094480	Lsi05G004600	Bottle gourd (USVL1VR-Ls)	lsiwmbB329
Cla97C05G094480	CsGy3G024450	Cucumber (Gy14) v2	cgybwmbB208
Cla97C05G094480	MELO3C014796.2	Melon (DHL92) v3.6.1	medwmbB425
Cla97C05G094480	Carg15529	Silver-seed gourd	carwmbB0386
Cla97C05G094480	Carg09630	Silver-seed gourd	carwmbB0458
Cla97C05G094480	CsaV3_3G027640	Cucumber (Chinese Long) v3	cucwmbB219
Cla97C05G094480	Bhi01G001544	Wax gourd	wgowmbB181

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G094480	Melon (DHL92) v3.6.1	medwmbB429
Cla97C05G094480	Melon (DHL92) v3.5.1	mewmbB434