Cp4.1LG03g06790 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g06790
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTranslocon-associated protein subunit beta
LocationCp4.1LG03 : 3873817 .. 3876595 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAGGTTACCCCTGTTGAAATTTCGTGGGGTTCTAAAAAATCATCATATGTTCTCTGATTGTTCCACACTTTTGCGTACCTATTTTATCCGACGGCTCCTTCTTCTCAAAGTCCCATTTCGTCTCCGCCGATCATCTCTGTGGCCCTAATCCCGACGATTTCATGGCGAATCTGATCCATCTCCTCCTGGCTTTTCTGTTCGTCTCGTCAACGATCGCAAGCTCCGATGTCCCGTTCATTGTCGCGCACAAGAAGGCGACGCTCACTCGTCTCAAATCCGGCGTCGAACGCGTCTCGGTCTCAATCGAAATTTACAATCAGGGATCTTCGTATGTTTTGTTTAATTTTTTTAATCTGATTTCGCTTTTGTTTTCTGGAATGAGCTTTACTCATCAAGTGGCCTCTGAGATGTAGATCGAATCGTTCTTTGCGCATGCGTGGTTTGATTTATATTTTTTGTTCTGGATCTAAATTGGTTTTGTTTGTACTTTGTTCTTTTCTTTTTTTTTTCGCTTCCTTCTGTTCATGTGATTGGTTTTAAGTTGTCGTCTCGGGGATATAAATGTTAGATTCAGGCGTCAGGAAAATGTTCCCAATTGATAGAAGATTAGATGCTTTCATAGCTGTGAAATTTGGTGCATTTTTATTTTATGAATTGTGGAAAAGTTCGTAATGTCTTGGTTCTTGGTTTGACACAAAGATCTTGAATGCTATTATGAACTGGAACCAGGCGTAGCTCTCCTAGCTGCATCAATAAATTCTGTATTTTGGATTTTCTATGTAAATTTCGCAAAAGGGTTGAACAGGTCACTTTTTTTTTATGATTACTACATTGACAGTCAGAATATTCGATCAGCCATGATATTCGTTGCCATTCCAGGAGTTAGTGCCTAGATCTTGTTTCACATTAAAAAAAAATTCATTAGGGCTGCCATTTGCCCTGCAACGGGAAGATATAAACTGTTCTTCCAGTGATATTTTGTAGAAACTTTACAATTTGATGTAATTCTATTTGTTTATAAACGGTAGCCGTGGTGAGAGGAGGGCTGTGTGTGTGTGATGAGCATTAACTGGCATTAGAAACTGTCTAGATCAAAGTAGCAGAATTATCTACTTGTCTTGCATGATACATATCATGAGAAGCTTGGAAGGGGATTCCCGAGATGTTTTTTGACATGTTTCCTATCTTATAATCCCTGATTTGAGGGAATCTTTTCTTTTATCCCGTTGCTCTGTTGCCTTTTATATATTTTCATTTCTAAGTAGCCTGGTTTCTAATCTTCACCCTCTTTTTGGTATTTTCACTTATAACGATTACAGGACCGCATATGATGTTACTCTGAACGATGCAAGCTGGCCAGGAGATGTCTTTGATATTGTCAGTGGCGAGACATCCAAATCGTGGGAAAGACTCGATGCGTAAGTGATATGATTTGTTTAGTATTCTTTCCTATATGCCATGGTACCCTCCATTGGGTTTTCGTGCCACTAACACACAGATCTGCTGTTTGACAGTGGTGGTCATTTATCTCATTCATTTGAATTAGAAGCAAAAACAAAAGGAATGTTCCATGGTTCACCTGCTGTTATCACGTTCCGTGTCCCTACGAAGTCTGCTTTACAGGTCAAATATCCTTTCAATAATGATTTTAGTCTGGTTACGTAAGGTTCCAGTCGTTTTACCGTGTTCTTCTTGATTGCTGTAGGAGGCCTTATCAACCCCAATTCTACCTTTGGATGTCCTCGCTGATAGGCCACCAGAGAAGAAGTTTGAGTGGGTAAGTTCATCCCTTATTTTTCTCCCCACTTCAAGCTTAATGATGTATTCTTTTCAAATTGGTTTAATGTAACAATCTTTTTGCCTTTGCATGGAATTTATCTTTCACCGGGGCGTAATTTCAACAGGTCAAGGTACGATCCATTCCGTGCTCTCCATTCTTCTATAAAACTTAAAGTTGTATAAGAAAATAGAATGAATGTCTGTCTTTTTATTCACACAAGATTCCTTTTTCCTCCCTGCAGAGGCTGCTCGCTAAGTATGGCTCCCTGATCTCGGTGGTCTCCTTTGTCGTTCTGTTCGTCTATCTTGTGGCCAGCCCATCGAAATCTGCTGCAAAAGGAAGCAAGAAGAAGCGTTAATCGTTAATCGCTGACCGGGAAGTAGTTCTTAGCTGTGTTTTACTTTTGATCCGCCACCCAAATTGAGGATATGTTTGGTTGATATATTTGTTGGGTTAGCACAAAGGTACAGAAACTTTTTGAGTTGATAGTTTTTGTTCATCCATCCCTAATGAGTAGTAGAGCCGGAGGAAACAGAGCTAATTATAGACACGCACGTGAGTCAGTTAAACACATGGTCCAGTAGTTGAGCTGTTTGTTTTTAAGTCATGTCGGATTTGTTCATCATATTACTCACTTGTTTCTTCTTTCTTAGACATGATTCTGATTCCCATTTTCTTTGCCTTGTGTTCGTTCTGGACAAATCTGAGGGGGATCATTCTCGGGGCGGTCGATGATGACTTCCCGTTCCTATTTTTCCCCTCGTCCAATTCCCCGTTAAATTGTAGAATCGGTCCCGATCTTGTCTTGCCCCTCATTTGATTCCCTGTTGAGACCGTTGGATTGGTGTGATGACAATTCCCCGTTACCTCTTCCGACGACGACAATGATTTCTTAACAATCGGACGACGTTGGTGTGGTTTAGGGTTCAACTTTTCTAATTTAAACTCAATTTCATCGTCGGTGACCGTCGACACTTTCTTTTAATTCCTTTTT

mRNA sequence

ATGACTAGGTTACCCCTGTTGAAATTTCGTGGGGTTCTAAAAAATCATCATATGTTCTCTGATTGTTCCACACTTTTGCGTACCTATTTTATCCGACGGCTCCTTCTTCTCAAAGTCCCATTTCGTCTCCGCCGATCATCTCTGTGGCCCTAATCCCGACGATTTCATGGCGAATCTGATCCATCTCCTCCTGGCTTTTCTGTTCGTCTCGTCAACGATCGCAAGCTCCGATGTCCCGTTCATTGTCGCGCACAAGAAGGCGACGCTCACTCGTCTCAAATCCGGCGTCGAACGCGTCTCGGTCTCAATCGAAATTTACAATCAGGGATCTTCGACCGCATATGATGTTACTCTGAACGATGCAAGCTGGCCAGGAGATGTCTTTGATATTGTCAGTGGCGAGACATCCAAATCGTGGGAAAGACTCGATGCTGGTGGTCATTTATCTCATTCATTTGAATTAGAAGCAAAAACAAAAGGAATGTTCCATGGTTCACCTGCTGTTATCACGTTCCGTGTCCCTACGAAGTCTGCTTTACAGGAGGCCTTATCAACCCCAATTCTACCTTTGGATGTCCTCGCTGATAGGCCACCAGAGAAGAAGTTTGAGTGGAGGCTGCTCGCTAAGTATGGCTCCCTGATCTCGGTGGTCTCCTTTGTCGTTCTGTTCGTCTATCTTGTGGCCAGCCCATCGAAATCTGCTGCAAAAGGAAGCAAGAAGAAGCGTTAATCGTTAATCGCTGACCGGGAAGTAGTTCTTAGCTGTGTTTTACTTTTGATCCGCCACCCAAATTGAGGATATGTTTGGTTGATATATTTGTTGGGTTAGCACAAAGGTACAGAAACTTTTTGAGTTGATAGTTTTTGTTCATCCATCCCTAATGAGTAGTAGAGCCGGAGGAAACAGAGCTAATTATAGACACGCACGTGAGTCAGTTAAACACATGGTCCAGTAGTTGAGCTGTTTGTTTTTAAGTCATGTCGGATTTGTTCATCATATTACTCACTTGTTTCTTCTTTCTTAGACATGATTCTGATTCCCATTTTCTTTGCCTTGTGTTCGTTCTGGACAAATCTGAGGGGGATCATTCTCGGGGCGGTCGATGATGACTTCCCGTTCCTATTTTTCCCCTCGTCCAATTCCCCGTTAAATTGTAGAATCGGTCCCGATCTTGTCTTGCCCCTCATTTGATTCCCTGTTGAGACCGTTGGATTGGTGTGATGACAATTCCCCGTTACCTCTTCCGACGACGACAATGATTTCTTAACAATCGGACGACGTTGGTGTGGTTTAGGGTTCAACTTTTCTAATTTAAACTCAATTTCATCGTCGGTGACCGTCGACACTTTCTTTTAATTCCTTTTT

Coding sequence (CDS)

ATGGCGAATCTGATCCATCTCCTCCTGGCTTTTCTGTTCGTCTCGTCAACGATCGCAAGCTCCGATGTCCCGTTCATTGTCGCGCACAAGAAGGCGACGCTCACTCGTCTCAAATCCGGCGTCGAACGCGTCTCGGTCTCAATCGAAATTTACAATCAGGGATCTTCGACCGCATATGATGTTACTCTGAACGATGCAAGCTGGCCAGGAGATGTCTTTGATATTGTCAGTGGCGAGACATCCAAATCGTGGGAAAGACTCGATGCTGGTGGTCATTTATCTCATTCATTTGAATTAGAAGCAAAAACAAAAGGAATGTTCCATGGTTCACCTGCTGTTATCACGTTCCGTGTCCCTACGAAGTCTGCTTTACAGGAGGCCTTATCAACCCCAATTCTACCTTTGGATGTCCTCGCTGATAGGCCACCAGAGAAGAAGTTTGAGTGGAGGCTGCTCGCTAAGTATGGCTCCCTGATCTCGGTGGTCTCCTTTGTCGTTCTGTTCGTCTATCTTGTGGCCAGCCCATCGAAATCTGCTGCAAAAGGAAGCAAGAAGAAGCGTTAA

Protein sequence

MANLIHLLLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFEWRLLAKYGSLISVVSFVVLFVYLVASPSKSAAKGSKKKR
Homology
[Close]
BLAST of Cp4.1LG03g06790 vs. Swiss-Prot
Match: SSRB_HUMAN (Translocon-associated protein subunit beta OS=Homo sapiens GN=SSR2 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.4e-07
Identity = 31/86 (36.05%), Postives = 47/86 (54.65%), Query Frame = 1 

Query: 31  KATLTRLKSGVERVSVSIEIYNQGSSTAYDVTLNDASWPGDVFDIVSGETSKSWERLDAG 90
           K+ L R       +++   IYN GSS A DV L+D S+P + F IVSG  +  W+R+   
Sbjct: 27  KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query: 91  GHLSHSFELEAKTKGMFHGSPAVITF 117
            ++SH+  L     G F+ + A IT+
Sbjct: 87  SNVSHTVVLRPLKAGYFNFTSATITY 112

[Close]
BLAST of Cp4.1LG03g06790 vs. Swiss-Prot
Match: SSRB_MOUSE (Translocon-associated protein subunit beta OS=Mus musculus GN=Ssr2 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.4e-07
Identity = 31/86 (36.05%), Postives = 47/86 (54.65%), Query Frame = 1 

Query: 31  KATLTRLKSGVERVSVSIEIYNQGSSTAYDVTLNDASWPGDVFDIVSGETSKSWERLDAG 90
           K+ L R       +++   IYN GSS A DV L+D S+P + F IVSG  +  W+R+   
Sbjct: 27  KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query: 91  GHLSHSFELEAKTKGMFHGSPAVITF 117
            ++SH+  L     G F+ + A IT+
Sbjct: 87  SNVSHTVVLRPLKAGYFNFTSATITY 112

[Close]
BLAST of Cp4.1LG03g06790 vs. Swiss-Prot
Match: SSRB_BOVIN (Translocon-associated protein subunit beta OS=Bos taurus GN=SSR2 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.4e-07
Identity = 34/117 (29.06%), Postives = 58/117 (49.57%), Query Frame = 1 

Query: 31  KATLTRLKSGVERVSVSIEIYNQGSSTAYDVTLNDASWPGDVFDIVSGETSKSWERLDAG 90
           K+ L R       +++   IYN GSS A DV L+D S+P + F IVSG  +  W+R+   
Sbjct: 27  KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query: 91  GHLSHSFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKF 148
            ++SH+  L     G F+ + A +T+       +    ++      +LA R  +++F
Sbjct: 87  SNVSHTVVLRPLKAGYFNFTSATVTYLAQEDGPVVIGFTSAPGQGGILAQREFDRRF 143

[Close]
BLAST of Cp4.1LG03g06790 vs. Swiss-Prot
Match: SSRB_CANLF (Translocon-associated protein subunit beta OS=Canis lupus familiaris GN=SSR2 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.7e-06
Identity = 46/183 (25.14%), Postives = 85/183 (46.45%), Query Frame = 1 

Query: 5   IHLLLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTLN 64
           + LL + L     ++ ++    +   K+ L R       +++   IYN GSS A DV L+
Sbjct: 1   MRLLASVLLALFAVSHAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELS 60

Query: 65  DASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKSAL 124
           D S+P + F IVSG  +  W+R+    ++SH+  L     G F+ + A +T+       +
Sbjct: 61  DDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTYLAQEDGPV 120

Query: 125 QEALSTPILPLDVLADRPPEKKFEWRLL--AKYGSLISVVSFVVLFVYLVASPSKSAAKG 184
               ++      +LA R  +++F    L  A +G ++++ S  +  +   +S  K     
Sbjct: 121 VIGFTSAPGQGGILAQREFDRRFSPHFLDWAAFG-VMTLPSIGIPLLLWYSSKRKYDTPK 180

Query: 185 SKK 186
           SKK
Sbjct: 181 SKK 182

[Close]
BLAST of Cp4.1LG03g06790 vs. TrEMBL
Match: A0A0A0LBA3_CUCSA (Translocon-associated protein subunit beta OS=Cucumis sativus GN=Csa_3G597330 PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.5e-86
Identity = 168/186 (90.32%), Postives = 180/186 (96.77%), Query Frame = 1 

Query: 4   LIHLLLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTL 63
           +IHLL AFLF+SSTIA+SDVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGSSTAYDV+L
Sbjct: 5   MIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSL 64

Query: 64  NDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKSA 123
           NDASWPGD+FDIVSGETS SWERLDAGGH+SHSFELEAK++GMFHGSPAVITFRVPTKSA
Sbjct: 65  NDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSRGMFHGSPAVITFRVPTKSA 124

Query: 124 LQEALSTPILPLDVLADRPPEKKFEW--RLLAKYGSLISVVSFVVLFVYLVASPSKSAAK 183
           LQEALSTPILPLDVLADRPPEKKFEW  RLLAKYGSLISVVS +VLF+YLVASPSKSAAK
Sbjct: 125 LQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIYLVASPSKSAAK 184

Query: 184 GSKKKR 188
           GSKKKR
Sbjct: 185 GSKKKR 190

[Close]
BLAST of Cp4.1LG03g06790 vs. TrEMBL
Match: B9RH13_RICCO (Translocon-associated protein, beta subunit, putative OS=Ricinus communis GN=RCOM_1445980 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.9e-74
Identity = 146/181 (80.66%), Postives = 163/181 (90.06%), Query Frame = 1 

Query: 7   LLLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTLNDA 66
           LL+A   +SST ASSDVPFIVAHKKATL RLKSG ERVSVSI+IYNQGSSTAYDV+L D 
Sbjct: 9   LLVALFLISSTSASSDVPFIVAHKKATLNRLKSGAERVSVSIDIYNQGSSTAYDVSLLDD 68

Query: 67  SWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKSALQE 126
            WP D+FD++SG TS+SWERLD GG LSH+FELE K KG+F+GSPAV+TFR+PTK+ALQE
Sbjct: 69  HWPQDIFDVISGNTSQSWERLDVGGILSHTFELEGKVKGLFYGSPAVVTFRIPTKAALQE 128

Query: 127 ALSTPILPLDVLADRPPEKKFEWRLLAKYGSLISVVSFVVLFVYLVASPSK-SAAKGSKK 186
           A STPILPLDVLA+RPPEKKFEWRLLAKYGSLISV+S VVLFVYLVASPSK SAAKGSKK
Sbjct: 129 AFSTPILPLDVLAERPPEKKFEWRLLAKYGSLISVISIVVLFVYLVASPSKSSAAKGSKK 188

[Close]
BLAST of Cp4.1LG03g06790 vs. TrEMBL
Match: A0A0B2NVH3_GLYSO (Translocon-associated protein subunit beta OS=Glycine soja GN=glysoja_034757 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.2e-73
Identity = 145/185 (78.38%), Postives = 166/185 (89.73%), Query Frame = 1 

Query: 7   LLLAFLFVSSTI----ASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVT 66
           +L+AF  ++S +    ASSDVPFIVAHKKA+L RLKSG ERVSV+I+I+NQG+STAYDV+
Sbjct: 8   VLIAFALLASLLLCSHASSDVPFIVAHKKASLNRLKSGAERVSVTIDIFNQGTSTAYDVS 67

Query: 67  LNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKS 126
           L+D SWP D FD++SG TSKSWERLDAGG LSH+FELEAK+KG+F G PAVI FRVPTKS
Sbjct: 68  LSDDSWPSDAFDVISGSTSKSWERLDAGGILSHTFELEAKSKGVFAGEPAVIKFRVPTKS 127

Query: 127 ALQEALSTPILPLDVLADRPPEKKFEWRLLAKYGSLISVVSFVVLFVYLVASPSKSAAKG 186
           ALQEA STPILPLDVL+DRPPEKKFEWRLLAKYGSLISV+S +VLFVYLVASPSKS+AKG
Sbjct: 128 ALQEAYSTPILPLDVLSDRPPEKKFEWRLLAKYGSLISVISIMVLFVYLVASPSKSSAKG 187

Query: 187 SKKKR 188
           SKKKR
Sbjct: 188 SKKKR 192

[Close]
BLAST of Cp4.1LG03g06790 vs. TrEMBL
Match: A0A151T973_CAJCA (Translocon-associated protein subunit beta OS=Cajanus cajan GN=KK1_018155 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.2e-73
Identity = 144/180 (80.00%), Postives = 162/180 (90.00%), Query Frame = 1 

Query: 8   LLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTLNDAS 67
           LLA LF+SS  ASSDVPFIV HKKATL R+KSG ERVSV+++IYNQG+STAYDV+L D +
Sbjct: 14  LLASLFLSSH-ASSDVPFIVVHKKATLNRIKSGAERVSVTVDIYNQGTSTAYDVSLADDN 73

Query: 68  WPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKSALQEA 127
           WP D FD++SG TSKSWERLDAGG LSH+FEL+AKTKG+F   PAV+ FRVPTKSALQEA
Sbjct: 74  WPSDAFDVISGSTSKSWERLDAGGILSHTFELDAKTKGVFSSDPAVVKFRVPTKSALQEA 133

Query: 128 LSTPILPLDVLADRPPEKKFEWRLLAKYGSLISVVSFVVLFVYLVASPSKSAAKGSKKKR 187
            STPI+PLDVLADRPPEKKFEWRLLAKYGSLISV+S VVLFVYLVA+PSKS+AKGSKKKR
Sbjct: 134 YSTPIIPLDVLADRPPEKKFEWRLLAKYGSLISVISIVVLFVYLVATPSKSSAKGSKKKR 192

[Close]
BLAST of Cp4.1LG03g06790 vs. TrEMBL
Match: W9R8U7_9ROSA (Translocon-associated protein subunit beta OS=Morus notabilis GN=L484_008714 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.2e-73
Identity = 150/187 (80.21%), Postives = 167/187 (89.30%), Query Frame = 1 

Query: 3   NLIHLLLAFLFVSSTI-ASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDV 62
           +LI  LLA   VS  + AS DVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGS TAYDV
Sbjct: 8   SLICGLLALFMVSLALGASDDVPFIVAHKKASLTRLKSGSERVSVSIDIYNQGSLTAYDV 67

Query: 63  TLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTK 122
           +LND SWP ++FD+VSG  SKSWERLDAGG LSHSFELEAK KG+F+G+PAVITFR+PTK
Sbjct: 68  SLNDDSWPQEIFDVVSGNISKSWERLDAGGILSHSFELEAKAKGLFNGAPAVITFRIPTK 127

Query: 123 SALQEALSTPILPLDVLADRPPEKKFEWRLLAKYGSLISVVSFVVLFVYLVASPSKS-AA 182
           +ALQEA STPI+PLDVLADRPPEKKFEWRLLAKYGSLISV++ VVLFVYLVA+PSKS AA
Sbjct: 128 AALQEAYSTPIIPLDVLADRPPEKKFEWRLLAKYGSLISVITIVVLFVYLVATPSKSGAA 187

Query: 183 KGSKKKR 188
           KGSKKKR
Sbjct: 188 KGSKKKR 194

[Close]
BLAST of Cp4.1LG03g06790 vs. TAIR10
Match: AT5G14030.1 (AT5G14030.1 translocon-associated protein beta (TRAPB) family protein)

HSP 1 Score: 243.8 bits (621), Expect = 8.3e-65
Identity = 123/186 (66.13%), Postives = 151/186 (81.18%), Query Frame = 1 

Query: 4   LIHLLLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTL 63
           LI  +  F+ VS++ A+S+VPF+V HKKATL RLKSG ERVSVS +IYNQGSS+AYDVTL
Sbjct: 9   LISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGSSSAYDVTL 68

Query: 64  NDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKSA 123
            D SW    F++V+G TSKSWERLDAGG LSHS ELEAK KG+F+G+PAV+TFR+PTK A
Sbjct: 69  TDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVTFRIPTKPA 128

Query: 124 LQEALSTPILPLDVLADRPPEKKFE--WRLLAKYGSLISVVSFVVLFVYLVASPSKSAAK 183
           LQEA STP+LPLD+LAD+PP K  +   RLLAKYGSL+SV+S VV F+YLVA+P  + +K
Sbjct: 129 LQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVATPKSNVSK 188

Query: 184 GSKKKR 188
            S KK+
Sbjct: 189 ASSKKK 194

[Close]
BLAST of Cp4.1LG03g06790 vs. NCBI nr
Match: gi|449455914|ref|XP_004145695.1| (PREDICTED: translocon-associated protein subunit beta [Cucumis sativus])

HSP 1 Score: 327.0 bits (837), Expect = 2.1e-86
Identity = 168/186 (90.32%), Postives = 180/186 (96.77%), Query Frame = 1 

Query: 4   LIHLLLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTL 63
           +IHLL AFLF+SSTIA+SDVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGSSTAYDV+L
Sbjct: 5   MIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSL 64

Query: 64  NDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKSA 123
           NDASWPGD+FDIVSGETS SWERLDAGGH+SHSFELEAK++GMFHGSPAVITFRVPTKSA
Sbjct: 65  NDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSRGMFHGSPAVITFRVPTKSA 124

Query: 124 LQEALSTPILPLDVLADRPPEKKFEW--RLLAKYGSLISVVSFVVLFVYLVASPSKSAAK 183
           LQEALSTPILPLDVLADRPPEKKFEW  RLLAKYGSLISVVS +VLF+YLVASPSKSAAK
Sbjct: 125 LQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIYLVASPSKSAAK 184

Query: 184 GSKKKR 188
           GSKKKR
Sbjct: 185 GSKKKR 190

[Close]
BLAST of Cp4.1LG03g06790 vs. NCBI nr
Match: gi|659098156|ref|XP_008450004.1| (PREDICTED: translocon-associated protein subunit beta [Cucumis melo])

HSP 1 Score: 323.6 bits (828), Expect = 2.3e-85
Identity = 166/186 (89.25%), Postives = 178/186 (95.70%), Query Frame = 1 

Query: 4   LIHLLLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTL 63
           LI LL AFLF+SSTIA+SDVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGSSTAYDV+L
Sbjct: 9   LIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSL 68

Query: 64  NDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKSA 123
           NDASWPGD+FDIVSGETS SWERLDAGGH+SHSFELEAK+KGMFHGSPAV+TFRVPTKSA
Sbjct: 69  NDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVTFRVPTKSA 128

Query: 124 LQEALSTPILPLDVLADRPPEKKFEW--RLLAKYGSLISVVSFVVLFVYLVASPSKSAAK 183
           LQEALSTPILPLDVLADRPPEKKFEW  RLL KYGSLISV+S +VLF+YLVASPSKSAAK
Sbjct: 129 LQEALSTPILPLDVLADRPPEKKFEWVKRLLTKYGSLISVISIIVLFIYLVASPSKSAAK 188

Query: 184 GSKKKR 188
           GSKKKR
Sbjct: 189 GSKKKR 194

[Close]
BLAST of Cp4.1LG03g06790 vs. NCBI nr
Match: gi|223547883|gb|EEF49375.1| (translocon-associated protein, beta subunit precursor, putative [Ricinus communis])

HSP 1 Score: 286.2 bits (731), Expect = 4.2e-74
Identity = 146/181 (80.66%), Postives = 163/181 (90.06%), Query Frame = 1 

Query: 7   LLLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTLNDA 66
           LL+A   +SST ASSDVPFIVAHKKATL RLKSG ERVSVSI+IYNQGSSTAYDV+L D 
Sbjct: 9   LLVALFLISSTSASSDVPFIVAHKKATLNRLKSGAERVSVSIDIYNQGSSTAYDVSLLDD 68

Query: 67  SWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKSALQE 126
            WP D+FD++SG TS+SWERLD GG LSH+FELE K KG+F+GSPAV+TFR+PTK+ALQE
Sbjct: 69  HWPQDIFDVISGNTSQSWERLDVGGILSHTFELEGKVKGLFYGSPAVVTFRIPTKAALQE 128

Query: 127 ALSTPILPLDVLADRPPEKKFEWRLLAKYGSLISVVSFVVLFVYLVASPSK-SAAKGSKK 186
           A STPILPLDVLA+RPPEKKFEWRLLAKYGSLISV+S VVLFVYLVASPSK SAAKGSKK
Sbjct: 129 AFSTPILPLDVLAERPPEKKFEWRLLAKYGSLISVISIVVLFVYLVASPSKSSAAKGSKK 188

[Close]
BLAST of Cp4.1LG03g06790 vs. NCBI nr
Match: gi|703097230|ref|XP_010096058.1| (Translocon-associated protein subunit beta [Morus notabilis])

HSP 1 Score: 282.7 bits (722), Expect = 4.6e-73
Identity = 150/187 (80.21%), Postives = 167/187 (89.30%), Query Frame = 1 

Query: 3   NLIHLLLAFLFVSSTI-ASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDV 62
           +LI  LLA   VS  + AS DVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGS TAYDV
Sbjct: 8   SLICGLLALFMVSLALGASDDVPFIVAHKKASLTRLKSGSERVSVSIDIYNQGSLTAYDV 67

Query: 63  TLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTK 122
           +LND SWP ++FD+VSG  SKSWERLDAGG LSHSFELEAK KG+F+G+PAVITFR+PTK
Sbjct: 68  SLNDDSWPQEIFDVVSGNISKSWERLDAGGILSHSFELEAKAKGLFNGAPAVITFRIPTK 127

Query: 123 SALQEALSTPILPLDVLADRPPEKKFEWRLLAKYGSLISVVSFVVLFVYLVASPSKS-AA 182
           +ALQEA STPI+PLDVLADRPPEKKFEWRLLAKYGSLISV++ VVLFVYLVA+PSKS AA
Sbjct: 128 AALQEAYSTPIIPLDVLADRPPEKKFEWRLLAKYGSLISVITIVVLFVYLVATPSKSGAA 187

Query: 183 KGSKKKR 188
           KGSKKKR
Sbjct: 188 KGSKKKR 194

[Close]
BLAST of Cp4.1LG03g06790 vs. NCBI nr
Match: gi|734308265|gb|KHM99232.1| (Translocon-associated protein subunit beta [Glycine soja])

HSP 1 Score: 282.7 bits (722), Expect = 4.6e-73
Identity = 145/185 (78.38%), Postives = 166/185 (89.73%), Query Frame = 1 

Query: 7   LLLAFLFVSSTI----ASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVT 66
           +L+AF  ++S +    ASSDVPFIVAHKKA+L RLKSG ERVSV+I+I+NQG+STAYDV+
Sbjct: 8   VLIAFALLASLLLCSHASSDVPFIVAHKKASLNRLKSGAERVSVTIDIFNQGTSTAYDVS 67

Query: 67  LNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKS 126
           L+D SWP D FD++SG TSKSWERLDAGG LSH+FELEAK+KG+F G PAVI FRVPTKS
Sbjct: 68  LSDDSWPSDAFDVISGSTSKSWERLDAGGILSHTFELEAKSKGVFAGEPAVIKFRVPTKS 127

Query: 127 ALQEALSTPILPLDVLADRPPEKKFEWRLLAKYGSLISVVSFVVLFVYLVASPSKSAAKG 186
           ALQEA STPILPLDVL+DRPPEKKFEWRLLAKYGSLISV+S +VLFVYLVASPSKS+AKG
Sbjct: 128 ALQEAYSTPILPLDVLSDRPPEKKFEWRLLAKYGSLISVISIMVLFVYLVASPSKSSAKG 187

Query: 187 SKKKR 188
           SKKKR
Sbjct: 188 SKKKR 192

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g06790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SSRB_HUMAN3.4e-0736.05Translocon-associated protein subunit beta OS=Homo sapiens GN=SSR2 PE=1 SV=1[more]
SSRB_MOUSE3.4e-0736.05Translocon-associated protein subunit beta OS=Mus musculus GN=Ssr2 PE=1 SV=1[more]
SSRB_BOVIN3.4e-0729.06Translocon-associated protein subunit beta OS=Bos taurus GN=SSR2 PE=2 SV=1[more]
SSRB_CANLF3.7e-0625.14Translocon-associated protein subunit beta OS=Canis lupus familiaris GN=SSR2 PE=... [more]
BLAST of Cp4.1LG03g06790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBA3_CUCSA1.5e-8690.32Translocon-associated protein subunit beta OS=Cucumis sativus GN=Csa_3G597330 PE... [more]
B9RH13_RICCO2.9e-7480.66Translocon-associated protein, beta subunit, putative OS=Ricinus communis GN=RCO... [more]
A0A0B2NVH3_GLYSO3.2e-7378.38Translocon-associated protein subunit beta OS=Glycine soja GN=glysoja_034757 PE=... [more]
A0A151T973_CAJCA3.2e-7380.00Translocon-associated protein subunit beta OS=Cajanus cajan GN=KK1_018155 PE=4 S... [more]
W9R8U7_9ROSA3.2e-7380.21Translocon-associated protein subunit beta OS=Morus notabilis GN=L484_008714 PE=... [more]
BLAST of Cp4.1LG03g06790 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G14030.18.3e-6566.13 translocon-associated protein beta (TRAPB) family protein[more]
BLAST of Cp4.1LG03g06790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449455914|ref|XP_004145695.1|2.1e-8690.32PREDICTED: translocon-associated protein subunit beta [Cucumis sativus][more]
gi|659098156|ref|XP_008450004.1|2.3e-8589.25PREDICTED: translocon-associated protein subunit beta [Cucumis melo][more]
gi|223547883|gb|EEF49375.1|4.2e-7480.66translocon-associated protein, beta subunit precursor, putative [Ricinus communi... [more]
gi|703097230|ref|XP_010096058.1|4.6e-7380.21Translocon-associated protein subunit beta [Morus notabilis][more]
gi|734308265|gb|KHM99232.1|4.6e-7378.38Translocon-associated protein subunit beta [Glycine soja][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0005783endoplasmic reticulum
Vocabulary: INTERPRO
TermDefinition
IPR008856TRAP_beta
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0034976 response to endoplasmic reticulum stress
biological_process GO:0009627 systemic acquired resistance
biological_process GO:0006613 cotranslational protein targeting to membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g06790.1Cp4.1LG03g06790.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008856Translocon-associated protein subunit betaPANTHERPTHR12861TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNITcoord: 1..187
score: 6.3
NoneNo IPR availablePANTHERPTHR12861:SF4SUBFAMILY NOT NAMEDcoord: 1..187
score: 6.3
NoneNo IPR availablePFAMPF05753TRAP_betacoord: 10..183
score: 3.1