MELO3C013627 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C013627
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionBasic helix-loop-helix DNA-binding superfamily protein
Locationchr11 : 18457169 .. 18457698 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCTCTCTACTCCAAATTGAATTCCCTTCTCCCATCCCATCACTCAAATGTTTGTTCATTATTCTTTTTCTCTCTCTTTCTCTTTTCTTTTCTTTTCTTTTCTTTTCTCCATATATTATTACATTATCTATTGGTCCTTCTTCACTAAACCTTTTGTAGGATCAGTTGCCACGGACAGTTACAGACCAGATAGAGGCAGCAATAAATTACATCAAATCATTAGAGATTAAGCTGAAACAGGATGAGGAGAAGAAGGAGAGATATTTAAGAAGATCCAAAATTGCATCGTCCTCGACGGCATCCTCTTCGTCATACTCGGCATTGTCGATAAGCCAGAATAGGAATGTACCTGAATTGAAAATTAAAGAGATGGGCTCTGCTGTGGAGGTTGTTTTAAAGACTGGGTTGGAGGATCGCTCAATGTTTTATGAGACTATTCGTATCCTTAATGAGGAACGAGCTGAGATCATCAATGTCAGTTATTCTCTTCTTGATGACACAATCCTATATTCACTCCATGCTGAG

mRNA sequence

ATGAAATCTCTCTACTCCAAATTGAATTCCCTTCTCCCATCCCATCACTCAAATGATCAGTTGCCACGGACAGTTACAGACCAGATAGAGGCAGCAATAAATTACATCAAATCATTAGAGATTAAGCTGAAACAGGATGAGGAGAAGAAGGAGAGATATTTAAGAAGATCCAAAATTGCATCGTCCTCGACGGCATCCTCTTCGTCATACTCGGCATTGTCGATAAGCCAGAATAGGAATGTACCTGAATTGAAAATTAAAGAGATGGGCTCTGCTGTGGAGGTTGTTTTAAAGACTGGGTTGGAGGATCGCTCAATGTTTTATGAGACTATTCGTATCCTTAATGAGGAACGAGCTGAGATCATCAATGTCAGTTATTCTCTTCTTGATGACACAATCCTATATTCACTCCATGCTGAG

Coding sequence (CDS)

ATGAAATCTCTCTACTCCAAATTGAATTCCCTTCTCCCATCCCATCACTCAAATGATCAGTTGCCACGGACAGTTACAGACCAGATAGAGGCAGCAATAAATTACATCAAATCATTAGAGATTAAGCTGAAACAGGATGAGGAGAAGAAGGAGAGATATTTAAGAAGATCCAAAATTGCATCGTCCTCGACGGCATCCTCTTCGTCATACTCGGCATTGTCGATAAGCCAGAATAGGAATGTACCTGAATTGAAAATTAAAGAGATGGGCTCTGCTGTGGAGGTTGTTTTAAAGACTGGGTTGGAGGATCGCTCAATGTTTTATGAGACTATTCGTATCCTTAATGAGGAACGAGCTGAGATCATCAATGTCAGTTATTCTCTTCTTGATGACACAATCCTATATTCACTCCATGCTGAG

Protein sequence

MKSLYSKLNSLLPSHHSNDQLPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYLRRSKIASSSTASSSSYSALSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYSLHAE
Homology
[Close]
BLAST of MELO3C013627 vs. Swiss-Prot
Match: BH036_ARATH (Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-07
Identity = 40/143 (27.97%), Postives = 72/143 (50.35%), Query Frame = 1 

Query: 1   MKSLYSKLNSLLPSHHSNDQLPRTVTDQIEAAINYIKSLEIKLKQDEEKKE--RYLRRSK 60
           M SLY+ L SLLP H    +  R+ +DQ+  A+NYIK L+ K+K+   +++    L R  
Sbjct: 17  MASLYASLRSLLPLHFIKGK--RSTSDQVNEAVNYIKYLQRKIKELSVRRDDLMVLSRGS 76

Query: 61  IASSSTASSSSYSALSISQNRNVPELKIKEMGSAVEVVLKTG-LEDRSMFYETIRILNEE 120
           +  SS         +   +N  V    +++    VE++L +     +  F   +++L+E 
Sbjct: 77  LLGSSNGDFKEDVEMISGKNHVV----VRQCLVGVEIMLSSRCCGGQPRFSSVLQVLSEY 136

Query: 121 RAEIINVSYSLLDDTILYSLHAE 141
              ++N   S++DD ++Y++ AE
Sbjct: 137 GLCLLNSISSIVDDRLVYTIQAE 153

[Close]
BLAST of MELO3C013627 vs. TrEMBL
Match: A0A061E482_THECC (Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_008127 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.4e-25
Identity = 66/140 (47.14%), Postives = 100/140 (71.43%), Query Frame = 1 

Query: 1   MKSLYSKLNSLLPSHHSNDQLPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYLRRSKIA 60
           MK+LYS+LNSLLP H S +  P ++ DQI+ A+NYI+SL+ +LK+  EKKE  + R +  
Sbjct: 36  MKNLYSRLNSLLPRHTSKE--PLSLPDQIDEAVNYIQSLQTRLKESREKKESLMGRKRSH 95

Query: 61  SSSTASSSSYSALSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERAE 120
             +TA+++  +A+S S     PE+ I E  SA+EVVL TG + + MFYE IRIL+EE A+
Sbjct: 96  RCTTATAAEAAAVSKS-----PEISINETDSAMEVVLMTGQDCQFMFYEMIRILHEEGAQ 155

Query: 121 IINVSYSLLDDTILYSLHAE 141
           ++N ++S+L +TI++ +HAE
Sbjct: 156 VLNANFSVLGNTIVHIVHAE 168

[Close]
BLAST of MELO3C013627 vs. TrEMBL
Match: A0A061E322_THECC (Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 3 OS=Theobroma cacao GN=TCM_008127 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.4e-25
Identity = 66/140 (47.14%), Postives = 100/140 (71.43%), Query Frame = 1 

Query: 1   MKSLYSKLNSLLPSHHSNDQLPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYLRRSKIA 60
           MK+LYS+LNSLLP H S +  P ++ DQI+ A+NYI+SL+ +LK+  EKKE  + R +  
Sbjct: 36  MKNLYSRLNSLLPRHTSKE--PLSLPDQIDEAVNYIQSLQTRLKESREKKESLMGRKRSH 95

Query: 61  SSSTASSSSYSALSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERAE 120
             +TA+++  +A+S S     PE+ I E  SA+EVVL TG + + MFYE IRIL+EE A+
Sbjct: 96  RCTTATAAEAAAVSKS-----PEISINETDSAMEVVLMTGQDCQFMFYEMIRILHEEGAQ 155

Query: 121 IINVSYSLLDDTILYSLHAE 141
           ++N ++S+L +TI++ +HAE
Sbjct: 156 VLNANFSVLGNTIVHIVHAE 168

[Close]
BLAST of MELO3C013627 vs. TrEMBL
Match: A0A061EAX8_THECC (Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_008127 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.1e-25
Identity = 67/142 (47.18%), Postives = 100/142 (70.42%), Query Frame = 1 

Query: 1   MKSLYSKLNSLLPSHHSND--QLPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYLRRSK 60
           MK+LYS+LNSLLP H S    Q P ++ DQI+ A+NYI+SL+ +LK+  EKKE  + R +
Sbjct: 36  MKNLYSRLNSLLPRHTSKWILQEPLSLPDQIDEAVNYIQSLQTRLKESREKKESLMGRKR 95

Query: 61  IASSSTASSSSYSALSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEER 120
               +TA+++  +A+S S     PE+ I E  SA+EVVL TG + + MFYE IRIL+EE 
Sbjct: 96  SHRCTTATAAEAAAVSKS-----PEISINETDSAMEVVLMTGQDCQFMFYEMIRILHEEG 155

Query: 121 AEIINVSYSLLDDTILYSLHAE 141
           A+++N ++S+L +TI++ +HAE
Sbjct: 156 AQVLNANFSVLGNTIVHIVHAE 172

[Close]
BLAST of MELO3C013627 vs. TrEMBL
Match: V4UE19_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016466mg PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-23
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = 1 

Query: 1   MKSLYSKLNSLLPSHHSNDQLPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYLRRSKIA 60
           MK+LYS L SLLP+  S ++L  ++ DQ++ AINYIK LE KLK+ ++KKE    R +  
Sbjct: 59  MKNLYSTLKSLLPNQPSKEEL--SLPDQVDEAINYIKMLETKLKECKKKKESLQGRER-- 118

Query: 61  SSSTASSSSYSALSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERAE 120
           S +  S  + + L  S +   PE++I EMGS +EV+L +G++D+ +FY+ IRIL+++ AE
Sbjct: 119 SHACISDGTEARLMTSSSPKAPEIEIHEMGSNLEVILTSGVDDQFIFYDVIRILHQDGAE 178

Query: 121 IINVSYSLLDDTILYSLHAE 141
           I+N ++S++ +TI + +HAE
Sbjct: 179 ILNANFSVVGNTIFHVIHAE 194

[Close]
BLAST of MELO3C013627 vs. TrEMBL
Match: V4U3N5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016466mg PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-23
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = 1 

Query: 1   MKSLYSKLNSLLPSHHSNDQLPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYLRRSKIA 60
           MK+LYS L SLLP+  S ++L  ++ DQ++ AINYIK LE KLK+ ++KKE    R +  
Sbjct: 59  MKNLYSTLKSLLPNQPSKEEL--SLPDQVDEAINYIKMLETKLKECKKKKESLQGRER-- 118

Query: 61  SSSTASSSSYSALSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERAE 120
           S +  S  + + L  S +   PE++I EMGS +EV+L +G++D+ +FY+ IRIL+++ AE
Sbjct: 119 SHACISDGTEARLMTSSSPKAPEIEIHEMGSNLEVILTSGVDDQFIFYDVIRILHQDGAE 178

Query: 121 IINVSYSLLDDTILYSLHAE 141
           I+N ++S++ +TI + +HAE
Sbjct: 179 ILNANFSVVGNTIFHVIHAE 194

[Close]
BLAST of MELO3C013627 vs. TAIR10
Match: AT4G20970.1 (AT4G20970.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-23
Identity = 58/142 (40.85%), Postives = 90/142 (63.38%), Query Frame = 1 

Query: 1   MKSLYSKLNSLLPSHHSNDQLPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYLRRSKIA 60
           MKSLYS+L SLLP H S +  P T+ DQ++ A NYIK L++ +++  E+K   +  + + 
Sbjct: 27  MKSLYSELISLLPHHSSTE--PLTLPDQLDEAANYIKKLQVNVEKKRERKRNLVATTTLE 86

Query: 61  S-SSTASSSSYSALSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEE-R 120
             +S  SSS  S++ +S  R +P+++I+E GS   + L T LE + MF E IR+L EE  
Sbjct: 87  KLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVTSLEHKFMFCEIIRVLTEELG 146

Query: 121 AEIINVSYSLLDDTILYSLHAE 141
           AEI +  YS++DD + ++LH +
Sbjct: 147 AEITHAGYSIVDDAVFHTLHCK 166

[Close]
BLAST of MELO3C013627 vs. TAIR10
Match: AT5G51780.1 (AT5G51780.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-08
Identity = 40/143 (27.97%), Postives = 72/143 (50.35%), Query Frame = 1 

Query: 1   MKSLYSKLNSLLPSHHSNDQLPRTVTDQIEAAINYIKSLEIKLKQDEEKKE--RYLRRSK 60
           M SLY+ L SLLP H    +  R+ +DQ+  A+NYIK L+ K+K+   +++    L R  
Sbjct: 17  MASLYASLRSLLPLHFIKGK--RSTSDQVNEAVNYIKYLQRKIKELSVRRDDLMVLSRGS 76

Query: 61  IASSSTASSSSYSALSISQNRNVPELKIKEMGSAVEVVLKTG-LEDRSMFYETIRILNEE 120
           +  SS         +   +N  V    +++    VE++L +     +  F   +++L+E 
Sbjct: 77  LLGSSNGDFKEDVEMISGKNHVV----VRQCLVGVEIMLSSRCCGGQPRFSSVLQVLSEY 136

Query: 121 RAEIINVSYSLLDDTILYSLHAE 141
              ++N   S++DD ++Y++ AE
Sbjct: 137 GLCLLNSISSIVDDRLVYTIQAE 153

[Close]
BLAST of MELO3C013627 vs. NCBI nr
Match: gi|590690815|ref|XP_007043611.1| (Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 123.2 bits (308), Expect = 3.5e-25
Identity = 66/140 (47.14%), Postives = 100/140 (71.43%), Query Frame = 1 

Query: 1   MKSLYSKLNSLLPSHHSNDQLPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYLRRSKIA 60
           MK+LYS+LNSLLP H S +  P ++ DQI+ A+NYI+SL+ +LK+  EKKE  + R +  
Sbjct: 36  MKNLYSRLNSLLPRHTSKE--PLSLPDQIDEAVNYIQSLQTRLKESREKKESLMGRKRSH 95

Query: 61  SSSTASSSSYSALSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERAE 120
             +TA+++  +A+S S     PE+ I E  SA+EVVL TG + + MFYE IRIL+EE A+
Sbjct: 96  RCTTATAAEAAAVSKS-----PEISINETDSAMEVVLMTGQDCQFMFYEMIRILHEEGAQ 155

Query: 121 IINVSYSLLDDTILYSLHAE 141
           ++N ++S+L +TI++ +HAE
Sbjct: 156 VLNANFSVLGNTIVHIVHAE 168

[Close]
BLAST of MELO3C013627 vs. NCBI nr
Match: gi|590690822|ref|XP_007043613.1| (Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 3 [Theobroma cacao])

HSP 1 Score: 123.2 bits (308), Expect = 3.5e-25
Identity = 66/140 (47.14%), Postives = 100/140 (71.43%), Query Frame = 1 

Query: 1   MKSLYSKLNSLLPSHHSNDQLPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYLRRSKIA 60
           MK+LYS+LNSLLP H S +  P ++ DQI+ A+NYI+SL+ +LK+  EKKE  + R +  
Sbjct: 36  MKNLYSRLNSLLPRHTSKE--PLSLPDQIDEAVNYIQSLQTRLKESREKKESLMGRKRSH 95

Query: 61  SSSTASSSSYSALSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERAE 120
             +TA+++  +A+S S     PE+ I E  SA+EVVL TG + + MFYE IRIL+EE A+
Sbjct: 96  RCTTATAAEAAAVSKS-----PEISINETDSAMEVVLMTGQDCQFMFYEMIRILHEEGAQ 155

Query: 121 IINVSYSLLDDTILYSLHAE 141
           ++N ++S+L +TI++ +HAE
Sbjct: 156 VLNANFSVLGNTIVHIVHAE 168

[Close]
BLAST of MELO3C013627 vs. NCBI nr
Match: gi|590690818|ref|XP_007043612.1| (Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-24
Identity = 67/142 (47.18%), Postives = 100/142 (70.42%), Query Frame = 1 

Query: 1   MKSLYSKLNSLLPSHHSND--QLPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYLRRSK 60
           MK+LYS+LNSLLP H S    Q P ++ DQI+ A+NYI+SL+ +LK+  EKKE  + R +
Sbjct: 36  MKNLYSRLNSLLPRHTSKWILQEPLSLPDQIDEAVNYIQSLQTRLKESREKKESLMGRKR 95

Query: 61  IASSSTASSSSYSALSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEER 120
               +TA+++  +A+S S     PE+ I E  SA+EVVL TG + + MFYE IRIL+EE 
Sbjct: 96  SHRCTTATAAEAAAVSKS-----PEISINETDSAMEVVLMTGQDCQFMFYEMIRILHEEG 155

Query: 121 AEIINVSYSLLDDTILYSLHAE 141
           A+++N ++S+L +TI++ +HAE
Sbjct: 156 AQVLNANFSVLGNTIVHIVHAE 172

[Close]
BLAST of MELO3C013627 vs. NCBI nr
Match: gi|567909957|ref|XP_006447292.1| (hypothetical protein CICLE_v10016466mg [Citrus clementina])

HSP 1 Score: 115.9 bits (289), Expect = 5.6e-23
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = 1 

Query: 1   MKSLYSKLNSLLPSHHSNDQLPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYLRRSKIA 60
           MK+LYS L SLLP+  S ++L  ++ DQ++ AINYIK LE KLK+ ++KKE    R +  
Sbjct: 59  MKNLYSTLKSLLPNQPSKEEL--SLPDQVDEAINYIKMLETKLKECKKKKESLQGRER-- 118

Query: 61  SSSTASSSSYSALSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERAE 120
           S +  S  + + L  S +   PE++I EMGS +EV+L +G++D+ +FY+ IRIL+++ AE
Sbjct: 119 SHACISDGTEARLMTSSSPKAPEIEIHEMGSNLEVILTSGVDDQFIFYDVIRILHQDGAE 178

Query: 121 IINVSYSLLDDTILYSLHAE 141
           I+N ++S++ +TI + +HAE
Sbjct: 179 ILNANFSVVGNTIFHVIHAE 194

[Close]
BLAST of MELO3C013627 vs. NCBI nr
Match: gi|567909955|ref|XP_006447291.1| (hypothetical protein CICLE_v10016466mg [Citrus clementina])

HSP 1 Score: 115.9 bits (289), Expect = 5.6e-23
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = 1 

Query: 1   MKSLYSKLNSLLPSHHSNDQLPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYLRRSKIA 60
           MK+LYS L SLLP+  S ++L  ++ DQ++ AINYIK LE KLK+ ++KKE    R +  
Sbjct: 59  MKNLYSTLKSLLPNQPSKEEL--SLPDQVDEAINYIKMLETKLKECKKKKESLQGRER-- 118

Query: 61  SSSTASSSSYSALSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERAE 120
           S +  S  + + L  S +   PE++I EMGS +EV+L +G++D+ +FY+ IRIL+++ AE
Sbjct: 119 SHACISDGTEARLMTSSSPKAPEIEIHEMGSNLEVILTSGVDDQFIFYDVIRILHQDGAE 178

Query: 121 IINVSYSLLDDTILYSLHAE 141
           I+N ++S++ +TI + +HAE
Sbjct: 179 ILNANFSVVGNTIFHVIHAE 194

The following BLAST results are available for this feature:
BLAST of MELO3C013627 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BH036_ARATH1.9e-0727.97Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2 SV=1[more]
BLAST of MELO3C013627 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061E482_THECC2.4e-2547.14Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 OS=Th... [more]
A0A061E322_THECC2.4e-2547.14Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 3 OS=Th... [more]
A0A061EAX8_THECC7.1e-2547.18Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2 OS=Th... [more]
V4UE19_9ROSI3.9e-2343.57Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016466mg PE=4 SV=1[more]
V4U3N5_9ROSI3.9e-2343.57Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016466mg PE=4 SV=1[more]
BLAST of MELO3C013627 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G20970.11.6e-2340.85 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT5G51780.11.1e-0827.97 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of MELO3C013627 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|590690815|ref|XP_007043611.1|3.5e-2547.14Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 [Theo... [more]
gi|590690822|ref|XP_007043613.1|3.5e-2547.14Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 3 [Theo... [more]
gi|590690818|ref|XP_007043612.1|1.0e-2447.18Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2 [Theo... [more]
gi|567909957|ref|XP_006447292.1|5.6e-2343.57hypothetical protein CICLE_v10016466mg [Citrus clementina][more]
gi|567909955|ref|XP_006447291.1|5.6e-2343.57hypothetical protein CICLE_v10016466mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR015660MASH1/Ascl1a-like
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005575 cellular_component
cellular_component GO:0090575 RNA polymerase II transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013627T1MELO3C013627T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 1..58
score: 2.7
IPR015660Achaete-scute transcription factor-relatedPANTHERPTHR13935ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATEDcoord: 1..140
score: 1.1
NoneNo IPR availableunknownCoilCoilcoord: 29..56
scor
NoneNo IPR availablePANTHERPTHR13935:SF53BASIC HELIX-LOOP-HELIX DOMAIN-CONTAINING PROTEINcoord: 1..140
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C013627Csa7G048070Cucumber (Chinese Long) v2cumeB514
MELO3C013627Cla013555Watermelon (97103) v1mewmB109
MELO3C013627ClCG02G017710Watermelon (Charleston Gray)mewcgB095
MELO3C013627Cla97C02G043460Watermelon (97103) v2mewmbB097
MELO3C013627Bhi05G001627Wax gourdmewgoB110
MELO3C013627Bhi10G000853Wax gourdmewgoB132
MELO3C013627CSPI07G04710Wild cucumber (PI 183967)cpimeB519
MELO3C013627Cucsa.119170Cucumber (Gy14) v1cgymeB177
MELO3C013627Cucsa.147580Cucumber (Gy14) v1cgymeB247
MELO3C013627CmaCh20G002040Cucurbita maxima (Rimu)cmameB496
MELO3C013627CmaCh02G000960Cucurbita maxima (Rimu)cmameB555
MELO3C013627CmoCh02G000960Cucurbita moschata (Rifu)cmomeB543
MELO3C013627Lsi10G009020Bottle gourd (USVL1VR-Ls)lsimeB048
MELO3C013627Lsi11G015660Bottle gourd (USVL1VR-Ls)lsimeB087
MELO3C013627Cp4.1LG05g14860Cucurbita pepo (Zucchini)cpemeB661
MELO3C013627CsGy6G010460Cucumber (Gy14) v2cgybmeB384
MELO3C013627Carg19128Silver-seed gourdcarmeB0714
MELO3C013627CsaV3_7G004510Cucumber (Chinese Long) v3cucmeB531
MELO3C013627CsaV3_6G012850Cucumber (Chinese Long) v3cucmeB449
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
MELO3C013627MELO3C018728Melon (DHL92) v3.5.1memeB043
The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C013627Cucurbita moschata (Rifu)cmomeB487
MELO3C013627Wild cucumber (PI 183967)cpimeB438
MELO3C013627Cucumber (Chinese Long) v2cumeB446
MELO3C013627Cucurbita pepo (Zucchini)cpemeB263
MELO3C013627Silver-seed gourdcarmeB0027
MELO3C013627Silver-seed gourdcarmeB0417