CmaCh14G007530 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G007530
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Translocon-associated protein subunit beta
Location	Cma_Chr14 : 3754298 .. 3757190 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATGTTCTCTGATTGTTCCACACTTTTGCGTACCTATTTTATCCGACGGCTCCTTCTTCTGAAAGTCCCATTTCGTCTCGGCCGATCATCTATCTCTGTGGCCTAATCCTGACGATTTCATGGCGAATCTGATTCAGGCTCGTTTGATCCATCTCCTCCTGGCTTTGCTGTTCGTCTCGTCAACGATCGCAAGCTCCGATGTCCCGTTCATTGTCGCGCACAAGAAGGCGACGCTCACTCGTCTCAAATCCGGCGTCGAACGCGTCTCGGTCTCAATCGAAATTTACAATCAGGGATCTTCGTATGTTTTGTTTAATTCGTTTAATCTGATTTCGCTTTTGTTTTCTGGATTGAGCTTTACTCATCAAGTGGCCTCTGGGATGTAGATCGAATCGTTGTTTGCGCATGCGTGATTTGATTCATATCTTTTGTTCTGGATCTAAATTGGTTTTGTTTGTACGTTCTTTTTTCTTTTTTTTTTCGCTTCCTTCTGTGCTTGTGATTGGTTTTAAGTTGTCGTCTCGGGGATATAAATGTTAGATTCAGGCGTCAGGAAAATGTTCCCAATGATACAAGATTAGATGCTTTCATGGCTGTGAAATTTGGTGCATTTGTATTTTATGAATTGTGGAAAAAGTTCGCAATGTCTTGGTTCTTGGTTTGACACAAAGATCTTGAATGCTACTATGAACTCGAACCAGGCGTAGCTCTCCTGGCTGCATCAATAAATTCTGTATTTTGGATTTTCTATGTAAGTTTCGCAAAAGGGTTGGCCAGGTCACTTTATTTTGATGAATACTACATTGTCAGTCAGAATATTCGATCAGCCATGATATTTGTTGCCATTCCAGGAGTTAGTGCCTAGATCTTGTTTCACTTTAAAAATTTGTTCATTAGGGCTGCTACATTTGCCCTGCAACGGGAAGATATAAACCGTTCTTCCAGTGATATTTTGTAGAAATTTTACAATTTGATGTAATTTTATTTGTTTATAAACGGTAGCCGTGGTGAGAGGAGGGCTGTGTGTGTGTGTGTGATGAGCATTAACTGGTATTAGAAACTGTCTAGATTAAAGTAGCAGAATTATCTACTTGTCTTGCATGATACAAATCATGAGAAGCTTGGAAGGGGATTCCCAAGATGTTTTTTGACATGTTTCCTATCTTATAATCCCTGATTTGAAGGAATCTTTTCTTTTATCCCGTTGCTCTGTTGCCTTCTATATATTTTCATTTCTAAGTAGCCTGGTTTCTGATTTTCACCCTCTTTTTGGTATTTTCACTTATAACGATTACAGGACCGCATATGATGTTACTCTGAACGATGCAAGCTGGCCAGGAGATGTCTTTGATATTGTCAGTGGCGAGACATCCAAATCGTGGGAAAGACTCGATGCGTAAGTGATATGATTTGTTTAGTATTCTTTCCTATATGCCATGGTGTACCCTCCATTGGGTTTTCGTACCACTAACACAAAAATCTGCTGTTTGACAGTGGTGGTCATTTATCTCATTCATTTGAATTAGAAGCAAAAACAAAAGGAATGTTCCATGGTTCACCTGCTGTTATCACGTTCCGTGTCCCTACGAAGTCTGCTTTACAGGTCAAATATCCTTTCAATAATGATTTTAGTCTGGTTACGTAAGGTTCCAGTCGTTTTACCGTGTTCTTCTTGATTGCTGTAGGAGGCCTTATCAACCCCAATTCTACCTTTGGATGTCCTCGCTGATAGGCCACCAGAGAAGAAGTTTGAGTGGGTAAGTTCATCCCTTATTTTTTTTTCCCTACTTCAAGCTTAATGATGTATTCTTTTCAATTTGGTTTACTGTAACAATCTTTTTGCCTTTGCATGGAATTTATCTTTCACCCGGGCGTAATTTCAACAGTTTAAGGTACGATCCATTCCGTGCTCTCAATTCTTCTATAAAACTTGAGTTGTATAAGAAAATAGAATGAATGTCTGTCTTTTTATTCATACAAGATTCTTTTTTGCTCCCTGCAGAGGCTGCTCGCTAAGTATGGCTCCCTGATCTCGGTGGTCTCCTTCGTCGTTCTGTTCGTCTATCTTGTGGCCAGCCCATCGAAATCTGCTGCAAAAGGAAGCAAGAAGAAGCGTTAATCGCTGACTGGGAAGTAGTTCTTAGCTGTGTTTTACTTTTGATCCGCCACCCAAATTGAGAATATGTTTGGTTGATATATTTGTTGGGTTAGCACAAAGGTACAGAAACTTCTTGAGTTGATAGTTTTTGTTCATCCCTAATGAGTAGTAGAGCCGGAGGAAACAGAGCTAATTATAGACACGCACGAGAGTCAGTTAAACACATGGTCCAGTAGTTGAGCTGTTTGTTTTAAAGTCATGTCGGATTTGTTCATCATATTACTCACTTGTTTCTTCTTTCCTAGACATGATTCTGAATCCCATTTTCTTTGCCTTATGTTCGTTCTGGACAAATCTGAGGGGGATCATTCTCGGGGCGGTCGATGATGACTTCCCGTTCCTATTTGCCCCTCGTCCAATTCCCCGTTAAATTGTATGATCGGTTCCCGCCCCTGTTATTGTCTTGCCCCTCGTCCAATTCCCCGTTAAATTGTATGATCAGTTCCCATCCCTATTATTGTCTTGCCCCTTGTCTATTTCCCATTAAATTGTAGGATCGTTCCCGATCTTGCCTTGCCCCTCATTTGATTCCCTGTTGAGACCGTTGGATTGGTGTGATGACAATTCCCCGTTACCTCTTCCGACGACGACAATGATTTCTTAACATTCGGACGACAATGGTGTGGTTTAGGGTTCAACTTTTCAGCAATCAATTCCTCCTTAAATTAATGCTAACAATGTGAAATTTATACTCAATTGTCGACACTTTTTTTTTAATTCCTTTTTCTATAAAT

mRNA sequence

ATATGTTCTCTGATTGTTCCACACTTTTGCGTACCTATTTTATCCGACGGCTCCTTCTTCTGAAAGTCCCATTTCGTCTCGGCCGATCATCTATCTCTGTGGCCTAATCCTGACGATTTCATGGCGAATCTGATTCAGGCTCGTTTGATCCATCTCCTCCTGGCTTTGCTGTTCGTCTCGTCAACGATCGCAAGCTCCGATGTCCCGTTCATTGTCGCGCACAAGAAGGCGACGCTCACTCGTCTCAAATCCGGCGTCGAACGCGTCTCGGTCTCAATCGAAATTTACAATCAGGGATCTTCGACCGCATATGATGTTACTCTGAACGATGCAAGCTGGCCAGGAGATGTCTTTGATATTGTCAGTGGCGAGACATCCAAATCGTGGGAAAGACTCGATGCTGGTGGTCATTTATCTCATTCATTTGAATTAGAAGCAAAAACAAAAGGAATGTTCCATGGTTCACCTGCTGTTATCACGTTCCGTGTCCCTACGAAGTCTGCTTTACAGGAGGCCTTATCAACCCCAATTCTACCTTTGGATGTCCTCGCTGATAGGCCACCAGAGAAGAAGTTTGAGTGGTTTAAGAGGCTGCTCGCTAAGTATGGCTCCCTGATCTCGGTGGTCTCCTTCGTCGTTCTGTTCGTCTATCTTGTGGCCAGCCCATCGAAATCTGCTGCAAAAGGAAGCAAGAAGAAGCGTTAATCGCTGACTGGGAAGTAGTTCTTAGCTGTGTTTTACTTTTGATCCGCCACCCAAATTGAGAATATGTTTGGTTGATATATTTGTTGGGTTAGCACAAAGGTACAGAAACTTCTTGAGTTGATAGTTTTTGTTCATCCCTAATGAGTAGTAGAGCCGGAGGAAACAGAGCTAATTATAGACACGCACGAGAGTCAGTTAAACACATGGTCCAGTAGTTGAGCTGTTTGTTTTAAAGTCATGTCGGATTTGTTCATCATATTACTCACTTGTTTCTTCTTTCCTAGACATGATTCTGAATCCCATTTTCTTTGCCTTATGTTCGTTCTGGACAAATCTGAGGGGGATCATTCTCGGGGCGGTCGATGATGACTTCCCGTTCCTATTTGCCCCTCGTCCAATTCCCCGTTAAATTGTATGATCGGTTCCCGCCCCTGTTATTGTCTTGCCCCTCGTCCAATTCCCCGTTAAATTGTATGATCAGTTCCCATCCCTATTATTGTCTTGCCCCTTGTCTATTTCCCATTAAATTGTAGGATCGTTCCCGATCTTGCCTTGCCCCTCATTTGATTCCCTGTTGAGACCGTTGGATTGGTGTGATGACAATTCCCCGTTACCTCTTCCGACGACGACAATGATTTCTTAACATTCGGACGACAATGGTGTGGTTTAGGGTTCAACTTTTCAGCAATCAATTCCTCCTTAAATTAATGCTAACAATGTGAAATTTATACTCAATTGTCGACACTTTTTTTTTAATTCCTTTTTCTATAAAT

Coding sequence (CDS)

ATGGCGAATCTGATTCAGGCTCGTTTGATCCATCTCCTCCTGGCTTTGCTGTTCGTCTCGTCAACGATCGCAAGCTCCGATGTCCCGTTCATTGTCGCGCACAAGAAGGCGACGCTCACTCGTCTCAAATCCGGCGTCGAACGCGTCTCGGTCTCAATCGAAATTTACAATCAGGGATCTTCGACCGCATATGATGTTACTCTGAACGATGCAAGCTGGCCAGGAGATGTCTTTGATATTGTCAGTGGCGAGACATCCAAATCGTGGGAAAGACTCGATGCTGGTGGTCATTTATCTCATTCATTTGAATTAGAAGCAAAAACAAAAGGAATGTTCCATGGTTCACCTGCTGTTATCACGTTCCGTGTCCCTACGAAGTCTGCTTTACAGGAGGCCTTATCAACCCCAATTCTACCTTTGGATGTCCTCGCTGATAGGCCACCAGAGAAGAAGTTTGAGTGGTTTAAGAGGCTGCTCGCTAAGTATGGCTCCCTGATCTCGGTGGTCTCCTTCGTCGTTCTGTTCGTCTATCTTGTGGCCAGCCCATCGAAATCTGCTGCAAAAGGAAGCAAGAAGAAGCGTTAA

Protein sequence

MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVASPSKSAAKGSKKKR

Homology

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BLAST of CmaCh14G007530 vs. Swiss-Prot
Match: SSRB_BOVIN (Translocon-associated protein subunit beta OS=Bos taurus GN=SSR2 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.5e-07
Identity = 34/117 (29.06%), Postives = 58/117 (49.57%), Query Frame = 1


Query: 36  KATLTRLKSGVERVSVSIEIYNQGSSTAYDVTLNDASWPGDVFDIVSGETSKSWERLDAG 95
           K+ L R       +++   IYN GSS A DV L+D S+P + F IVSG  +  W+R+   
Sbjct: 27  KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query: 96  GHLSHSFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKF 153
            ++SH+  L     G F+ + A +T+       +    ++      +LA R  +++F
Sbjct: 87  SNVSHTVVLRPLKAGYFNFTSATVTYLAQEDGPVVIGFTSAPGQGGILAQREFDRRF 143

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BLAST of CmaCh14G007530 vs. Swiss-Prot
Match: SSRB_CANLF (Translocon-associated protein subunit beta OS=Canis lupus familiaris GN=SSR2 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-06
Identity = 37/143 (25.87%), Postives = 69/143 (48.25%), Query Frame = 1


Query: 10  IHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTLN 69
           + LL ++L     ++ ++    +   K+ L R       +++   IYN GSS A DV L+
Sbjct: 1   MRLLASVLLALFAVSHAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELS 60

Query: 70  DASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKSAL 129
           D S+P + F IVSG  +  W+R+    ++SH+  L     G F+ + A +T+       +
Sbjct: 61  DDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTYLAQEDGPV 120

Query: 130 QEALSTPILPLDVLADRPPEKKF 153
               ++      +LA R  +++F
Sbjct: 121 VIGFTSAPGQGGILAQREFDRRF 143

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BLAST of CmaCh14G007530 vs. Swiss-Prot
Match: SSRB_MOUSE (Translocon-associated protein subunit beta OS=Mus musculus GN=Ssr2 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.3e-06
Identity = 37/110 (33.64%), Postives = 57/110 (51.82%), Query Frame = 1


Query: 12  LLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTLNDA 71
           ++LALL VS     + +       K+ L R       +++   IYN GSS A DV L+D 
Sbjct: 7   VVLALLAVSQAEEGARL----LASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDD 66

Query: 72  SWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITF 122
           S+P + F IVSG  +  W+R+    ++SH+  L     G F+ + A IT+
Sbjct: 67  SFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY 112

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BLAST of CmaCh14G007530 vs. Swiss-Prot
Match: SSRB_HUMAN (Translocon-associated protein subunit beta OS=Homo sapiens GN=SSR2 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.9e-06
Identity = 35/114 (30.70%), Postives = 58/114 (50.88%), Query Frame = 1


Query: 8   RLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVT 67
           RL+  ++  LF    +  ++    +   K+ L R       +++   IYN GSS A DV 
Sbjct: 2   RLLSFVVLALFA---VTQAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVE 61

Query: 68  LNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITF 122
           L+D S+P + F IVSG  +  W+R+    ++SH+  L     G F+ + A IT+
Sbjct: 62  LSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY 112

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BLAST of CmaCh14G007530 vs. TrEMBL
Match: A0A0A0LBA3_CUCSA (Translocon-associated protein subunit beta OS=Cucumis sativus GN=Csa_3G597330 PE=3 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 1.4e-87
Identity = 168/186 (90.32%), Postives = 180/186 (96.77%), Query Frame = 1


Query: 9   LIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTL 68
           +IHLL A LF+SSTIA+SDVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGSSTAYDV+L
Sbjct: 5   MIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSL 64

Query: 69  NDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKSA 128
           NDASWPGD+FDIVSGETS SWERLDAGGH+SHSFELEAK++GMFHGSPAVITFRVPTKSA
Sbjct: 65  NDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSRGMFHGSPAVITFRVPTKSA 124

Query: 129 LQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVASPSKSAAK 188
           LQEALSTPILPLDVLADRPPEKKFEW KRLLAKYGSLISVVS +VLF+YLVASPSKSAAK
Sbjct: 125 LQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIYLVASPSKSAAK 184

Query: 189 GSKKKR 195
           GSKKKR
Sbjct: 185 GSKKKR 190

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BLAST of CmaCh14G007530 vs. TrEMBL
Match: A0A067LCL0_JATCU (Translocon-associated protein subunit beta OS=Jatropha curcas GN=JCGZ_26847 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 6.1e-75
Identity = 150/194 (77.32%), Postives = 171/194 (88.14%), Query Frame = 1


Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MAN +   LI LL+AL  +SS++ASSDVPFIVAHKKATL RLKSG ERVSVS++IYNQG+
Sbjct: 1   MANPVVKPLISLLVALFLISSSLASSDVPFIVAHKKATLNRLKSGAERVSVSVDIYNQGT 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDV+L D  WP D+FD++SG TSKSWERLDAGG LSHSFELE K K +F+GSPA+IT
Sbjct: 61  STAYDVSLVDKDWPEDLFDVISGNTSKSWERLDAGGILSHSFELEGKVKAIFYGSPALIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FRVPTK+ALQEALSTPI PLDVLA+RPPEKKFEW KRLLAKYGSLISV+S +VLF+YLVA
Sbjct: 121 FRVPTKAALQEALSTPIQPLDVLAERPPEKKFEWAKRLLAKYGSLISVISIMVLFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPS SAAK SKK+R
Sbjct: 181 SPS-SAAKASKKRR 193

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BLAST of CmaCh14G007530 vs. TrEMBL
Match: V7CWK7_PHAVU (Translocon-associated protein subunit beta OS=Phaseolus vulgaris GN=PHAVU_001G087200g PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.5e-73
Identity = 147/194 (75.77%), Postives = 168/194 (86.60%), Query Frame = 1


Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MA+ I   LI   L    + S+ ASSDVPFIV+HKKA+L RLKSG ERVSV+I+IYNQG+
Sbjct: 1   MADPISRTLIAFALLASLLLSSHASSDVPFIVSHKKASLNRLKSGAERVSVTIDIYNQGT 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDV+L+D SWP D F++++G+TSKSWERLDAGG LSH+FELEAK+KG+F G PAVI 
Sbjct: 61  STAYDVSLSDDSWPSDAFEVITGKTSKSWERLDAGGILSHTFELEAKSKGLFAGEPAVIK 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FRVPTK+ALQEA STPILPLDVLADRPPEKKFEW KRLLAKYGSLISVVS +VLFVYLVA
Sbjct: 121 FRVPTKAALQEAYSTPILPLDVLADRPPEKKFEWAKRLLAKYGSLISVVSIIVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKS+ KGSKKKR
Sbjct: 181 SPSKSSTKGSKKKR 194

[Close]

BLAST of CmaCh14G007530 vs. TrEMBL
Match: I1MLC3_SOYBN (Translocon-associated protein subunit beta OS=Glycine max GN=GLYMA_16G050800 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.3e-73
Identity = 148/194 (76.29%), Postives = 167/194 (86.08%), Query Frame = 1


Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MA+ I   LI   L    +  + ASSDVPFIVAHKKA+L RLKSG ERVSV+I+I+NQG+
Sbjct: 1   MADPIAKALIAFALLASLLLCSHASSDVPFIVAHKKASLNRLKSGAERVSVTIDIFNQGT 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDV+L+D SWP D FD++SG TSKSWERLDAGG LSH+FELEAK+KG+F G PAVI 
Sbjct: 61  STAYDVSLSDDSWPSDAFDVISGSTSKSWERLDAGGILSHTFELEAKSKGVFAGEPAVIK 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FRVPTKSALQEA STPILPLDVL+DRPPEKKFEW KRLLAKYGSLISV+S +VLFVYLVA
Sbjct: 121 FRVPTKSALQEAYSTPILPLDVLSDRPPEKKFEWAKRLLAKYGSLISVISIMVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKS+AKGSKKKR
Sbjct: 181 SPSKSSAKGSKKKR 194

[Close]

BLAST of CmaCh14G007530 vs. TrEMBL
Match: C6SZZ1_SOYBN (Translocon-associated protein subunit beta OS=Glycine max PE=2 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.3e-73
Identity = 148/194 (76.29%), Postives = 167/194 (86.08%), Query Frame = 1


Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MA+ I   LI   L    +  + ASSDVPFIVAHKKA+L RLKSG ERVSV+I+I+NQG+
Sbjct: 1   MADPIAKALIAFALLTSLLLCSHASSDVPFIVAHKKASLNRLKSGAERVSVTIDIFNQGT 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDV+L+D SWP D FD++SG TSKSWERLDAGG LSH+FELEAK+KG+F G PAVI 
Sbjct: 61  STAYDVSLSDDSWPSDAFDVISGSTSKSWERLDAGGILSHTFELEAKSKGVFAGEPAVIK 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FRVPTKSALQEA STPILPLDVL+DRPPEKKFEW KRLLAKYGSLISV+S +VLFVYLVA
Sbjct: 121 FRVPTKSALQEAYSTPILPLDVLSDRPPEKKFEWAKRLLAKYGSLISVISIMVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKS+AKGSKKKR
Sbjct: 181 SPSKSSAKGSKKKR 194

[Close]

BLAST of CmaCh14G007530 vs. TAIR10
Match: AT5G14030.1 (AT5G14030.1 translocon-associated protein beta (TRAPB) family protein)

HSP 1 Score: 248.1 bits (632), Expect = 4.6e-66
Identity = 125/194 (64.43%), Postives = 154/194 (79.38%), Query Frame = 1


Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MA  +   LI  +   + VS++ A+S+VPF+V HKKATL RLKSG ERVSVS +IYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           S+AYDVTL D SW    F++V+G TSKSWERLDAGG LSHS ELEAK KG+F+G+PAV+T
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FR+PTK ALQEA STP+LPLD+LAD+PP K  +  KRLLAKYGSL+SV+S VV F+YLVA
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           +P  + +K S KK+
Sbjct: 181 TPKSNVSKASSKKK 194

[Close]

BLAST of CmaCh14G007530 vs. NCBI nr
Match: gi|449455914|ref|XP_004145695.1| (PREDICTED: translocon-associated protein subunit beta [Cucumis sativus])

HSP 1 Score: 330.5 bits (846), Expect = 2.0e-87
Identity = 168/186 (90.32%), Postives = 180/186 (96.77%), Query Frame = 1


Query: 9   LIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTL 68
           +IHLL A LF+SSTIA+SDVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGSSTAYDV+L
Sbjct: 5   MIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSL 64

Query: 69  NDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKSA 128
           NDASWPGD+FDIVSGETS SWERLDAGGH+SHSFELEAK++GMFHGSPAVITFRVPTKSA
Sbjct: 65  NDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSRGMFHGSPAVITFRVPTKSA 124

Query: 129 LQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVASPSKSAAK 188
           LQEALSTPILPLDVLADRPPEKKFEW KRLLAKYGSLISVVS +VLF+YLVASPSKSAAK
Sbjct: 125 LQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIYLVASPSKSAAK 184

Query: 189 GSKKKR 195
           GSKKKR
Sbjct: 185 GSKKKR 190

[Close]

BLAST of CmaCh14G007530 vs. NCBI nr
Match: gi|659098156|ref|XP_008450004.1| (PREDICTED: translocon-associated protein subunit beta [Cucumis melo])

HSP 1 Score: 327.4 bits (838), Expect = 1.7e-86
Identity = 168/194 (86.60%), Postives = 181/194 (93.30%), Query Frame = 1


Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MA+     LI LL A LF+SSTIA+SDVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGS
Sbjct: 1   MAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDV+LNDASWPGD+FDIVSGETS SWERLDAGGH+SHSFELEAK+KGMFHGSPAV+T
Sbjct: 61  STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FRVPTKSALQEALSTPILPLDVLADRPPEKKFEW KRLL KYGSLISV+S +VLF+YLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLTKYGSLISVISIIVLFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of CmaCh14G007530 vs. NCBI nr
Match: gi|1009152038|ref|XP_015893877.1| (PREDICTED: translocon-associated protein subunit beta [Ziziphus jujuba])

HSP 1 Score: 294.7 bits (753), Expect = 1.2e-76
Identity = 157/195 (80.51%), Postives = 171/195 (87.69%), Query Frame = 1


Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MAN I   LIH LLAL  +S+ + SSDVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQG 
Sbjct: 1   MANQIPKPLIHGLLALFVLSTALGSSDVPFIVAHKKASLTRLKSGSERVSVSIDIYNQGP 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDV+L D +WP  VFD+VSG TSKSWERLDAGG L+HSFELEAK KG+FH S A+IT
Sbjct: 61  STAYDVSLTDDNWPQTVFDVVSGNTSKSWERLDAGGFLTHSFELEAKAKGIFHSSQALIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FR+PTK+ALQEA STPILPLDVLADRPPEKKFEW KRLLAKYGSLISVVS VVLFVYLVA
Sbjct: 121 FRIPTKAALQEAYSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIVVLFVYLVA 180

Query: 181 SPSKS-AAKGSKKKR 195
           +PSKS AAKGSKKKR
Sbjct: 181 TPSKSGAAKGSKKKR 195

[Close]

BLAST of CmaCh14G007530 vs. NCBI nr
Match: gi|1000980076|ref|XP_015570943.1| (PREDICTED: translocon-associated protein subunit beta [Ricinus communis])

HSP 1 Score: 290.0 bits (741), Expect = 3.0e-75
Identity = 149/184 (80.98%), Postives = 166/184 (90.22%), Query Frame = 1


Query: 12  LLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTLNDA 71
           LL+AL  +SST ASSDVPFIVAHKKATL RLKSG ERVSVSI+IYNQGSSTAYDV+L D 
Sbjct: 9   LLVALFLISSTSASSDVPFIVAHKKATLNRLKSGAERVSVSIDIYNQGSSTAYDVSLLDD 68

Query: 72  SWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKSALQE 131
            WP D+FD++SG TS+SWERLD GG LSH+FELE K KG+F+GSPAV+TFR+PTK+ALQE
Sbjct: 69  HWPQDIFDVISGNTSQSWERLDVGGILSHTFELEGKVKGLFYGSPAVVTFRIPTKAALQE 128

Query: 132 ALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVASPSK-SAAKGS 191
           A STPILPLDVLA+RPPEKKFEW KRLLAKYGSLISV+S VVLFVYLVASPSK SAAKGS
Sbjct: 129 AFSTPILPLDVLAERPPEKKFEWAKRLLAKYGSLISVISIVVLFVYLVASPSKSSAAKGS 188

Query: 192 KKKR 195
           KK+R
Sbjct: 189 KKRR 192

[Close]

BLAST of CmaCh14G007530 vs. NCBI nr
Match: gi|802564458|ref|XP_012067325.1| (PREDICTED: translocon-associated protein subunit beta [Jatropha curcas])

HSP 1 Score: 288.5 bits (737), Expect = 8.7e-75
Identity = 150/194 (77.32%), Postives = 171/194 (88.14%), Query Frame = 1


Query: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60
           MAN +   LI LL+AL  +SS++ASSDVPFIVAHKKATL RLKSG ERVSVS++IYNQG+
Sbjct: 1   MANPVVKPLISLLVALFLISSSLASSDVPFIVAHKKATLNRLKSGAERVSVSVDIYNQGT 60

Query: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120
           STAYDV+L D  WP D+FD++SG TSKSWERLDAGG LSHSFELE K K +F+GSPA+IT
Sbjct: 61  STAYDVSLVDKDWPEDLFDVISGNTSKSWERLDAGGILSHSFELEGKVKAIFYGSPALIT 120

Query: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWFKRLLAKYGSLISVVSFVVLFVYLVA 180
           FRVPTK+ALQEALSTPI PLDVLA+RPPEKKFEW KRLLAKYGSLISV+S +VLF+YLVA
Sbjct: 121 FRVPTKAALQEALSTPIQPLDVLAERPPEKKFEWAKRLLAKYGSLISVISIMVLFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPS SAAK SKK+R
Sbjct: 181 SPS-SAAKASKKRR 193

The following BLAST results are available for this feature:

BLAST of CmaCh14G007530 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SSRB_BOVIN	3.5e-07	29.06	Translocon-associated protein subunit beta OS=Bos taurus GN=SSR2 PE=2 SV=1	[more]
SSRB_CANLF	1.0e-06	25.87	Translocon-associated protein subunit beta OS=Canis lupus familiaris GN=SSR2 PE=...	[more]
SSRB_MOUSE	1.3e-06	33.64	Translocon-associated protein subunit beta OS=Mus musculus GN=Ssr2 PE=1 SV=1	[more]
SSRB_HUMAN	2.9e-06	30.70	Translocon-associated protein subunit beta OS=Homo sapiens GN=SSR2 PE=1 SV=1	[more]

BLAST of CmaCh14G007530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBA3_CUCSA	1.4e-87	90.32	Translocon-associated protein subunit beta OS=Cucumis sativus GN=Csa_3G597330 PE...	[more]
A0A067LCL0_JATCU	6.1e-75	77.32	Translocon-associated protein subunit beta OS=Jatropha curcas GN=JCGZ_26847 PE=3...	[more]
V7CWK7_PHAVU	2.5e-73	75.77	Translocon-associated protein subunit beta OS=Phaseolus vulgaris GN=PHAVU_001G08...	[more]
I1MLC3_SOYBN	3.3e-73	76.29	Translocon-associated protein subunit beta OS=Glycine max GN=GLYMA_16G050800 PE=...	[more]
C6SZZ1_SOYBN	3.3e-73	76.29	Translocon-associated protein subunit beta OS=Glycine max PE=2 SV=1	[more]

BLAST of CmaCh14G007530 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G14030.1	4.6e-66	64.43	translocon-associated protein beta (TRAPB) family protein	[more]

BLAST of CmaCh14G007530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455914\|ref\|XP_004145695.1\|	2.0e-87	90.32	PREDICTED: translocon-associated protein subunit beta [Cucumis sativus]	[more]
gi\|659098156\|ref\|XP_008450004.1\|	1.7e-86	86.60	PREDICTED: translocon-associated protein subunit beta [Cucumis melo]	[more]
gi\|1009152038\|ref\|XP_015893877.1\|	1.2e-76	80.51	PREDICTED: translocon-associated protein subunit beta [Ziziphus jujuba]	[more]
gi\|1000980076\|ref\|XP_015570943.1\|	3.0e-75	80.98	PREDICTED: translocon-associated protein subunit beta [Ricinus communis]	[more]
gi\|802564458\|ref\|XP_012067325.1\|	8.7e-75	77.32	PREDICTED: translocon-associated protein subunit beta [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008856	TRAP_beta

Vocabulary: **Cellular Component**
Term	Definition
GO:0005783	endoplasmic reticulum
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006613	cotranslational protein targeting to membrane
biological_process	GO:0008150	biological_process
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G007530.1	CmaCh14G007530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008856	Translocon-associated protein subunit beta	PIR	PIRSF016400	TRAP-beta	coord: 6..194 score: 1.0
IPR008856	Translocon-associated protein subunit beta	PANTHER	PTHR12861	TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNIT	coord: 2..194 score: 1.8
None	No IPR available	PANTHER	PTHR12861:SF4	SUBFAMILY NOT NAMED	coord: 2..194 score: 1.8
None	No IPR available	PFAM	PF05753	TRAP_beta	coord: 15..190 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh14G007530	Cucsa.156120	Cucumber (Gy14) v1	cgycmaB0432
CmaCh14G007530	Cla003220	Watermelon (97103) v1	cmawmB239
CmaCh14G007530	Csa3G597330	Cucumber (Chinese Long) v2	cmacuB247
CmaCh14G007530	MELO3C014796	Melon (DHL92) v3.5.1	cmameB240
CmaCh14G007530	ClCG05G012820	Watermelon (Charleston Gray)	cmawcgB234
CmaCh14G007530	CSPI03G26120	Wild cucumber (PI 183967)	cmacpiB249
CmaCh14G007530	CmoCh14G007670	Cucurbita moschata (Rifu)	cmacmoB244
CmaCh14G007530	CmoCh11G015820	Cucurbita moschata (Rifu)	cmacmoB243
CmaCh14G007530	Lsi05G004600	Bottle gourd (USVL1VR-Ls)	cmalsiB249
CmaCh14G007530	Cp4.1LG03g06790	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G007530	Cp4.1LG04g06200	Cucurbita pepo (Zucchini)	cmacpeB289
CmaCh14G007530	MELO3C014796.2	Melon (DHL92) v3.6.1	cmamedB271
CmaCh14G007530	CsaV3_3G027640	Cucumber (Chinese Long) v3	cmacucB0286
CmaCh14G007530	Cla97C05G094480	Watermelon (97103) v2	cmawmbB264
CmaCh14G007530	Bhi01G001544	Wax gourd	cmawgoB0339
CmaCh14G007530	CsGy3G024450	Cucumber (Gy14) v2	cgybcmaB313
CmaCh14G007530	Carg09630	Silver-seed gourd	carcmaB0607
CmaCh14G007530	Carg15529	Silver-seed gourd	carcmaB0521

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh14G007530	CmaCh11G015400	Cucurbita maxima (Rimu)	cmacmaB131

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G007530	Melon (DHL92) v3.6.1	cmamedB276